Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:127064032-129654045

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132 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Phdlc2 8 124464422 to 129018580 4554158 QTL plasma HDL cholesterol 2
Cpgi21310 8 127063504 to 127065305 1801 CpG island CpG island 21310
Pard3 8 127063893 to 127612286 548393 + protein coding gene par-3 family cell polarity regulator
Tssr80127 8 127064022 to 127064086 64 + TSS region transcription start site region 80127
Tssr80128 8 127064089 to 127064105 16 + TSS region transcription start site region 80128
Tssr80129 8 127064107 to 127064108 1 + TSS region transcription start site region 80129
Tssr80130 8 127069095 to 127069115 20 + TSS region transcription start site region 80130
Tssr80131 8 127093571 to 127093574 3 + TSS region transcription start site region 80131
Tssr80132 8 127095676 to 127095680 4 + TSS region transcription start site region 80132
Tssr80133 8 127111516 to 127111518 2 + TSS region transcription start site region 80133
D8Mit245 8 127140147 to 127140247 100 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 245
Tssr80134 8 127171391 to 127171407 16 + TSS region transcription start site region 80134
Tssr80135 8 127179035 to 127179039 4 + TSS region transcription start site region 80135
3110037L02Rik 8 127194943 to 127196470 1527 unclassified gene RIKEN cDNA 3110037L02 gene
D8Mit326 8 127225696 to 127225818 122 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 326
Tssr80136 8 127234051 to 127234062 11 + TSS region transcription start site region 80136
Tssr80137 8 127234161 to 127234246 85 + TSS region transcription start site region 80137
D8Mit93 8 127242895 to 127243063 168 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 93
Tssr80138 8 127268980 to 127268984 4 + TSS region transcription start site region 80138
Cpgi21311 8 127296032 to 127296291 259 CpG island CpG island 21311
Tssr2741 8 127379106 to 127379114 8 + TSS region transcription start site region 2741
Gm9909 8 127434872 to 127454244 19372 - lncRNA gene predicted gene 9909
Tssr83540 8 127440139 to 127440140 1 - TSS region transcription start site region 83540
Tssr83541 8 127440268 to 127440285 17 - TSS region transcription start site region 83541
Tssr83542 8 127441175 to 127441187 12 - TSS region transcription start site region 83542
Tssr83543 8 127441191 to 127441227 36 - TSS region transcription start site region 83543
Tssr80139 8 127447669 to 127447678 9 + TSS region transcription start site region 80139
Tssr80140 8 127485202 to 127485207 5 + TSS region transcription start site region 80140
Tssr80141 8 127521196 to 127521201 5 + TSS region transcription start site region 80141
Tssr80142 8 127540715 to 127540718 3 + TSS region transcription start site region 80142
Tssr80143 8 127546180 to 127546185 5 + TSS region transcription start site region 80143
Gm6921 8 127561435 to 127561869 434 + pseudogene predicted pseudogene 6921
Tssr80144 8 127579692 to 127579710 18 + TSS region transcription start site region 80144
Gm22968 8 127597706 to 127597823 117 + rRNA gene predicted gene, 22968
Cpgi21312 8 127602930 to 127603295 365 CpG island CpG island 21312
Gm32478 8 127630400 to 127639705 9305 + lncRNA gene predicted gene, 32478
Gm32532 8 127677066 to 127690808 13742 - lncRNA gene predicted gene, 32532
Gmmq6 8 127755016 to 127755016 0 QTL gastrocnemius muscle mass QTL 6
Edlmmq7 8 127755016 to 127755016 0 QTL extensor digitorum longus muscle mass QTL 7
Gm32590 8 127801062 to 127805735 4673 - lncRNA gene predicted gene, 32590
Tssr2742 8 127844600 to 127844602 2 + TSS region transcription start site region 2742
Tssr80145 8 128148759 to 128148775 16 + TSS region transcription start site region 80145
Tssr80146 8 128148779 to 128148795 16 + TSS region transcription start site region 80146
Tssr80147 8 128166386 to 128166396 10 + TSS region transcription start site region 80147
Tssr80148 8 128166409 to 128166437 28 + TSS region transcription start site region 80148
Tssr80149 8 128166449 to 128166454 5 + TSS region transcription start site region 80149
A930035F09Rik 8 128204713 to 128357716 153003 - lncRNA gene RIKEN cDNA A930035F09 gene
D8Mit1004 8 128205704 to 128205921 217 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 1004
Mir21c 8 128278148 to 128278225 77 - miRNA gene microRNA 21c
Cpgi21313 8 128356963 to 128357644 681 CpG island CpG island 21313
Tssr80150 8 128357499 to 128357513 14 + TSS region transcription start site region 80150
Cpgi21314 8 128357898 to 128360110 2212 CpG island CpG island 21314
Tssr80151 8 128358567 to 128358581 14 + TSS region transcription start site region 80151
Tssr80152 8 128358584 to 128358666 82 + TSS region transcription start site region 80152
Nrp1 8 128358604 to 128503363 144759 + protein coding gene neuropilin 1
Tssr80153 8 128359032 to 128359045 13 + TSS region transcription start site region 80153
Tssr80154 8 128359065 to 128359085 20 + TSS region transcription start site region 80154
Tssr80155 8 128359089 to 128359102 13 + TSS region transcription start site region 80155
Tssr2743 8 128359169 to 128359181 12 + TSS region transcription start site region 2743
Mir1903 8 128359241 to 128359320 79 + miRNA gene microRNA 1903
Tssr80156 8 128359242 to 128359291 49 + TSS region transcription start site region 80156
Tssr80157 8 128359324 to 128359344 20 + TSS region transcription start site region 80157
Tssr80158 8 128359358 to 128359369 11 + TSS region transcription start site region 80158
Tssr80159 8 128359385 to 128359406 21 + TSS region transcription start site region 80159
Tssr80160 8 128375003 to 128375016 13 + TSS region transcription start site region 80160
Tssr80161 8 128418117 to 128418125 8 + TSS region transcription start site region 80161
Tssr80162 8 128418762 to 128418782 20 + TSS region transcription start site region 80162
Tssr2744 8 128418811 to 128418836 25 + TSS region transcription start site region 2744
D030005H02Rik 8 128437703 to 128443615 5912 unclassified gene RIKEN cDNA D030005H02 gene
Tssr83544 8 128438329 to 128438333 4 - TSS region transcription start site region 83544
Gm32643 8 128453055 to 128491976 38921 - lncRNA gene predicted gene, 32643
Tssr83545 8 128466303 to 128466307 4 - TSS region transcription start site region 83545
Tssr80163 8 128479694 to 128479706 12 + TSS region transcription start site region 80163
Tssr80164 8 128487356 to 128487360 4 + TSS region transcription start site region 80164
Tssr83546 8 128488471 to 128488482 11 - TSS region transcription start site region 83546
Tssr83547 8 128488499 to 128488515 16 - TSS region transcription start site region 83547
Tssr83548 8 128488551 to 128488562 11 - TSS region transcription start site region 83548
Tssr83549 8 128488575 to 128488592 17 - TSS region transcription start site region 83549
Tssr80165 8 128493887 to 128493908 21 + TSS region transcription start site region 80165
Tssr80166 8 128503268 to 128503336 68 + TSS region transcription start site region 80166
Tssr80167 8 128504110 to 128504126 16 + TSS region transcription start site region 80167
Tssr80168 8 128504466 to 128504478 12 + TSS region transcription start site region 80168
Tssr80169 8 128504937 to 128504966 29 + TSS region transcription start site region 80169
Gm9204 8 128633936 to 128634882 946 + pseudogene predicted gene 9204
Gm26002 8 128650997 to 128651103 106 + snRNA gene predicted gene, 26002
Gm45746 8 128654313 to 128656759 2446 + unclassified gene predicted gene 45746
Cpgi21315 8 128654563 to 128654772 209 CpG island CpG island 21315
Tssr83550 8 128680637 to 128680681 44 - TSS region transcription start site region 83550
Gm46066 8 128684732 to 128686598 1866 - protein coding gene predicted gene, 46066
Cpgi21316 8 128685094 to 128686521 1427 CpG island CpG island 21316
Tssr80170 8 128685394 to 128685458 64 + TSS region transcription start site region 80170
Tssr80171 8 128685471 to 128685484 13 + TSS region transcription start site region 80171
Itgb1 8 128685654 to 128733200 47546 + protein coding gene integrin beta 1 (fibronectin receptor beta)
Tssr80172 8 128685746 to 128685782 36 + TSS region transcription start site region 80172
Tssr80173 8 128685786 to 128685818 32 + TSS region transcription start site region 80173
Tssr80174 8 128685849 to 128685856 7 + TSS region transcription start site region 80174
Tssr80175 8 128685874 to 128685911 37 + TSS region transcription start site region 80175
Tssr80176 8 128685912 to 128685923 11 + TSS region transcription start site region 80176
Tssr83551 8 128686321 to 128686339 18 - TSS region transcription start site region 83551
Tssr80177 8 128697996 to 128698000 4 + TSS region transcription start site region 80177
Tssr80178 8 128713237 to 128713266 29 + TSS region transcription start site region 80178
Tssr80179 8 128720438 to 128720453 15 + TSS region transcription start site region 80179
Tssr80180 8 128722373 to 128722424 51 + TSS region transcription start site region 80180
Tssr80181 8 128724284 to 128724307 23 + TSS region transcription start site region 80181
Tssr80182 8 128732822 to 128732846 24 + TSS region transcription start site region 80182
Tssr80183 8 128732859 to 128732878 19 + TSS region transcription start site region 80183
Tssr80184 8 128732925 to 128732937 12 + TSS region transcription start site region 80184
Gm3952 8 128745963 to 128798694 52731 - protein coding gene predicted gene 3952
Gm26100 8 128771170 to 128771296 126 + snoRNA gene predicted gene, 26100
D8Mit156 8 128895504 to 128895642 138 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 156
Tssr83552 8 128896627 to 128896661 34 - TSS region transcription start site region 83552
D8Jpk3 8 128969933 to 128970046 113 DNA segment DNA segment, Chr 8, Japan, Kominami 3
Ccdc7a 8 128980019 to 129065492 85473 - protein coding gene coiled-coil domain containing 7A
Gm22545 8 129017890 to 129018021 131 + snoRNA gene predicted gene, 22545
D8Mit56 8 129018419 to 129018580 161 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 56
Obsty2 8 129018580 to 95518613 -33499967 QTL obesity 2
Tssr2745 8 129067106 to 129067116 10 + TSS region transcription start site region 2745
Tssr2746 8 129067129 to 129067141 12 + TSS region transcription start site region 2746
Ccdc7b 8 129067134 to 129183732 116598 + protein coding gene coiled-coil domain containing 7B
Tssr2747 8 129067154 to 129067163 9 + TSS region transcription start site region 2747
Gm22374 8 129113295 to 129113426 131 - snoRNA gene predicted gene, 22374
Gm10999 8 129129097 to 129131661 2564 - protein coding gene predicted gene 10999
2610044O15Rik8 8 129216354 to 129234046 17692 - protein coding gene RIKEN cDNA 2610044O15 gene
Tssr2748 8 129233992 to 129234030 38 - TSS region transcription start site region 2748
Tssr2749 8 129234033 to 129234055 22 - TSS region transcription start site region 2749
Tssr2750 8 129234362 to 129234377 15 - TSS region transcription start site region 2750
Tssr2751 8 129252919 to 129252935 16 + TSS region transcription start site region 2751
Tssr2752 8 129252950 to 129252973 23 + TSS region transcription start site region 2752
Gm21399 8 129252998 to 129253594 596 + pseudogene predicted gene, 21399
Tssr2753 8 129253221 to 129253245 24 + TSS region transcription start site region 2753
Tssr2754 8 129263596 to 129263631 35 + TSS region transcription start site region 2754
Gm32856 8 129263641 to 129282844 19203 + lincRNA gene predicted gene, 32856