Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:15911306-18571508

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Csmd1 8 15892538 to 17535385 1642847 - protein coding gene CUB and Sushi multiple domains 1
Gm46073 8 15933416 to 15934667 1251 + lncRNA gene predicted gene, 46073
Mir3106 8 16168757 to 16168838 81 - miRNA gene microRNA 3106
Gm16346 8 16226003 to 16232305 6302 + antisense lncRNA gene predicted gene 16346
D8Dcr2 8 16246728 to 16246825 97 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 2
Tssr80493 8 16297094 to 16297095 1 - TSS region transcription start site region 80493
Tssr80494 8 16421871 to 16421874 3 - TSS region transcription start site region 80494
Tssr76516 8 16433161 to 16433180 19 + TSS region transcription start site region 76516
Gm16347 8 16433175 to 16437040 3865 + antisense lncRNA gene predicted gene 16347
Gm45393 8 16547242 to 16549872 2630 + unclassified gene predicted gene 45393
Gm18319 8 16581824 to 16582722 898 + pseudogene predicted gene, 18319
Tssr80495 8 16670158 to 16670170 12 - TSS region transcription start site region 80495
Tssr80496 8 16670229 to 16670236 7 - TSS region transcription start site region 80496
Gm45394 8 16751319 to 16752493 1174 + unclassified gene predicted gene 45394
Tssr80497 8 16815686 to 16815689 3 - TSS region transcription start site region 80497
Gm25278 8 16852168 to 16852287 119 + snoRNA gene predicted gene, 25278
3110080E11Rik 8 16912706 to 16916182 3476 - unclassified gene RIKEN cDNA 3110080E11 gene
C030026K05Rik 8 16959940 to 16964158 4218 unclassified gene RIKEN cDNA C030026K05 gene
Tssr80498 8 16992979 to 16992983 4 - TSS region transcription start site region 80498
Poats1 8 17032610 to 28359439 11326829 QTL post-ovarectomy adrenal tumor susceptibility 1
Tssr80499 8 17065438 to 17065464 26 - TSS region transcription start site region 80499
Tssr80500 8 17091098 to 17091099 1 - TSS region transcription start site region 80500
Tssr80501 8 17106661 to 17106664 3 - TSS region transcription start site region 80501
Tssr80502 8 17115063 to 17115065 2 - TSS region transcription start site region 80502
Tssr80503 8 17186907 to 17186917 10 - TSS region transcription start site region 80503
Tssr80504 8 17212973 to 17212975 2 - TSS region transcription start site region 80504
Tssr80505 8 17214841 to 17214860 19 - TSS region transcription start site region 80505
D8Mit219 8 17241306 to 17241508 202 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 219
Tssr80506 8 17270601 to 17270603 2 - TSS region transcription start site region 80506
Gm39136 8 17286531 to 17293135 6604 + lncRNA gene predicted gene, 39136
Tssr80507 8 17290125 to 17290140 15 - TSS region transcription start site region 80507
Lfibq22 8 17328897 to 18316447 987550 QTL liver fibrosis QTL 22
Tssr80508 8 17333309 to 17333321 12 - TSS region transcription start site region 80508
Tssr80509 8 17343624 to 17343627 3 - TSS region transcription start site region 80509
Tssr80510 8 17354891 to 17354900 9 - TSS region transcription start site region 80510
Tssr80511 8 17372133 to 17372143 10 - TSS region transcription start site region 80511
Tssr80512 8 17380927 to 17380938 11 - TSS region transcription start site region 80512
Tssr80513 8 17380955 to 17380968 13 - TSS region transcription start site region 80513
Tssr80514 8 17419715 to 17419720 5 - TSS region transcription start site region 80514
C030002A05Rik 8 17438810 to 17439237 427 unclassified gene RIKEN cDNA C030002A05 gene
Tssr80515 8 17438965 to 17438969 4 - TSS region transcription start site region 80515
D8Mit355.1 8 17451569 to 17451678 109 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 355.1
Tssr80516 8 17459525 to 17459540 15 - TSS region transcription start site region 80516
Tssr80517 8 17466838 to 17466842 4 - TSS region transcription start site region 80517
D8Mit221 8 17517698 to 17517805 107 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 221
Cpgi20133 8 17532429 to 17532924 495 CpG island CpG island 20133
Cpgi20134 8 17534403 to 17535834 1431 CpG island CpG island 20134
Tssr80518 8 17535190 to 17535197 7 - TSS region transcription start site region 80518
Tssr80519 8 17535205 to 17535219 14 - TSS region transcription start site region 80519
Tssr80520 8 17535229 to 17535240 11 - TSS region transcription start site region 80520
Tssr80521 8 17535251 to 17535390 139 - TSS region transcription start site region 80521
Tssr80522 8 17535608 to 17535632 24 - TSS region transcription start site region 80522
Tssr80523 8 17535634 to 17535645 11 - TSS region transcription start site region 80523
Tssr80524 8 17535661 to 17535677 16 - TSS region transcription start site region 80524
Gm39137 8 17562287 to 17574415 12128 + lncRNA gene predicted gene, 39137
D8Mit203 8 17586150 to 17586294 144 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 203
Tssr76517 8 17590516 to 17590544 28 + TSS region transcription start site region 76517
D8Mit172 8 17804003 to 17804256 253 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 172
Gm7724 8 18052917 to 18053666 749 - pseudogene predicted gene 7724
D8Mit22 8 18093267 to 18093416 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 22
Gm25665 8 18274712 to 18274821 109 - snoRNA gene predicted gene, 25665
Tssr80525 8 18296488 to 18296489 1 - TSS region transcription start site region 80525
1700014L14Rik 8 18319523 to 18334338 14815 - lincRNA gene RIKEN cDNA 1700014L14 gene
Tssr80526 8 18334318 to 18334321 3 - TSS region transcription start site region 80526
D8Mit21 8 18369135 to 18369344 209 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 21
D8Mit355 8 18446500 to 18446747 247 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 355
Gm40463 8 18497497 to 18522065 24568 - lncRNA gene predicted gene, 40463
Tssr76518 8 18500723 to 18500726 3 + TSS region transcription start site region 76518
Gm24469 8 18512515 to 18512645 130 - snoRNA gene predicted gene, 24469
Gm35740 8 18541975 to 18545256 3281 - lncRNA gene predicted gene, 35740