Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:17907497-19112065

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lfibq22 8 17328897 to 18316447 987550 QTL liver fibrosis QTL 22
Gm7724 8 18052917 to 18053666 749 - pseudogene predicted gene 7724
D8Mit22 8 18093267 to 18093416 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 22
Gm25665 8 18274712 to 18274821 109 - snoRNA gene predicted gene, 25665
Tssr80525 8 18296488 to 18296489 1 - TSS region transcription start site region 80525
1700014L14Rik 8 18319523 to 18334338 14815 - lincRNA gene RIKEN cDNA 1700014L14 gene
Tssr80526 8 18334318 to 18334321 3 - TSS region transcription start site region 80526
D8Mit21 8 18369135 to 18369344 209 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 21
D8Mit355 8 18446500 to 18446747 247 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 355
Gm40463 8 18497497 to 18522065 24568 - lncRNA gene predicted gene, 40463
Tssr76518 8 18500723 to 18500726 3 + TSS region transcription start site region 76518
Gm24469 8 18512515 to 18512645 130 - snoRNA gene predicted gene, 24469
Gm35740 8 18541975 to 18545256 3281 - lncRNA gene predicted gene, 35740
D8Dcr3 8 18580047 to 18580146 99 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 3
Cpgi20135 8 18594845 to 18595915 1070 CpG island CpG island 20135
Tssr76519 8 18595128 to 18595141 13 + TSS region transcription start site region 76519
Mcph1 8 18595131 to 18803189 208058 + protein coding gene microcephaly, primary autosomal recessive 1
Tssr76520 8 18595144 to 18595186 42 + TSS region transcription start site region 76520
Tssr76521 8 18595526 to 18595583 57 + TSS region transcription start site region 76521
Tssr76522 8 18606895 to 18606902 7 + TSS region transcription start site region 76522
Gm25763 8 18613981 to 18614109 128 - snoRNA gene predicted gene, 25763
Gm16725 8 18652801 to 18678056 25255 - antisense lncRNA gene predicted gene, 16725
Gm17149 8 18656615 to 18656989 374 - pseudogene predicted gene 17149
Angpt2 8 18690263 to 18741562 51299 - protein coding gene angiopoietin 2
D8Ertd51e 8 18725478 to 18725680 202 DNA segment DNA segment, Chr 8, ERATO Doi 51, expressed
Tssr80527 8 18741342 to 18741359 17 - TSS region transcription start site region 80527
Tssr80528 8 18741365 to 18741378 13 - TSS region transcription start site region 80528
Tssr80529 8 18741487 to 18741500 13 - TSS region transcription start site region 80529
Tssr80530 8 18741503 to 18741525 22 - TSS region transcription start site region 80530
Tssr80531 8 18741542 to 18741566 24 - TSS region transcription start site region 80531
Tssr80532 8 18741570 to 18741587 17 - TSS region transcription start site region 80532
Tssr80533 8 18768194 to 18768209 15 - TSS region transcription start site region 80533
D8Mit62 8 18771225 to 18771344 119 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 62
9630029G12Rik 8 18844180 to 18846775 2595 unclassified non-coding RNA gene RIKEN cDNA 9630029G12 gene
Cpgi20136 8 18845790 to 18847159 1369 CpG island CpG island 20136
Tssr80534 8 18846147 to 18846190 43 - TSS region transcription start site region 80534
Tssr76523 8 18846251 to 18846328 77 + TSS region transcription start site region 76523
Agpat5 8 18846279 to 18884413 38134 + protein coding gene 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)
Tssr76524 8 18846468 to 18846489 21 + TSS region transcription start site region 76524
Tssr76525 8 18846491 to 18846512 21 + TSS region transcription start site region 76525
Tssr76526 8 18846524 to 18846544 20 + TSS region transcription start site region 76526
Tssr76527 8 18846580 to 18846593 13 + TSS region transcription start site region 76527
Gm45493 8 18862196 to 18866143 3947 + unclassified gene predicted gene 45493
Tssr76528 8 18882226 to 18882245 19 + TSS region transcription start site region 76528
Gm35934 8 18890192 to 18902291 12099 - antisense lncRNA gene predicted gene, 35934
Tssr76529 8 18899612 to 18899617 5 + TSS region transcription start site region 76529
Tssr80535 8 18902268 to 18902277 9 - TSS region transcription start site region 80535
Gm45770 8 18905439 to 18906533 1094 - pseudogene predicted gene 45770
Xkr5 8 18932729 to 18950975 18246 - protein coding gene X-linked Kx blood group related 5
Gm22551 8 18932989 to 18933091 102 + snoRNA gene predicted gene, 22551
Gm40464 8 18950289 to 18970684 20395 + lncRNA gene predicted gene, 40464
Cpgi20137 8 18950324 to 18951026 702 CpG island CpG island 20137
Tssr80536 8 18950932 to 18950965 33 - TSS region transcription start site region 80536
Defb40 8 18974940 to 18978116 3176 - protein coding gene defensin beta 40
Tssr80537 8 18978191 to 18978201 10 - TSS region transcription start site region 80537
Tssr80538 8 18978211 to 18978227 16 - TSS region transcription start site region 80538
Defb37 8 18986233 to 18991055 4822 - protein coding gene defensin beta 37
Gm39138 8 18989004 to 18998649 9645 + lncRNA gene predicted gene, 39138
Tssr80539 8 18990992 to 18991001 9 - TSS region transcription start site region 80539
Tssr80540 8 18991028 to 18991041 13 - TSS region transcription start site region 80540
Tssr80541 8 18991046 to 18991061 15 - TSS region transcription start site region 80541
Defb38 8 19023464 to 19026529 3065 - protein coding gene defensin beta 38
Tssr80542 8 19026543 to 19026557 14 - TSS region transcription start site region 80542
Tssr80543 8 19026558 to 19026573 15 - TSS region transcription start site region 80543
Tssr80544 8 19026582 to 19026587 5 - TSS region transcription start site region 80544
Gm15366 8 19037428 to 19038446 1018 - pseudogene predicted gene 15366
Defb39 8 19052826 to 19064810 11984 - protein coding gene defensin beta 39
Tssr76530 8 19062951 to 19062955 4 + TSS region transcription start site region 76530
Tssr80545 8 19064865 to 19064880 15 - TSS region transcription start site region 80545
Tssr80546 8 19064885 to 19064907 22 - TSS region transcription start site region 80546
Tssr80547 8 19064912 to 19064932 20 - TSS region transcription start site region 80547
Tssr80548 8 19064947 to 19064950 3 - TSS region transcription start site region 80548
Defb12 8 19111931 to 19114833 2902 - protein coding gene defensin beta 12