Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:13346979-15266980

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256 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tfdp1 8 13338751 to 13378448 39697 + protein coding gene transcription factor Dp 1
Tssr80439 8 13351007 to 13351011 4 - TSS region transcription start site region 80439
Tssr76396 8 13351651 to 13351657 6 + TSS region transcription start site region 76396
Tssr76397 8 13351743 to 13351770 27 + TSS region transcription start site region 76397
Tssr76398 8 13354436 to 13354448 12 + TSS region transcription start site region 76398
Atp4b 8 13386209 to 13396778 10569 - protein coding gene ATPase, H+/K+ exchanging, beta polypeptide
Tssr76399 8 13386643 to 13386652 9 + TSS region transcription start site region 76399
Tssr80440 8 13387475 to 13387494 19 - TSS region transcription start site region 80440
Tssr80441 8 13388798 to 13388815 17 - TSS region transcription start site region 80441
Tssr80442 8 13389693 to 13389702 9 - TSS region transcription start site region 80442
Tssr80443 8 13389859 to 13389866 7 - TSS region transcription start site region 80443
Tssr80444 8 13390099 to 13390103 4 - TSS region transcription start site region 80444
Gm45410 8 13391106 to 13392198 1092 + unclassified gene predicted gene 45410
Tssr80445 8 13396769 to 13396783 14 - TSS region transcription start site region 80445
D8Mit17 8 13397210 to 13397432 222 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 17
Sluc42 8 13397210 to 34854071 21456861 QTL susceptibility to lung cancer 42
Mts5 8 13397210 to 13397432 222 QTL mammary tumor susceptibility 5
Tssr76400 8 13404906 to 13404912 6 + TSS region transcription start site region 76400
Tssr76401 8 13404940 to 13404950 10 + TSS region transcription start site region 76401
Tssr76402 8 13405080 to 13405098 18 + TSS region transcription start site region 76402
Grk1 8 13405081 to 13421951 16870 + protein coding gene G protein-coupled receptor kinase 1
Tssr76403 8 13405116 to 13405122 6 + TSS region transcription start site region 76403
Tssr76404 8 13414266 to 13414279 13 + TSS region transcription start site region 76404
Tssr76405 8 13414289 to 13414295 6 + TSS region transcription start site region 76405
Tssr2498 8 13414299 to 13414308 9 + TSS region transcription start site region 2498
Tssr76406 8 13425469 to 13425503 34 + TSS region transcription start site region 76406
D8Mit254 8 13426432 to 13426548 116 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 254
Tssr2499 8 13435110 to 13435117 7 + TSS region transcription start site region 2499
Tssr76407 8 13435134 to 13435159 25 + TSS region transcription start site region 76407
Tssr76408 8 13435173 to 13435186 13 + TSS region transcription start site region 76408
Tmem255b 8 13435189 to 13468473 33284 + protein coding gene transmembrane protein 255B
Tssr76409 8 13435468 to 13435503 35 + TSS region transcription start site region 76409
Tssr76410 8 13435504 to 13435518 14 + TSS region transcription start site region 76410
Tssr76411 8 13435598 to 13435609 11 + TSS region transcription start site region 76411
Gas6 8 13465374 to 13494490 29116 - protein coding gene growth arrest specific 6
Tssr80446 8 13471067 to 13471068 1 - TSS region transcription start site region 80446
Tssr80447 8 13471510 to 13471535 25 - TSS region transcription start site region 80447
Tssr80448 8 13476143 to 13476153 10 - TSS region transcription start site region 80448
Tssr76412 8 13483706 to 13483711 5 + TSS region transcription start site region 76412
Cpgi20113 8 13493652 to 13494652 1000 CpG island CpG island 20113
Tssr80449 8 13494479 to 13494546 67 - TSS region transcription start site region 80449
Tssr80450 8 13501300 to 13501334 34 - TSS region transcription start site region 80450
Tssr76413 8 13507184 to 13507193 9 + TSS region transcription start site region 76413
Tssr2500 8 13507448 to 13507461 13 + TSS region transcription start site region 2500
Gm5608 8 13537678 to 13547028 9350 - lincRNA gene predicted gene 5608
Tssr80451 8 13548950 to 13548964 14 - TSS region transcription start site region 80451
Tssr80452 8 13548975 to 13548982 7 - TSS region transcription start site region 80452
Tssr80453 8 13548989 to 13548998 9 - TSS region transcription start site region 80453
Tssr80454 8 13550246 to 13550254 8 - TSS region transcription start site region 80454
1700029H14Rik 8 13550733 to 13562461 11728 - protein coding gene RIKEN cDNA 1700029H14 gene
Tssr80455 8 13562397 to 13562410 13 - TSS region transcription start site region 80455
Rasa3 8 13567218 to 13677587 110369 - protein coding gene RAS p21 protein activator 3
Tssr80456 8 13584015 to 13584016 1 - TSS region transcription start site region 80456
Tssr80457 8 13584029 to 13584052 23 - TSS region transcription start site region 80457
Tssr76414 8 13584141 to 13584149 8 + TSS region transcription start site region 76414
Tssr76415 8 13584167 to 13584170 3 + TSS region transcription start site region 76415
Gm34795 8 13590313 to 13591997 1684 + lncRNA gene predicted gene, 34795
Tssr80458 8 13594954 to 13594983 29 - TSS region transcription start site region 80458
Tssr76416 8 13595118 to 13595130 12 + TSS region transcription start site region 76416
Tssr2501 8 13600595 to 13600608 13 + TSS region transcription start site region 2501
Tssr76417 8 13600624 to 13600643 19 + TSS region transcription start site region 76417
D8Mit60 8 13650751 to 13650928 177 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 60
nr 8 13650928 to 4976602 -8674326 heritable phenotypic marker nervous
Cpgi20114 8 13670174 to 13670414 240 CpG island CpG island 20114
4930442M18Rik 8 13672925 to 13676868 3943 unclassified gene RIKEN cDNA 4930442M18 gene
Tssr76418 8 13674489 to 13674526 37 + TSS region transcription start site region 76418
Cpgi20115 8 13676308 to 13676493 185 CpG island CpG island 20115
Tssr80459 8 13676366 to 13676391 25 - TSS region transcription start site region 80459
Cpgi20116 8 13676796 to 13677950 1154 CpG island CpG island 20116
Tssr80460 8 13677512 to 13677519 7 - TSS region transcription start site region 80460
Tssr80461 8 13677536 to 13677553 17 - TSS region transcription start site region 80461
Tssr80462 8 13677575 to 13677592 17 - TSS region transcription start site region 80462
Tssr76419 8 13677775 to 13677827 52 + TSS region transcription start site region 76419
Gm46032 8 13682868 to 13785106 102238 - lncRNA gene predicted gene, 46032
Tssr80463 8 13686557 to 13686562 5 - TSS region transcription start site region 80463
Tssr76420 8 13686677 to 13686683 6 + TSS region transcription start site region 76420
Tssr76421 8 13686773 to 13686785 12 + TSS region transcription start site region 76421
Tssr76422 8 13705884 to 13705952 68 + TSS region transcription start site region 76422
Cfap97d2 8 13705889 to 13743414 37525 + protein coding gene CFAP97 domain containing 2
Gm7669 8 13745876 to 13747478 1602 - pseudogene predicted gene 7669
Cpgi20117 8 13757461 to 13758175 714 CpG island CpG island 20117
Tssr76423 8 13757663 to 13757714 51 + TSS region transcription start site region 76423
Cdc16 8 13757676 to 13781938 24262 + protein coding gene CDC16 cell division cycle 16
Tssr76424 8 13757716 to 13757723 7 + TSS region transcription start site region 76424
Tssr76425 8 13771366 to 13771389 23 + TSS region transcription start site region 76425
Tssr76426 8 13780791 to 13780801 10 + TSS region transcription start site region 76426
Cpgi20118 8 13785212 to 13786563 1351 CpG island CpG island 20118
Upf3a 8 13785233 to 13798538 13305 + protein coding gene UPF3 regulator of nonsense transcripts homolog A (yeast)
Tssr80464 8 13785482 to 13785502 20 - TSS region transcription start site region 80464
Tssr76427 8 13785620 to 13785661 41 + TSS region transcription start site region 76427
Tssr76428 8 13792137 to 13792160 23 + TSS region transcription start site region 76428
AF366264 8 13835229 to 13838089 2860 - protein coding gene cDNA sequence AF366264
Tssr80465 8 13838557 to 13838565 8 - TSS region transcription start site region 80465
Cpgi20119 8 13869569 to 13870387 818 CpG island CpG island 20119
Champ1 8 13869641 to 13881639 11998 + protein coding gene chromosome alignment maintaining phosphoprotein 1
Tssr76429 8 13869673 to 13869740 67 + TSS region transcription start site region 76429
Gm47277 8 13876091 to 13876184 93 + miRNA gene predicted gene, 47277
Gm24698 8 13876097 to 13876226 129 + snoRNA gene predicted gene, 24698
Coprs 8 13884794 to 13890281 5487 - protein coding gene coordinator of PRMT5, differentiation stimulator
Cpgi20120 8 13889636 to 13890673 1037 CpG island CpG island 20120
Tssr80466 8 13889984 to 13890000 16 - TSS region transcription start site region 80466
Tssr80467 8 13890233 to 13890300 67 - TSS region transcription start site region 80467
Tssr76430 8 13896282 to 13896287 5 + TSS region transcription start site region 76430
Gm7676 8 13896311 to 13896629 318 + pseudogene predicted gene 7676
Tssr76431 8 13896464 to 13896477 13 + TSS region transcription start site region 76431
Cpgi20121 8 13907280 to 13908239 959 CpG island CpG island 20121
Tssr76432 8 13907736 to 13907745 9 + TSS region transcription start site region 76432
Tssr76433 8 13907748 to 13907816 68 + TSS region transcription start site region 76433
Fbxo25 8 13907803 to 13940522 32719 + protein coding gene F-box protein 25
Tssr76434 8 13907827 to 13907837 10 + TSS region transcription start site region 76434
Tdrp 8 13952008 to 13975032 23024 - protein coding gene testis development related protein
Cpgi20122 8 13974137 to 13975329 1192 CpG island CpG island 20122
Tssr80468 8 13974676 to 13974698 22 - TSS region transcription start site region 80468
Tssr80469 8 13974715 to 13974737 22 - TSS region transcription start site region 80469
Tssr80470 8 13974923 to 13974946 23 - TSS region transcription start site region 80470
Tssr80471 8 13974953 to 13974969 16 - TSS region transcription start site region 80471
Tssr80472 8 13975045 to 13975074 29 - TSS region transcription start site region 80472
Gm5907 8 13986090 to 14003561 17471 + lincRNA gene predicted gene 5907
Gm34966 8 13996369 to 14018303 21934 - lncRNA gene predicted gene, 34966
Tssr76435 8 14017418 to 14017419 1 + TSS region transcription start site region 76435
Gm39134 8 14022030 to 14025440 3410 - lncRNA gene predicted gene, 39134
Erich1 8 14027561 to 14090301 62740 - protein coding gene glutamate rich 1
Tssr80473 8 14029551 to 14029564 13 - TSS region transcription start site region 80473
Gm45520 8 14065788 to 14067818 2030 - unclassified gene predicted gene 45520
Cpgi20123 8 14089912 to 14090927 1015 CpG island CpG island 20123
Tssr80474 8 14090280 to 14090304 24 - TSS region transcription start site region 80474
Tssr80475 8 14090310 to 14090334 24 - TSS region transcription start site region 80475
Gm10699 8 14090461 to 14092590 2129 + protein coding gene predicted gene 10699
Tssr76436 8 14090470 to 14090501 31 + TSS region transcription start site region 76436
Cpgi20124 8 14095297 to 14097356 2059 CpG island CpG island 20124
Tssr80476 8 14095641 to 14095655 14 - TSS region transcription start site region 80476
Tssr80477 8 14095659 to 14095671 12 - TSS region transcription start site region 80477
Tssr76437 8 14095849 to 14095915 66 + TSS region transcription start site region 76437
Dlgap2 8 14095865 to 14847680 751815 + protein coding gene DLG associated protein 2
Tssr76438 8 14095981 to 14095993 12 + TSS region transcription start site region 76438
Tssr76439 8 14136152 to 14136155 3 + TSS region transcription start site region 76439
Gm3160 8 14136310 to 14136916 606 + pseudogene predicted pseudogene 3160
Tssr76440 8 14247152 to 14247170 18 + TSS region transcription start site region 76440
Tssr76441 8 14270724 to 14270726 2 + TSS region transcription start site region 76441
Gm26184 8 14273181 to 14273311 130 - snoRNA gene predicted gene, 26184
D8Mit253 8 14281088 to 14281188 100 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 253
Tssr76442 8 14303416 to 14303420 4 + TSS region transcription start site region 76442
Tssr80478 8 14306979 to 14306980 1 - TSS region transcription start site region 80478
Tssr76443 8 14326630 to 14326634 4 + TSS region transcription start site region 76443
Gm44347 8 14350178 to 14350285 107 + miRNA gene predicted gene, 44347
Tssr76444 8 14353752 to 14353753 1 + TSS region transcription start site region 76444
Tssr76445 8 14354454 to 14354457 3 + TSS region transcription start site region 76445
Tssr76446 8 14370156 to 14370181 25 + TSS region transcription start site region 76446
Tssr76447 8 14381727 to 14381745 18 + TSS region transcription start site region 76447
Tssr76448 8 14381943 to 14382003 60 + TSS region transcription start site region 76448
Tssr76449 8 14450021 to 14450045 24 + TSS region transcription start site region 76449
Tssr76450 8 14534462 to 14534475 13 + TSS region transcription start site region 76450
Tssr2502 8 14596619 to 14596638 19 - TSS region transcription start site region 2502
Tssr76451 8 14604575 to 14604593 18 + TSS region transcription start site region 76451
Tssr76452 8 14651709 to 14651733 24 + TSS region transcription start site region 76452
Nilac5 8 14723160 to 14723288 128 QTL nicotine induced locomotor activity 5
D8Mit124 8 14723160 to 14723288 128 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 124
Eae36 8 14723160 to 71045600 56322440 QTL experimental allergic encephalomyelitis susceptibility 36
C030037F17Rik 8 14745329 to 14747427 2098 - antisense lncRNA gene RIKEN cDNA C030037F17 gene
Tssr76453 8 14777767 to 14777789 22 + TSS region transcription start site region 76453
Tssr76454 8 14849922 to 14849935 13 + TSS region transcription start site region 76454
Tssr80479 8 14872117 to 14872119 2 - TSS region transcription start site region 80479
Cln8 8 14881335 to 14901720 20385 + protein coding gene ceroid-lipofuscinosis, neuronal 8
Tssr76455 8 14881568 to 14881575 7 + TSS region transcription start site region 76455
Tssr76456 8 14881619 to 14881626 7 + TSS region transcription start site region 76456
Tssr76457 8 14881629 to 14881657 28 + TSS region transcription start site region 76457
Tssr76458 8 14888022 to 14888037 15 + TSS region transcription start site region 76458
Cpgi20125 8 14888146 to 14889475 1329 CpG island CpG island 20125
Tssr76459 8 14888836 to 14888874 38 + TSS region transcription start site region 76459
Tssr76460 8 14888877 to 14888900 23 + TSS region transcription start site region 76460
Tssr76461 8 14888950 to 14888961 11 + TSS region transcription start site region 76461
Tssr76462 8 14888996 to 14889013 17 + TSS region transcription start site region 76462
Tssr76463 8 14889027 to 14889075 48 + TSS region transcription start site region 76463
Cpgi20126 8 14894465 to 14895036 571 CpG island CpG island 20126
Tssr76464 8 14897198 to 14897228 30 + TSS region transcription start site region 76464
Tssr76465 8 14898080 to 14898105 25 + TSS region transcription start site region 76465
Tssr76466 8 14906399 to 14906414 15 + TSS region transcription start site region 76466
4930513N24Rik 8 14910589 to 14911491 902 unclassified gene RIKEN cDNA 4930513N24 gene
Cpgi20127 8 14911070 to 14912393 1323 CpG island CpG island 20127
Arhgef10 8 14911663 to 15001085 89422 + protein coding gene Rho guanine nucleotide exchange factor (GEF) 10
Tssr76467 8 14911668 to 14911677 9 + TSS region transcription start site region 76467
Tssr76468 8 14911704 to 14911742 38 + TSS region transcription start site region 76468
Gm35285 8 14947271 to 14953177 5906 - lncRNA gene predicted gene, 35285
Gm16350 8 14961066 to 14961586 520 - antisense lncRNA gene predicted gene 16350
Tssr80480 8 14961573 to 14961590 17 - TSS region transcription start site region 80480
Tssr76469 8 14961813 to 14961822 9 + TSS region transcription start site region 76469
Tssr76470 8 14961880 to 14961899 19 + TSS region transcription start site region 76470
Tssr76471 8 14961901 to 14961913 12 + TSS region transcription start site region 76471
Tssr76472 8 14974966 to 14974976 10 + TSS region transcription start site region 76472
Tssr80481 8 14989671 to 14989675 4 - TSS region transcription start site region 80481
Tssr76473 8 14992992 to 14993010 18 + TSS region transcription start site region 76473
Gm35149 8 14994134 to 14996912 2778 - lncRNA gene predicted gene, 35149
Tssr80482 8 14994485 to 14994500 15 - TSS region transcription start site region 80482
Tssr76474 8 14994647 to 14994658 11 + TSS region transcription start site region 76474
Tssr80483 8 14995994 to 14996011 17 - TSS region transcription start site region 80483
Tssr76475 8 14996128 to 14996144 16 + TSS region transcription start site region 76475
Tssr76476 8 14996156 to 14996157 1 + TSS region transcription start site region 76476
Tssr76477 8 14997000 to 14997016 16 + TSS region transcription start site region 76477
Tssr80484 8 14998614 to 14998618 4 - TSS region transcription start site region 80484
Cpgi20128 8 15010780 to 15012205 1425 CpG island CpG island 20128