Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:4986602-13640928

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756 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
n-R5s93 8 5069259 to 5069377 118 - rRNA gene nuclear encoded rRNA 5S 93
Gm5739 8 5079297 to 5080993 1696 + pseudogene predicted gene 5739
Tssr76144 8 5080192 to 5080204 12 + TSS region transcription start site region 76144
Slc10a2 8 5083219 to 5105287 22068 - protein coding gene solute carrier family 10, member 2
Tssr80286 8 5085607 to 5085611 4 - TSS region transcription start site region 80286
Tssr80287 8 5085929 to 5085963 34 - TSS region transcription start site region 80287
Tssr80288 8 5105240 to 5105254 14 - TSS region transcription start site region 80288
Tssr80289 8 5105326 to 5105337 11 - TSS region transcription start site region 80289
Tssr80290 8 5105347 to 5105358 11 - TSS region transcription start site region 80290
Tssr80291 8 5105401 to 5105409 8 - TSS region transcription start site region 80291
Tssr76145 8 5117299 to 5117322 23 + TSS region transcription start site region 76145
Tssr76146 8 5117324 to 5117351 27 + TSS region transcription start site region 76146
Gm5605 8 5117361 to 5118665 1304 + pseudogene predicted gene 5605
Tssr76147 8 5210767 to 5210770 3 + TSS region transcription start site region 76147
n-R5s94 8 5332995 to 5333113 118 - rRNA gene nuclear encoded rRNA 5S 94
Gm44693 8 5436984 to 5440990 4006 - lincRNA gene predicted gene 44693
Gm6426 8 5527689 to 5528539 850 + pseudogene predicted gene 6426
Tssr76148 8 5578315 to 5578324 9 + TSS region transcription start site region 76148
Tssr76149 8 5639499 to 5639512 13 + TSS region transcription start site region 76149
Tssr76150 8 5639514 to 5639535 21 + TSS region transcription start site region 76150
Gm1840 8 5639580 to 5641008 1428 + pseudogene predicted gene 1840
Tssr76151 8 5640200 to 5640241 41 + TSS region transcription start site region 76151
Tssr76152 8 5640792 to 5640806 14 + TSS region transcription start site region 76152
Gm22565 8 5705427 to 5705495 68 + miRNA gene predicted gene, 22565
D8Mit149 8 5958595 to 5958712 117 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 149
Gm2734 8 5993984 to 5994723 739 - pseudogene predicted gene 2734
Gm44843 8 6034867 to 6036262 1395 + unclassified gene predicted gene 44843
Gm44842 8 6218668 to 6222039 3371 + unclassified gene predicted gene 44842
Gm24288 8 6223819 to 6223962 143 - snoRNA gene predicted gene, 24288
Gm44844 8 6437744 to 6438079 335 + pseudogene predicted gene 44844
Gm44909 8 6830814 to 6830978 164 - pseudogene predicted gene 44909
Gm7506 8 7001941 to 7002755 814 - pseudogene predicted gene 7506
Tssr80292 8 7002766 to 7002788 22 - TSS region transcription start site region 80292
Gm44911 8 7040157 to 7041218 1061 + pseudogene predicted gene 44911
Gm44910 8 7132569 to 7132964 395 - pseudogene predicted gene 44910
D8Mit58 8 7162499 to 7162664 165 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 58
Gm44908 8 7231234 to 7231499 265 + pseudogene predicted gene 44908
Gm17215 8 7381015 to 7428569 47554 + lincRNA gene predicted gene 17215
Gm26427 8 7428222 to 7428328 106 - snRNA gene predicted gene, 26427
Gm30954 8 7468669 to 7580205 111536 - lincRNA gene predicted gene, 30954
Gm27585 8 7521636 to 7521834 198 + unclassified non-coding RNA gene predicted gene, 27585
Gm27545 8 7525256 to 7525457 201 + unclassified non-coding RNA gene predicted gene, 27545
Tssr80293 8 7580203 to 7580211 8 - TSS region transcription start site region 80293
Tssr80294 8 7580230 to 7580241 11 - TSS region transcription start site region 80294
Gm25169 8 7638764 to 7638892 128 + snoRNA gene predicted gene, 25169
Scvg1 8 7701082 to 7701082 0 QTL subcutaneous vessel growth QTL 1
D8Mit333 8 7816371 to 7816451 80 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 333
Gm28262 8 7855847 to 7863406 7559 + unclassified non-coding RNA gene predicted gene 28262
Gm45160 8 7985368 to 7988466 3098 + unclassified gene predicted gene 45160
Tssr80295 8 8021158 to 8021161 3 - TSS region transcription start site region 80295
Gm31401 8 8082540 to 8093215 10675 + lincRNA gene predicted gene, 31401
Tssr80296 8 8226463 to 8226473 10 - TSS region transcription start site region 80296
Gm45076 8 8334081 to 8336213 2132 - lincRNA gene predicted gene 45076
Tssr76153 8 8335065 to 8335080 15 + TSS region transcription start site region 76153
A630009H07Rik 8 8335077 to 8342428 7351 + lincRNA gene RIKEN cDNA A630009H07 gene
Gm31343 8 8377090 to 8391702 14612 + lincRNA gene predicted gene, 31343
Gm31135 8 8436606 to 8484728 48122 - lincRNA gene predicted gene, 31135
Gm2448 8 8454871 to 8455429 558 - pseudogene predicted gene 2448
Tssr80297 8 8457435 to 8457437 2 - TSS region transcription start site region 80297
Tssr80298 8 8484701 to 8484731 30 - TSS region transcription start site region 80298
Tssr80299 8 8484736 to 8484750 14 - TSS region transcription start site region 80299
D530014G21Rik 8 8488302 to 8495535 7233 + lincRNA gene RIKEN cDNA D530014G21 gene
Tssr76154 8 8533654 to 8533663 9 + TSS region transcription start site region 76154
Gm31463 8 8576522 to 8580342 3820 + lincRNA gene predicted gene, 31463
Gm45075 8 8612264 to 8615862 3598 + lincRNA gene predicted gene 45075
Efnb2 8 8617434 to 8661242 43808 - protein coding gene ephrin B2
Tssr80300 8 8617553 to 8617558 5 - TSS region transcription start site region 80300
Tssr80301 8 8618705 to 8618709 4 - TSS region transcription start site region 80301
Cpgi20060 8 8620557 to 8621088 531 CpG island CpG island 20060
Tssr80302 8 8621291 to 8621320 29 - TSS region transcription start site region 80302
E230020D15Rik 8 8629175 to 8635073 5898 - unclassified gene RIKEN cDNA E230020D15 gene
Gm45074 8 8637966 to 8639205 1239 - unclassified gene predicted gene 45074
Gm45073 8 8642766 to 8647012 4246 - unclassified gene predicted gene 45073
Tssr80303 8 8657739 to 8657744 5 - TSS region transcription start site region 80303
Cpgi20061 8 8659450 to 8662099 2649 CpG island CpG island 20061
Tssr80304 8 8661232 to 8661249 17 - TSS region transcription start site region 80304
Tssr76155 8 8661794 to 8661806 12 + TSS region transcription start site region 76155
4921522P10Rik 8 8661801 to 8664728 2927 + lincRNA gene RIKEN cDNA 4921522P10 gene
Tssr76156 8 8661807 to 8661817 10 + TSS region transcription start site region 76156
Tssr76157 8 8661819 to 8661826 7 + TSS region transcription start site region 76157
Arglu1 8 8666297 to 8690549 24252 - protein coding gene arginine and glutamate rich 1
Tssr76158 8 8666573 to 8666579 6 + TSS region transcription start site region 76158
Tssr80305 8 8667128 to 8667136 8 - TSS region transcription start site region 80305
Tssr80306 8 8683091 to 8683099 8 - TSS region transcription start site region 80306
Tssr76159 8 8683856 to 8683938 82 + TSS region transcription start site region 76159
Cpgi20062 8 8689635 to 8690935 1300 CpG island CpG island 20062
Tssr80307 8 8689838 to 8689871 33 - TSS region transcription start site region 80307
Tssr80308 8 8690041 to 8690116 75 - TSS region transcription start site region 80308
Mir7654 8 8690093 to 8690162 69 - miRNA gene microRNA 7654
Tssr80309 8 8690481 to 8690492 11 - TSS region transcription start site region 80309
Tssr80310 8 8690493 to 8690538 45 - TSS region transcription start site region 80310
Tssr76160 8 8693496 to 8693498 2 + TSS region transcription start site region 76160
Cpgi20063 8 8711045 to 8711318 273 CpG island CpG island 20063
Gm18393 8 8711484 to 8712614 1130 + pseudogene predicted gene, 18393
Cpgi20064 8 8711573 to 8711884 311 CpG island CpG island 20064
AU045717 8 8716923 to 8719621 2698 unclassified gene expressed sequence AU045717
Gm44621 8 8716924 to 8721308 4384 - lincRNA gene predicted gene 44621
Gm39127 8 8722957 to 8755164 32207 + lncRNA gene predicted gene, 39127
Gm44626 8 8727111 to 8853647 126536 + lincRNA gene predicted gene 44626
Gm44622 8 8735970 to 8755337 19367 + lincRNA gene predicted gene 44622
Tssr80311 8 8745755 to 8745797 42 - TSS region transcription start site region 80311
Cpgi20065 8 8751257 to 8751540 283 CpG island CpG island 20065
4930540A11Rik 8 8831446 to 8831906 460 unclassified gene RIKEN cDNA 4930540A11 gene
Tssr2484 8 8914781 to 8914783 2 + TSS region transcription start site region 2484
Gm44515 8 8920937 to 8932699 11762 - lincRNA gene predicted gene 44515
Cpgi20066 8 8969705 to 8969859 154 CpG island CpG island 20066
Tssr80312 8 8969775 to 8969788 13 - TSS region transcription start site region 80312
Cpgi20067 8 8999505 to 8999715 210 CpG island CpG island 20067
4933430N04Rik 8 9125412 to 9132288 6876 - lncRNA gene RIKEN cDNA 4933430N04 gene
Gm31810 8 9141110 to 9144570 3460 - lncRNA gene predicted gene, 31810
Tssr80313 8 9144531 to 9144555 24 - TSS region transcription start site region 80313
Tssr76161 8 9144600 to 9144641 41 + TSS region transcription start site region 76161
4930453L07Rik 8 9144669 to 9149050 4381 + lincRNA gene RIKEN cDNA 4930453L07 gene
Gm31726 8 9148011 to 9152138 4127 - lncRNA gene predicted gene, 31726
Gm44516 8 9152600 to 9157221 4621 - lincRNA gene predicted gene 44516
Gm39128 8 9167556 to 9174779 7223 + lincRNA gene predicted gene, 39128
D8Mit157 8 9167851 to 9167991 140 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 157
Fam155a 8 9205902 to 9771161 565259 - protein coding gene family with sequence similarity 155, member A
Tssr80314 8 9207276 to 9207295 19 - TSS region transcription start site region 80314
Tssr80315 8 9207368 to 9207382 14 - TSS region transcription start site region 80315
Cpgi20068 8 9207627 to 9207993 366 CpG island CpG island 20068
Gm44542 8 9213097 to 9217410 4313 - unclassified gene predicted gene 44542
Gm44541 8 9342220 to 9345126 2906 - unclassified gene predicted gene 44541
Gm44518 8 9370957 to 9375326 4369 - unclassified gene predicted gene 44518
Tssr80316 8 9394044 to 9394048 4 - TSS region transcription start site region 80316
Tssr80317 8 9414846 to 9414859 13 - TSS region transcription start site region 80317
Tssr76162 8 9417990 to 9417993 3 + TSS region transcription start site region 76162
Tssr80318 8 9428665 to 9428672 7 - TSS region transcription start site region 80318
4930435N07Rik 8 9459092 to 9461218 2126 + unclassified gene RIKEN cDNA 4930435N07 gene
Tssr2485 8 9506265 to 9506275 10 + TSS region transcription start site region 2485
Tssr80319 8 9545190 to 9545200 10 - TSS region transcription start site region 80319
Tssr80320 8 9559183 to 9559206 23 - TSS region transcription start site region 80320
Tssr80321 8 9559234 to 9559251 17 - TSS region transcription start site region 80321
Tssr80322 8 9559257 to 9559269 12 - TSS region transcription start site region 80322
Tssr80323 8 9559294 to 9559334 40 - TSS region transcription start site region 80323
n-R5s95 8 9568132 to 9568249 117 - rRNA gene nuclear encoded rRNA 5S 95
Tssr80324 8 9589586 to 9589590 4 - TSS region transcription start site region 80324
Gm44797 8 9595109 to 9596945 1836 - unclassified gene predicted gene 44797
Gm44800 8 9598799 to 9600653 1854 - unclassified gene predicted gene 44800
Gm44801 8 9603823 to 9605882 2059 - unclassified gene predicted gene 44801
Gm44798 8 9618153 to 9620562 2409 - unclassified gene predicted gene 44798
Tssr80325 8 9625132 to 9625150 18 - TSS region transcription start site region 80325
1700027A13Rik 8 9628101 to 9628418 317 unclassified gene RIKEN cDNA 1700027A13 gene
Gm44799 8 9658248 to 9659449 1201 - unclassified gene predicted gene 44799
Tssr80326 8 9672681 to 9672697 16 - TSS region transcription start site region 80326
2900027M19Rik 8 9685829 to 9690276 4447 - unclassified non-coding RNA gene RIKEN cDNA 2900027M19 gene
Tssr80327 8 9702589 to 9702592 3 - TSS region transcription start site region 80327
Gm44802 8 9709171 to 9711086 1915 - unclassified gene predicted gene 44802
Tssr80328 8 9727182 to 9727186 4 - TSS region transcription start site region 80328
Tssr80329 8 9728021 to 9728047 26 - TSS region transcription start site region 80329
Tssr80330 8 9758548 to 9758576 28 - TSS region transcription start site region 80330
Tssr80331 8 9762473 to 9762493 20 - TSS region transcription start site region 80331
Cpgi20069 8 9770015 to 9772668 2653 CpG island CpG island 20069
Gm47312 8 9770728 to 9770880 152 - miRNA gene predicted gene, 47312
Tssr80332 8 9771486 to 9771525 39 - TSS region transcription start site region 80332
Cpgi20070 8 9797170 to 9797389 219 CpG island CpG island 20070
Cpgi20071 8 9797890 to 9798080 190 CpG island CpG island 20071
Gm44761 8 9800194 to 9811974 11780 + lincRNA gene predicted gene 44761
Gm10217 8 9864251 to 9870315 6064 + protein coding gene predicted gene 10217
Gm10067 8 9875530 to 9919463 43933 - lincRNA gene predicted gene 10067
Lig4 8 9970020 to 9977681 7661 - protein coding gene ligase IV, DNA, ATP-dependent
Cpgi20072 8 9976032 to 9976613 581 CpG island CpG island 20072
Tssr80333 8 9976215 to 9976254 39 - TSS region transcription start site region 80333
Tssr80334 8 9976266 to 9976286 20 - TSS region transcription start site region 80334
Tssr80335 8 9976294 to 9976335 41 - TSS region transcription start site region 80335
Tssr80336 8 9976340 to 9976355 15 - TSS region transcription start site region 80336
Cpgi20073 8 9977548 to 9978595 1047 CpG island CpG island 20073
Tssr80337 8 9977650 to 9977690 40 - TSS region transcription start site region 80337
Tssr76163 8 9977711 to 9977725 14 + TSS region transcription start site region 76163
Abhd13 8 9977717 to 9992155 14438 + protein coding gene abhydrolase domain containing 13
Tssr76164 8 9977733 to 9977763 30 + TSS region transcription start site region 76164
Tssr76165 8 9977766 to 9977788 22 + TSS region transcription start site region 76165
Tssr76166 8 9977810 to 9977848 38 + TSS region transcription start site region 76166
Tssr76167 8 9977851 to 9977872 21 + TSS region transcription start site region 76167
Gm10703 8 10003512 to 10007538 4026 protein coding gene predicted gene 10703
Tnfsf13b 8 10006203 to 10036000 29797 + protein coding gene tumor necrosis factor (ligand) superfamily, member 13b
Tssr76168 8 10006428 to 10006455 27 + TSS region transcription start site region 76168
Tssr76169 8 10006631 to 10006653 22 + TSS region transcription start site region 76169
Tssr76170 8 10006656 to 10006702 46 + TSS region transcription start site region 76170
Tssr76171 8 10006784 to 10006810 26 + TSS region transcription start site region 76171
Cpgi20074 8 10007070 to 10007574 504 CpG island CpG island 20074
Gm44789 8 10016427 to 10019527 3100 - unclassified gene predicted gene 44789
Gm44788 8 10065054 to 10119632 54578 + lincRNA gene predicted gene 44788
Cpgi20075 8 10153657 to 10154434 777 CpG island CpG island 20075
Myo16 8 10153911 to 10634742 480831 + protein coding gene myosin XVI
Tssr76172 8 10153940 to 10153984 44 + TSS region transcription start site region 76172
Tssr76173 8 10154096 to 10154158 62 + TSS region transcription start site region 76173
Tssr76174 8 10183313 to 10183334 21 + TSS region transcription start site region 76174
Tssr76175 8 10249189 to 10249200 11 + TSS region transcription start site region 76175
Cpgi20076 8 10249309 to 10249519 210 CpG island CpG island 20076
Tssr76176 8 10249334 to 10249366 32 + TSS region transcription start site region 76176
D8Mit285 8 10254729 to 10254814 85 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 285
Tssr76177 8 10435789 to 10435799 10 + TSS region transcription start site region 76177
Tssr76178 8 10481124 to 10481136 12 + TSS region transcription start site region 76178
Tssr76179 8 10481146 to 10481164 18 + TSS region transcription start site region 76179
Tssr80338 8 10483937 to 10483948 11 - TSS region transcription start site region 80338
Tssr80339 8 10483958 to 10483970 12 - TSS region transcription start site region 80339
Tssr80340 8 10484007 to 10484016 9 - TSS region transcription start site region 80340
Tssr76180 8 10484084 to 10484101 17 + TSS region transcription start site region 76180
Tssr80341 8 10534902 to 10534916 14 - TSS region transcription start site region 80341