Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:17411871-21951877

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309 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Csmd1 8 15892538 to 17535385 1642847 - protein coding gene CUB and Sushi multiple domains 1
Lfibq22 8 17328897 to 18316447 987550 QTL liver fibrosis QTL 22
Tssr80514 8 17419715 to 17419720 5 - TSS region transcription start site region 80514
C030002A05Rik 8 17438810 to 17439237 427 unclassified gene RIKEN cDNA C030002A05 gene
Tssr80515 8 17438965 to 17438969 4 - TSS region transcription start site region 80515
D8Mit355.1 8 17451569 to 17451678 109 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 355.1
Tssr80516 8 17459525 to 17459540 15 - TSS region transcription start site region 80516
Tssr80517 8 17466838 to 17466842 4 - TSS region transcription start site region 80517
D8Mit221 8 17517698 to 17517805 107 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 221
Cpgi20133 8 17532429 to 17532924 495 CpG island CpG island 20133
Cpgi20134 8 17534403 to 17535834 1431 CpG island CpG island 20134
Tssr80518 8 17535190 to 17535197 7 - TSS region transcription start site region 80518
Tssr80519 8 17535205 to 17535219 14 - TSS region transcription start site region 80519
Tssr80520 8 17535229 to 17535240 11 - TSS region transcription start site region 80520
Tssr80521 8 17535251 to 17535390 139 - TSS region transcription start site region 80521
Tssr80522 8 17535608 to 17535632 24 - TSS region transcription start site region 80522
Tssr80523 8 17535634 to 17535645 11 - TSS region transcription start site region 80523
Tssr80524 8 17535661 to 17535677 16 - TSS region transcription start site region 80524
Gm39137 8 17562287 to 17574415 12128 + lncRNA gene predicted gene, 39137
D8Mit203 8 17586150 to 17586294 144 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 203
Tssr76517 8 17590516 to 17590544 28 + TSS region transcription start site region 76517
D8Mit172 8 17804003 to 17804256 253 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 172
Gm7724 8 18052917 to 18053666 749 - pseudogene predicted gene 7724
D8Mit22 8 18093267 to 18093416 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 22
Gm25665 8 18274712 to 18274821 109 - snoRNA gene predicted gene, 25665
Tssr80525 8 18296488 to 18296489 1 - TSS region transcription start site region 80525
1700014L14Rik 8 18319523 to 18334338 14815 - lincRNA gene RIKEN cDNA 1700014L14 gene
Tssr80526 8 18334318 to 18334321 3 - TSS region transcription start site region 80526
D8Mit21 8 18369135 to 18369344 209 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 21
D8Mit355 8 18446500 to 18446747 247 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 355
Gm40463 8 18497497 to 18522065 24568 - lncRNA gene predicted gene, 40463
Tssr76518 8 18500723 to 18500726 3 + TSS region transcription start site region 76518
Gm24469 8 18512515 to 18512645 130 - snoRNA gene predicted gene, 24469
Gm35740 8 18541975 to 18545256 3281 - lncRNA gene predicted gene, 35740
D8Dcr3 8 18580047 to 18580146 99 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 3
Cpgi20135 8 18594845 to 18595915 1070 CpG island CpG island 20135
Tssr76519 8 18595128 to 18595141 13 + TSS region transcription start site region 76519
Mcph1 8 18595131 to 18803189 208058 + protein coding gene microcephaly, primary autosomal recessive 1
Tssr76520 8 18595144 to 18595186 42 + TSS region transcription start site region 76520
Tssr76521 8 18595526 to 18595583 57 + TSS region transcription start site region 76521
Tssr76522 8 18606895 to 18606902 7 + TSS region transcription start site region 76522
Gm25763 8 18613981 to 18614109 128 - snoRNA gene predicted gene, 25763
Gm16725 8 18652801 to 18678056 25255 - antisense lncRNA gene predicted gene, 16725
Gm17149 8 18656615 to 18656989 374 - pseudogene predicted gene 17149
Angpt2 8 18690263 to 18741562 51299 - protein coding gene angiopoietin 2
D8Ertd51e 8 18725478 to 18725680 202 DNA segment DNA segment, Chr 8, ERATO Doi 51, expressed
Tssr80527 8 18741342 to 18741359 17 - TSS region transcription start site region 80527
Tssr80528 8 18741365 to 18741378 13 - TSS region transcription start site region 80528
Tssr80529 8 18741487 to 18741500 13 - TSS region transcription start site region 80529
Tssr80530 8 18741503 to 18741525 22 - TSS region transcription start site region 80530
Tssr80531 8 18741542 to 18741566 24 - TSS region transcription start site region 80531
Tssr80532 8 18741570 to 18741587 17 - TSS region transcription start site region 80532
Tssr80533 8 18768194 to 18768209 15 - TSS region transcription start site region 80533
D8Mit62 8 18771225 to 18771344 119 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 62
9630029G12Rik 8 18844180 to 18846775 2595 unclassified non-coding RNA gene RIKEN cDNA 9630029G12 gene
Cpgi20136 8 18845790 to 18847159 1369 CpG island CpG island 20136
Tssr80534 8 18846147 to 18846190 43 - TSS region transcription start site region 80534
Tssr76523 8 18846251 to 18846328 77 + TSS region transcription start site region 76523
Agpat5 8 18846279 to 18884413 38134 + protein coding gene 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)
Tssr76524 8 18846468 to 18846489 21 + TSS region transcription start site region 76524
Tssr76525 8 18846491 to 18846512 21 + TSS region transcription start site region 76525
Tssr76526 8 18846524 to 18846544 20 + TSS region transcription start site region 76526
Tssr76527 8 18846580 to 18846593 13 + TSS region transcription start site region 76527
Gm45493 8 18862196 to 18866143 3947 + unclassified gene predicted gene 45493
Tssr76528 8 18882226 to 18882245 19 + TSS region transcription start site region 76528
Gm35934 8 18890192 to 18902291 12099 - antisense lncRNA gene predicted gene, 35934
Tssr76529 8 18899612 to 18899617 5 + TSS region transcription start site region 76529
Tssr80535 8 18902268 to 18902277 9 - TSS region transcription start site region 80535
Gm45770 8 18905439 to 18906533 1094 - pseudogene predicted gene 45770
Xkr5 8 18932729 to 18950975 18246 - protein coding gene X-linked Kx blood group related 5
Gm22551 8 18932989 to 18933091 102 + snoRNA gene predicted gene, 22551
Gm40464 8 18950289 to 18970684 20395 + lncRNA gene predicted gene, 40464
Cpgi20137 8 18950324 to 18951026 702 CpG island CpG island 20137
Tssr80536 8 18950932 to 18950965 33 - TSS region transcription start site region 80536
Defb40 8 18974940 to 18978116 3176 - protein coding gene defensin beta 40
Tssr80537 8 18978191 to 18978201 10 - TSS region transcription start site region 80537
Tssr80538 8 18978211 to 18978227 16 - TSS region transcription start site region 80538
Defb37 8 18986233 to 18991055 4822 - protein coding gene defensin beta 37
Gm39138 8 18989004 to 18998649 9645 + lncRNA gene predicted gene, 39138
Tssr80539 8 18990992 to 18991001 9 - TSS region transcription start site region 80539
Tssr80540 8 18991028 to 18991041 13 - TSS region transcription start site region 80540
Tssr80541 8 18991046 to 18991061 15 - TSS region transcription start site region 80541
Defb38 8 19023464 to 19026529 3065 - protein coding gene defensin beta 38
Tssr80542 8 19026543 to 19026557 14 - TSS region transcription start site region 80542
Tssr80543 8 19026558 to 19026573 15 - TSS region transcription start site region 80543
Tssr80544 8 19026582 to 19026587 5 - TSS region transcription start site region 80544
Gm15366 8 19037428 to 19038446 1018 - pseudogene predicted gene 15366
Defb39 8 19052826 to 19064810 11984 - protein coding gene defensin beta 39
Tssr76530 8 19062951 to 19062955 4 + TSS region transcription start site region 76530
Tssr80545 8 19064865 to 19064880 15 - TSS region transcription start site region 80545
Tssr80546 8 19064885 to 19064907 22 - TSS region transcription start site region 80546
Tssr80547 8 19064912 to 19064932 20 - TSS region transcription start site region 80547
Tssr80548 8 19064947 to 19064950 3 - TSS region transcription start site region 80548
Defb12 8 19111931 to 19114833 2902 - protein coding gene defensin beta 12
Tssr2505 8 19113197 to 19113208 11 + TSS region transcription start site region 2505
Tssr80549 8 19114830 to 19114838 8 - TSS region transcription start site region 80549
Tssr2506 8 19123714 to 19123715 1 + TSS region transcription start site region 2506
Defb34 8 19123752 to 19126540 2788 + protein coding gene defensin beta 34
Tssr76531 8 19140751 to 19140767 16 + TSS region transcription start site region 76531
Spag11b 8 19140759 to 19143010 2251 + protein coding gene sperm associated antigen 11B
Gm45826 8 19140778 to 19159440 18662 + protein coding gene predicted gene 45826
Tssr76532 8 19141371 to 19141383 12 + TSS region transcription start site region 76532
Tssr76533 8 19141429 to 19141440 11 + TSS region transcription start site region 76533
Tssr76534 8 19141447 to 19141469 22 + TSS region transcription start site region 76534
Tssr80550 8 19141471 to 19141518 47 - TSS region transcription start site region 80550
Tssr76535 8 19141482 to 19141496 14 + TSS region transcription start site region 76535
Tssr76536 8 19142604 to 19142612 8 + TSS region transcription start site region 76536
Tssr80551 8 19142658 to 19142661 3 - TSS region transcription start site region 80551
Tssr80552 8 19142833 to 19142840 7 - TSS region transcription start site region 80552
Tssr76537 8 19150756 to 19150760 4 + TSS region transcription start site region 76537
Tssr2507 8 19157846 to 19157853 7 + TSS region transcription start site region 2507
Tssr76538 8 19157879 to 19157893 14 + TSS region transcription start site region 76538
Spag11a 8 19157886 to 19159578 1692 + protein coding gene sperm associated antigen 11A
Tssr80553 8 19158634 to 19158666 32 - TSS region transcription start site region 80553
Gm46034 8 19160244 to 19162222 1978 + lncRNA gene predicted gene, 46034
Tssr76539 8 19163911 to 19163919 8 + TSS region transcription start site region 76539
D8Mit335 8 19165366 to 19165488 122 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 335
Gm39139 8 19185888 to 19188065 2177 - lincRNA gene predicted gene, 39139
D8Mit159 8 19186980 to 19187169 189 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 159
Tssr76540 8 19194319 to 19194333 14 + TSS region transcription start site region 76540
Defb14 8 19194357 to 19195212 855 + protein coding gene defensin beta 14
Tssr80554 8 19197144 to 19197150 6 - TSS region transcription start site region 80554
Tssr76541 8 19198702 to 19198706 4 + TSS region transcription start site region 76541
Defb4 8 19198706 to 19201545 2839 + protein coding gene defensin beta 4
Defa-ps12 8 19210462 to 19212760 2298 + pseudogene defensin, alpha, pseudogene 12
Tssr76542 8 19225474 to 19225482 8 + TSS region transcription start site region 76542
Defb6 8 19225478 to 19228209 2731 + protein coding gene defensin beta 6
Defb46 8 19239916 to 19242143 2227 + protein coding gene defensin beta 46
Defb5 8 19247592 to 19250828 3236 + protein coding gene defensin beta 5
Gm15357 8 19279009 to 19279846 837 - pseudogene predicted gene 15357
Defb3 8 19293360 to 19295291 1931 + protein coding gene defensin beta 3
Defa-ps13 8 19300677 to 19304794 4117 + pseudogene defensin, alpha, pseudogene 13
Defa-ps14 8 19422506 to 19423444 938 + pseudogene defensin, alpha, pseudogene 14
Defb8 8 19445769 to 19447606 1837 - protein coding gene defensin beta 8
Defa-ps15 8 19472893 to 19474732 1839 - pseudogene defensin, alpha, pseudogene 15
Rpl19-ps11 8 19492936 to 19493526 590 + pseudogene ribosomal protein L19, pseudogene 11
Gm27288 8 19493189 to 19493268 79 + miRNA gene predicted gene, 27288
Defb7 8 19495097 to 19497775 2678 + protein coding gene defensin beta 7
Gm15358 8 19513878 to 19514397 519 - pseudogene predicted gene 15358
Tssr76543 8 19517032 to 19517041 9 + TSS region transcription start site region 76543
Cpgi20138 8 19535152 to 19536302 1150 CpG island CpG island 20138
Gm27852 8 19535319 to 19535408 89 - miRNA gene predicted gene, 27852
Tssr76544 8 19535426 to 19535463 37 + TSS region transcription start site region 76544
Gm16425 8 19535454 to 19538583 3129 + pseudogene predicted gene 16425
Tssr76545 8 19535826 to 19535843 17 + TSS region transcription start site region 76545
Selenot-ps 8 19579940 to 19580532 592 + pseudogene selenoprotein T, pseudogene
Gm35998 8 19580900 to 19638879 57979 - lincRNA gene predicted gene, 35998
Tssr80555 8 19600934 to 19600935 1 - TSS region transcription start site region 80555
Gm29789 8 19632898 to 19635441 2543 + pseudogene predicted gene, 29789
Tssr76546 8 19681871 to 19681877 6 + TSS region transcription start site region 76546
Gm6483 8 19682449 to 19697736 15287 + pseudogene predicted gene 6483
Tssr76547 8 19682630 to 19682665 35 + TSS region transcription start site region 76547
Tssr76548 8 19689079 to 19689099 20 + TSS region transcription start site region 76548
Tssr164693 8 19695005 to 19695019 14 + TSS region transcription start site region 164693
Tssr164694 8 19695048 to 19695071 23 + TSS region transcription start site region 164694
Tssr164695 8 19695226 to 19695240 14 + TSS region transcription start site region 164695
Tssr164696 8 19695266 to 19695300 34 + TSS region transcription start site region 164696
Tssr164697 8 19696093 to 19696104 11 + TSS region transcription start site region 164697
Tssr164698 8 19696129 to 19696143 14 + TSS region transcription start site region 164698
Tssr164699 8 19696196 to 19696207 11 + TSS region transcription start site region 164699
Gm7760 8 19711128 to 19711705 577 - pseudogene predicted gene 7760
4930467E23Rik 8 19729576 to 19753527 23951 + protein coding gene RIKEN cDNA 4930467E23 gene
Cpgi20139 8 19784621 to 19785213 592 CpG island CpG island 20139
Tssr76549 8 19784623 to 19784658 35 + TSS region transcription start site region 76549
Tssr164700 8 19784715 to 19784746 31 + TSS region transcription start site region 164700
Gm10060 8 19784746 to 19784850 104 + pseudogene predicted gene 10060
Gm26853 8 19789798 to 19798548 8750 + lincRNA gene predicted gene, 26853
Gm31371 8 19903392 to 19925713 22321 + protein coding gene predicted gene, 31371
Gm20786 8 19942830 to 19943265 435 - pseudogene predicted gene, 20786
Gm46075 8 19973994 to 19979937 5943 - lncRNA gene predicted gene, 46075
Tssr2508 8 19979996 to 19980042 46 + TSS region transcription start site region 2508
Tssr2509 8 19980050 to 19980062 12 + TSS region transcription start site region 2509
Gm40466 8 20001099 to 20008736 7637 + lncRNA gene predicted gene, 40466
Gm36166 8 20013842 to 20016268 2426 + lncRNA gene predicted gene, 36166
Gm45754 8 20019133 to 20019411 278 - pseudogene predicted gene 45754
Gm20778 8 20035108 to 20040320 5212 + pseudogene predicted gene, 20778
Gm21769 8 20122384 to 20122494 110 + pseudogene predicted gene, 21769
Gm21811 8 20136502 to 20151665 15163 + pseudogene predicted gene, 21811
Gm40468 8 20257557 to 20261199 3642 - lncRNA gene predicted gene, 40468
6820431F20Rik 8 20268286 to 20297432 29146 - pseudogene RIKEN cDNA 6820431F20 gene
Gm26804 8 20292477 to 20420781 128304 + lincRNA gene predicted gene, 26804
Cpgi20140 8 20296948 to 20297555 607 CpG island CpG island 20140
Gm20583 8 20297324 to 20297428 104 - pseudogene predicted gene, 20583
Tssr80556 8 20297518 to 20297549 31 - TSS region transcription start site region 80556
Gm15319 8 20337664 to 20363210 25546 - protein coding gene predicted gene 15319
Gm7807 8 20381081 to 20381658 577 + pseudogene predicted gene 7807
2610005L07Rik 8 20385782 to 20424814 39032 - pseudogene RIKEN cDNA 2610005L07 gene
Cpgi20141 8 20424245 to 20424870 625 CpG island CpG island 20141
Gm20584 8 20424592 to 20424696 104 - pseudogene predicted gene, 20584
Tssr164701 8 20424796 to 20424814 18 - TSS region transcription start site region 164701
Gm40467 8 20498274 to 20512049 13775 + lncRNA gene predicted gene, 40467
Tssr2510 8 20550210 to 20550227 17 + TSS region transcription start site region 2510
Gm21182 8 20556693 to 20557486 793 - pseudogene predicted gene, 21182
Gm21092 8 20567597 to 20582771 15174 + pseudogene predicted gene, 21092
Gm21112 8 20596464 to 20597041 577 - pseudogene predicted gene, 21112
Gm21119 8 20614919 to 20640703 25784 + protein coding gene predicted gene, 21119
Gm46074 8 20649947 to 20652334 2387 + lncRNA gene predicted gene, 46074
Gm20946 8 20828353 to 20833219 4866 + pseudogene predicted gene, 20946
Gm20797 8 20841352 to 20842350 998 - pseudogene predicted gene, 20797
Gm20945 8 20869506 to 20870650 1144 - pseudogene predicted gene, 20945