Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:13240313-13941997

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Adprhl1 8 13221663 to 13254162 32499 - protein coding gene ADP-ribosylhydrolase like 1
Tssr80430 8 13254032 to 13254043 11 - TSS region transcription start site region 80430
Tssr80431 8 13254068 to 13254085 17 - TSS region transcription start site region 80431
Tssr80432 8 13254104 to 13254119 15 - TSS region transcription start site region 80432
Tssr80433 8 13254121 to 13254150 29 - TSS region transcription start site region 80433
Tssr80434 8 13254154 to 13254168 14 - TSS region transcription start site region 80434
Tssr80435 8 13254176 to 13254188 12 - TSS region transcription start site region 80435
Tssr80436 8 13254246 to 13254269 23 - TSS region transcription start site region 80436
Dcun1d2 8 13255963 to 13288126 32163 - protein coding gene DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)
E330037G11Rik 8 13264102 to 13265187 1085 - unclassified gene RIKEN cDNA E330037G11 gene
Gm25014 8 13283115 to 13283217 102 - snRNA gene predicted gene, 25014
9530085L11Rik 8 13285352 to 13287466 2114 - unclassified gene RIKEN cDNA 9530085L11 gene
Cpgi20111 8 13287078 to 13288513 1435 CpG island CpG island 20111
Tssr80437 8 13287814 to 13287856 42 - TSS region transcription start site region 80437
Tssr76388 8 13287887 to 13287929 42 + TSS region transcription start site region 76388
Tssr76389 8 13288173 to 13288220 47 + TSS region transcription start site region 76389
Tmco3 8 13288190 to 13322924 34734 + protein coding gene transmembrane and coiled-coil domains 3
Tssr76390 8 13288237 to 13288263 26 + TSS region transcription start site region 76390
Tssr76391 8 13288283 to 13288290 7 + TSS region transcription start site region 76391
Tssr76392 8 13292689 to 13292727 38 + TSS region transcription start site region 76392
Tssr80438 8 13306660 to 13306661 1 - TSS region transcription start site region 80438
Cpgi20112 8 13337933 to 13339763 1830 CpG island CpG island 20112
Tssr76393 8 13338745 to 13338756 11 + TSS region transcription start site region 76393
Tfdp1 8 13338751 to 13378448 39697 + protein coding gene transcription factor Dp 1
Tssr76394 8 13338760 to 13338817 57 + TSS region transcription start site region 76394
Tssr76395 8 13339656 to 13339661 5 + TSS region transcription start site region 76395
Tssr80439 8 13351007 to 13351011 4 - TSS region transcription start site region 80439
Tssr76396 8 13351651 to 13351657 6 + TSS region transcription start site region 76396
Tssr76397 8 13351743 to 13351770 27 + TSS region transcription start site region 76397
Tssr76398 8 13354436 to 13354448 12 + TSS region transcription start site region 76398
Atp4b 8 13386209 to 13396778 10569 - protein coding gene ATPase, H+/K+ exchanging, beta polypeptide
Tssr76399 8 13386643 to 13386652 9 + TSS region transcription start site region 76399
Tssr80440 8 13387475 to 13387494 19 - TSS region transcription start site region 80440
Tssr80441 8 13388798 to 13388815 17 - TSS region transcription start site region 80441
Tssr80442 8 13389693 to 13389702 9 - TSS region transcription start site region 80442
Tssr80443 8 13389859 to 13389866 7 - TSS region transcription start site region 80443
Tssr80444 8 13390099 to 13390103 4 - TSS region transcription start site region 80444
Gm45410 8 13391106 to 13392198 1092 + unclassified gene predicted gene 45410
Tssr80445 8 13396769 to 13396783 14 - TSS region transcription start site region 80445
Mts5 8 13397210 to 13397432 222 QTL mammary tumor susceptibility 5
Sluc42 8 13397210 to 34854071 21456861 QTL susceptibility to lung cancer 42
D8Mit17 8 13397210 to 13397432 222 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 17
Tssr76400 8 13404906 to 13404912 6 + TSS region transcription start site region 76400
Tssr76401 8 13404940 to 13404950 10 + TSS region transcription start site region 76401
Tssr76402 8 13405080 to 13405098 18 + TSS region transcription start site region 76402
Grk1 8 13405081 to 13421951 16870 + protein coding gene G protein-coupled receptor kinase 1
Tssr76403 8 13405116 to 13405122 6 + TSS region transcription start site region 76403
Tssr76404 8 13414266 to 13414279 13 + TSS region transcription start site region 76404
Tssr76405 8 13414289 to 13414295 6 + TSS region transcription start site region 76405
Tssr2498 8 13414299 to 13414308 9 + TSS region transcription start site region 2498
Tssr76406 8 13425469 to 13425503 34 + TSS region transcription start site region 76406
D8Mit254 8 13426432 to 13426548 116 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 254
Tssr2499 8 13435110 to 13435117 7 + TSS region transcription start site region 2499
Tssr76407 8 13435134 to 13435159 25 + TSS region transcription start site region 76407
Tssr76408 8 13435173 to 13435186 13 + TSS region transcription start site region 76408
Tmem255b 8 13435189 to 13468473 33284 + protein coding gene transmembrane protein 255B
Tssr76409 8 13435468 to 13435503 35 + TSS region transcription start site region 76409
Tssr76410 8 13435504 to 13435518 14 + TSS region transcription start site region 76410
Tssr76411 8 13435598 to 13435609 11 + TSS region transcription start site region 76411
Gas6 8 13465374 to 13494490 29116 - protein coding gene growth arrest specific 6
Tssr80446 8 13471067 to 13471068 1 - TSS region transcription start site region 80446
Tssr80447 8 13471510 to 13471535 25 - TSS region transcription start site region 80447
Tssr80448 8 13476143 to 13476153 10 - TSS region transcription start site region 80448
Tssr76412 8 13483706 to 13483711 5 + TSS region transcription start site region 76412
Cpgi20113 8 13493652 to 13494652 1000 CpG island CpG island 20113
Tssr80449 8 13494479 to 13494546 67 - TSS region transcription start site region 80449
Tssr80450 8 13501300 to 13501334 34 - TSS region transcription start site region 80450
Tssr76413 8 13507184 to 13507193 9 + TSS region transcription start site region 76413
Tssr2500 8 13507448 to 13507461 13 + TSS region transcription start site region 2500
Gm5608 8 13537678 to 13547028 9350 - lincRNA gene predicted gene 5608
Tssr80451 8 13548950 to 13548964 14 - TSS region transcription start site region 80451
Tssr80452 8 13548975 to 13548982 7 - TSS region transcription start site region 80452
Tssr80453 8 13548989 to 13548998 9 - TSS region transcription start site region 80453
Tssr80454 8 13550246 to 13550254 8 - TSS region transcription start site region 80454
1700029H14Rik 8 13550733 to 13562461 11728 - protein coding gene RIKEN cDNA 1700029H14 gene
Tssr80455 8 13562397 to 13562410 13 - TSS region transcription start site region 80455
Rasa3 8 13567218 to 13677587 110369 - protein coding gene RAS p21 protein activator 3
Tssr80456 8 13584015 to 13584016 1 - TSS region transcription start site region 80456
Tssr80457 8 13584029 to 13584052 23 - TSS region transcription start site region 80457
Tssr76414 8 13584141 to 13584149 8 + TSS region transcription start site region 76414
Tssr76415 8 13584167 to 13584170 3 + TSS region transcription start site region 76415
Gm34795 8 13590313 to 13591997 1684 + lncRNA gene predicted gene, 34795
Tssr80458 8 13594954 to 13594983 29 - TSS region transcription start site region 80458
Tssr76416 8 13595118 to 13595130 12 + TSS region transcription start site region 76416
Tssr2501 8 13600595 to 13600608 13 + TSS region transcription start site region 2501
Tssr76417 8 13600624 to 13600643 19 + TSS region transcription start site region 76417
D8Mit60 8 13650751 to 13650928 177 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 60
nr 8 13650928 to 4976602 -8674326 heritable phenotypic marker nervous
Cpgi20114 8 13670174 to 13670414 240 CpG island CpG island 20114
4930442M18Rik 8 13672925 to 13676868 3943 unclassified gene RIKEN cDNA 4930442M18 gene
Tssr76418 8 13674489 to 13674526 37 + TSS region transcription start site region 76418
Cpgi20115 8 13676308 to 13676493 185 CpG island CpG island 20115
Tssr80459 8 13676366 to 13676391 25 - TSS region transcription start site region 80459
Cpgi20116 8 13676796 to 13677950 1154 CpG island CpG island 20116
Tssr80460 8 13677512 to 13677519 7 - TSS region transcription start site region 80460
Tssr80461 8 13677536 to 13677553 17 - TSS region transcription start site region 80461
Tssr80462 8 13677575 to 13677592 17 - TSS region transcription start site region 80462
Tssr76419 8 13677775 to 13677827 52 + TSS region transcription start site region 76419
Gm46032 8 13682868 to 13785106 102238 - lncRNA gene predicted gene, 46032
Tssr80463 8 13686557 to 13686562 5 - TSS region transcription start site region 80463
Tssr76420 8 13686677 to 13686683 6 + TSS region transcription start site region 76420
Tssr76421 8 13686773 to 13686785 12 + TSS region transcription start site region 76421
Tssr76422 8 13705884 to 13705952 68 + TSS region transcription start site region 76422
Cfap97d2 8 13705889 to 13743414 37525 + protein coding gene CFAP97 domain containing 2
Gm7669 8 13745876 to 13747478 1602 - pseudogene predicted gene 7669
Cpgi20117 8 13757461 to 13758175 714 CpG island CpG island 20117
Tssr76423 8 13757663 to 13757714 51 + TSS region transcription start site region 76423
Cdc16 8 13757676 to 13781938 24262 + protein coding gene CDC16 cell division cycle 16
Tssr76424 8 13757716 to 13757723 7 + TSS region transcription start site region 76424
Tssr76425 8 13771366 to 13771389 23 + TSS region transcription start site region 76425
Tssr76426 8 13780791 to 13780801 10 + TSS region transcription start site region 76426
Cpgi20118 8 13785212 to 13786563 1351 CpG island CpG island 20118
Upf3a 8 13785233 to 13798538 13305 + protein coding gene UPF3 regulator of nonsense transcripts homolog A (yeast)
Tssr80464 8 13785482 to 13785502 20 - TSS region transcription start site region 80464
Tssr76427 8 13785620 to 13785661 41 + TSS region transcription start site region 76427
Tssr76428 8 13792137 to 13792160 23 + TSS region transcription start site region 76428
AF366264 8 13835229 to 13838089 2860 - protein coding gene cDNA sequence AF366264
Tssr80465 8 13838557 to 13838565 8 - TSS region transcription start site region 80465
Cpgi20119 8 13869569 to 13870387 818 CpG island CpG island 20119
Champ1 8 13869641 to 13881639 11998 + protein coding gene chromosome alignment maintaining phosphoprotein 1
Tssr76429 8 13869673 to 13869740 67 + TSS region transcription start site region 76429
Gm47277 8 13876091 to 13876184 93 + miRNA gene predicted gene, 47277
Gm24698 8 13876097 to 13876226 129 + snoRNA gene predicted gene, 24698
Coprs 8 13884794 to 13890281 5487 - protein coding gene coordinator of PRMT5, differentiation stimulator
Cpgi20120 8 13889636 to 13890673 1037 CpG island CpG island 20120
Tssr80466 8 13889984 to 13890000 16 - TSS region transcription start site region 80466
Tssr80467 8 13890233 to 13890300 67 - TSS region transcription start site region 80467
Tssr76430 8 13896282 to 13896287 5 + TSS region transcription start site region 76430
Gm7676 8 13896311 to 13896629 318 + pseudogene predicted gene 7676
Tssr76431 8 13896464 to 13896477 13 + TSS region transcription start site region 76431
Cpgi20121 8 13907280 to 13908239 959 CpG island CpG island 20121
Tssr76432 8 13907736 to 13907745 9 + TSS region transcription start site region 76432
Tssr76433 8 13907748 to 13907816 68 + TSS region transcription start site region 76433
Fbxo25 8 13907803 to 13940522 32719 + protein coding gene F-box protein 25
Tssr76434 8 13907827 to 13907837 10 + TSS region transcription start site region 76434