Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:128382859-129082878

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Phdlc2 8 124464422 to 129018580 4554158 QTL plasma HDL cholesterol 2
Nrp1 8 128358604 to 128503363 144759 + protein coding gene neuropilin 1
Tssr80161 8 128418117 to 128418125 8 + TSS region transcription start site region 80161
Tssr80162 8 128418762 to 128418782 20 + TSS region transcription start site region 80162
Tssr2744 8 128418811 to 128418836 25 + TSS region transcription start site region 2744
D030005H02Rik 8 128437703 to 128443615 5912 unclassified gene RIKEN cDNA D030005H02 gene
Tssr83544 8 128438329 to 128438333 4 - TSS region transcription start site region 83544
Gm32643 8 128453055 to 128491976 38921 - lncRNA gene predicted gene, 32643
Tssr83545 8 128466303 to 128466307 4 - TSS region transcription start site region 83545
Tssr80163 8 128479694 to 128479706 12 + TSS region transcription start site region 80163
Tssr80164 8 128487356 to 128487360 4 + TSS region transcription start site region 80164
Tssr83546 8 128488471 to 128488482 11 - TSS region transcription start site region 83546
Tssr83547 8 128488499 to 128488515 16 - TSS region transcription start site region 83547
Tssr83548 8 128488551 to 128488562 11 - TSS region transcription start site region 83548
Tssr83549 8 128488575 to 128488592 17 - TSS region transcription start site region 83549
Tssr80165 8 128493887 to 128493908 21 + TSS region transcription start site region 80165
Tssr80166 8 128503268 to 128503336 68 + TSS region transcription start site region 80166
Tssr80167 8 128504110 to 128504126 16 + TSS region transcription start site region 80167
Tssr80168 8 128504466 to 128504478 12 + TSS region transcription start site region 80168
Tssr80169 8 128504937 to 128504966 29 + TSS region transcription start site region 80169
Gm9204 8 128633936 to 128634882 946 + pseudogene predicted gene 9204
Gm26002 8 128650997 to 128651103 106 + snRNA gene predicted gene, 26002
Gm45746 8 128654313 to 128656759 2446 + unclassified gene predicted gene 45746
Cpgi21315 8 128654563 to 128654772 209 CpG island CpG island 21315
Tssr83550 8 128680637 to 128680681 44 - TSS region transcription start site region 83550
Gm46066 8 128684732 to 128686598 1866 - protein coding gene predicted gene, 46066
Cpgi21316 8 128685094 to 128686521 1427 CpG island CpG island 21316
Tssr80170 8 128685394 to 128685458 64 + TSS region transcription start site region 80170
Tssr80171 8 128685471 to 128685484 13 + TSS region transcription start site region 80171
Itgb1 8 128685654 to 128733200 47546 + protein coding gene integrin beta 1 (fibronectin receptor beta)
Tssr80172 8 128685746 to 128685782 36 + TSS region transcription start site region 80172
Tssr80173 8 128685786 to 128685818 32 + TSS region transcription start site region 80173
Tssr80174 8 128685849 to 128685856 7 + TSS region transcription start site region 80174
Tssr80175 8 128685874 to 128685911 37 + TSS region transcription start site region 80175
Tssr80176 8 128685912 to 128685923 11 + TSS region transcription start site region 80176
Tssr83551 8 128686321 to 128686339 18 - TSS region transcription start site region 83551
Tssr80177 8 128697996 to 128698000 4 + TSS region transcription start site region 80177
Tssr80178 8 128713237 to 128713266 29 + TSS region transcription start site region 80178
Tssr80179 8 128720438 to 128720453 15 + TSS region transcription start site region 80179
Tssr80180 8 128722373 to 128722424 51 + TSS region transcription start site region 80180
Tssr80181 8 128724284 to 128724307 23 + TSS region transcription start site region 80181
Tssr80182 8 128732822 to 128732846 24 + TSS region transcription start site region 80182
Tssr80183 8 128732859 to 128732878 19 + TSS region transcription start site region 80183
Tssr80184 8 128732925 to 128732937 12 + TSS region transcription start site region 80184
Gm3952 8 128745963 to 128798694 52731 - protein coding gene predicted gene 3952
Gm26100 8 128771170 to 128771296 126 + snoRNA gene predicted gene, 26100
D8Mit156 8 128895504 to 128895642 138 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 156
Tssr83552 8 128896627 to 128896661 34 - TSS region transcription start site region 83552
D8Jpk3 8 128969933 to 128970046 113 DNA segment DNA segment, Chr 8, Japan, Kominami 3
Ccdc7a 8 128980019 to 129065492 85473 - protein coding gene coiled-coil domain containing 7A
Gm22545 8 129017890 to 129018021 131 + snoRNA gene predicted gene, 22545
D8Mit56 8 129018419 to 129018580 161 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 56
Obsty2 8 129018580 to 95518613 -33499967 QTL obesity 2
Tssr2745 8 129067106 to 129067116 10 + TSS region transcription start site region 2745
Tssr2746 8 129067129 to 129067141 12 + TSS region transcription start site region 2746
Ccdc7b 8 129067134 to 129183732 116598 + protein coding gene coiled-coil domain containing 7B
Tssr2747 8 129067154 to 129067163 9 + TSS region transcription start site region 2747