Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:13516308-13836493

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm5608 8 13537678 to 13547028 9350 - lincRNA gene predicted gene 5608
Tssr80451 8 13548950 to 13548964 14 - TSS region transcription start site region 80451
Tssr80452 8 13548975 to 13548982 7 - TSS region transcription start site region 80452
Tssr80453 8 13548989 to 13548998 9 - TSS region transcription start site region 80453
Tssr80454 8 13550246 to 13550254 8 - TSS region transcription start site region 80454
1700029H14Rik 8 13550733 to 13562461 11728 - protein coding gene RIKEN cDNA 1700029H14 gene
Tssr80455 8 13562397 to 13562410 13 - TSS region transcription start site region 80455
Rasa3 8 13567218 to 13677587 110369 - protein coding gene RAS p21 protein activator 3
Tssr80456 8 13584015 to 13584016 1 - TSS region transcription start site region 80456
Tssr80457 8 13584029 to 13584052 23 - TSS region transcription start site region 80457
Tssr76414 8 13584141 to 13584149 8 + TSS region transcription start site region 76414
Tssr76415 8 13584167 to 13584170 3 + TSS region transcription start site region 76415
Gm34795 8 13590313 to 13591997 1684 + lncRNA gene predicted gene, 34795
Tssr80458 8 13594954 to 13594983 29 - TSS region transcription start site region 80458
Tssr76416 8 13595118 to 13595130 12 + TSS region transcription start site region 76416
Tssr2501 8 13600595 to 13600608 13 + TSS region transcription start site region 2501
Tssr76417 8 13600624 to 13600643 19 + TSS region transcription start site region 76417
D8Mit60 8 13650751 to 13650928 177 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 60
nr 8 13650928 to 4976602 -8674326 heritable phenotypic marker nervous
Cpgi20114 8 13670174 to 13670414 240 CpG island CpG island 20114
4930442M18Rik 8 13672925 to 13676868 3943 unclassified gene RIKEN cDNA 4930442M18 gene
Tssr76418 8 13674489 to 13674526 37 + TSS region transcription start site region 76418
Cpgi20115 8 13676308 to 13676493 185 CpG island CpG island 20115
Tssr80459 8 13676366 to 13676391 25 - TSS region transcription start site region 80459
Cpgi20116 8 13676796 to 13677950 1154 CpG island CpG island 20116
Tssr80460 8 13677512 to 13677519 7 - TSS region transcription start site region 80460
Tssr80461 8 13677536 to 13677553 17 - TSS region transcription start site region 80461
Tssr80462 8 13677575 to 13677592 17 - TSS region transcription start site region 80462
Tssr76419 8 13677775 to 13677827 52 + TSS region transcription start site region 76419
Gm46032 8 13682868 to 13785106 102238 - lncRNA gene predicted gene, 46032
Tssr80463 8 13686557 to 13686562 5 - TSS region transcription start site region 80463
Tssr76420 8 13686677 to 13686683 6 + TSS region transcription start site region 76420
Tssr76421 8 13686773 to 13686785 12 + TSS region transcription start site region 76421
Tssr76422 8 13705884 to 13705952 68 + TSS region transcription start site region 76422
Cfap97d2 8 13705889 to 13743414 37525 + protein coding gene CFAP97 domain containing 2
Gm7669 8 13745876 to 13747478 1602 - pseudogene predicted gene 7669
Cpgi20117 8 13757461 to 13758175 714 CpG island CpG island 20117
Tssr76423 8 13757663 to 13757714 51 + TSS region transcription start site region 76423
Cdc16 8 13757676 to 13781938 24262 + protein coding gene CDC16 cell division cycle 16
Tssr76424 8 13757716 to 13757723 7 + TSS region transcription start site region 76424
Tssr76425 8 13771366 to 13771389 23 + TSS region transcription start site region 76425
Tssr76426 8 13780791 to 13780801 10 + TSS region transcription start site region 76426
Cpgi20118 8 13785212 to 13786563 1351 CpG island CpG island 20118
Upf3a 8 13785233 to 13798538 13305 + protein coding gene UPF3 regulator of nonsense transcripts homolog A (yeast)
Tssr80464 8 13785482 to 13785502 20 - TSS region transcription start site region 80464
Tssr76427 8 13785620 to 13785661 41 + TSS region transcription start site region 76427
Tssr76428 8 13792137 to 13792160 23 + TSS region transcription start site region 76428
AF366264 8 13835229 to 13838089 2860 - protein coding gene cDNA sequence AF366264