Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:126452364-127422390

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147 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dntcs1 8 102716921 to 127055036 24338115 QTL dental caries susceptibility 1
Tarbp1 8 126425329 to 126475065 49736 - protein coding gene TAR RNA binding protein 1
Cpgi21301 8 126473909 to 126475292 1383 CpG island CpG island 21301
Tssr83480 8 126475062 to 126475097 35 - TSS region transcription start site region 83480
Gm6091 8 126476248 to 126476412 164 - pseudogene predicted pseudogene 6091
Cpgi21302 8 126476584 to 126476872 288 CpG island CpG island 21302
Cpgi21303 8 126500996 to 126501236 240 CpG island CpG island 21303
5031438A03Rik 8 126518515 to 126519547 1032 unclassified non-coding RNA gene RIKEN cDNA 5031438A03 gene
D8Mit52 8 126534123 to 126534350 227 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 52
Tssr83481 8 126537353 to 126537387 34 - TSS region transcription start site region 83481
D8Mit42 8 126552317 to 126552465 148 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 42
Tssr80099 8 126556687 to 126556691 4 + TSS region transcription start site region 80099
Tssr80100 8 126566279 to 126566318 39 + TSS region transcription start site region 80100
Gm26759 8 126566970 to 126590988 24018 + antisense lncRNA gene predicted gene, 26759
Gm39286 8 126567112 to 126571925 4813 - lncRNA gene predicted gene, 39286
Tssr2738 8 126574747 to 126574750 3 - TSS region transcription start site region 2738
Cpgi21304 8 126583786 to 126585012 1226 CpG island CpG island 21304
Tssr83482 8 126584581 to 126584585 4 - TSS region transcription start site region 83482
Tssr83483 8 126585687 to 126585714 27 - TSS region transcription start site region 83483
Irf2bp2 8 126588296 to 126593436 5140 - protein coding gene interferon regulatory factor 2 binding protein 2
Tssr83484 8 126588478 to 126588489 11 - TSS region transcription start site region 83484
Tssr83485 8 126588647 to 126588655 8 - TSS region transcription start site region 83485
Tssr83486 8 126588674 to 126588692 18 - TSS region transcription start site region 83486
Tssr83487 8 126589451 to 126589467 16 - TSS region transcription start site region 83487
Tssr83488 8 126589536 to 126589570 34 - TSS region transcription start site region 83488
Tssr83489 8 126589587 to 126589607 20 - TSS region transcription start site region 83489
Tssr83490 8 126589612 to 126589626 14 - TSS region transcription start site region 83490
Tssr83491 8 126589708 to 126589726 18 - TSS region transcription start site region 83491
Tssr83492 8 126589776 to 126589787 11 - TSS region transcription start site region 83492
Tssr83493 8 126589889 to 126589904 15 - TSS region transcription start site region 83493
Tssr80101 8 126589942 to 126589958 16 + TSS region transcription start site region 80101
Tssr83494 8 126590057 to 126590104 47 - TSS region transcription start site region 83494
Tssr83495 8 126590449 to 126590469 20 - TSS region transcription start site region 83495
Tssr83496 8 126590744 to 126590769 25 - TSS region transcription start site region 83496
Tssr83497 8 126590989 to 126591001 12 - TSS region transcription start site region 83497
Tssr83498 8 126591492 to 126591520 28 - TSS region transcription start site region 83498
Tssr83499 8 126591634 to 126591645 11 - TSS region transcription start site region 83499
Tssr83500 8 126591648 to 126591672 24 - TSS region transcription start site region 83500
Tssr83501 8 126591703 to 126591740 37 - TSS region transcription start site region 83501
Tssr83502 8 126591766 to 126591784 18 - TSS region transcription start site region 83502
Tssr83503 8 126591914 to 126591926 12 - TSS region transcription start site region 83503
Tssr83504 8 126591985 to 126592000 15 - TSS region transcription start site region 83504
Cpgi21305 8 126592000 to 126595136 3136 CpG island CpG island 21305
Tssr83505 8 126592051 to 126592075 24 - TSS region transcription start site region 83505
Tssr83506 8 126592085 to 126592107 22 - TSS region transcription start site region 83506
Tssr80102 8 126592179 to 126592202 23 + TSS region transcription start site region 80102
Tssr83507 8 126592235 to 126592261 26 - TSS region transcription start site region 83507
Tssr80103 8 126592437 to 126592452 15 + TSS region transcription start site region 80103
Tssr83508 8 126593918 to 126593929 11 - TSS region transcription start site region 83508
Tssr83509 8 126593946 to 126593971 25 - TSS region transcription start site region 83509
Tssr83510 8 126593972 to 126593997 25 - TSS region transcription start site region 83510
Tssr83511 8 126594003 to 126594014 11 - TSS region transcription start site region 83511
Gm31546 8 126594265 to 126596168 1903 - lncRNA gene predicted gene, 31546
Tssr83512 8 126594562 to 126594568 6 - TSS region transcription start site region 83512
Tssr80104 8 126594693 to 126594712 19 + TSS region transcription start site region 80104
Tssr80105 8 126594793 to 126594822 29 + TSS region transcription start site region 80105
Tssr80106 8 126594827 to 126594853 26 + TSS region transcription start site region 80106
Tssr80107 8 126594895 to 126594917 22 + TSS region transcription start site region 80107
Tssr83513 8 126595946 to 126595983 37 - TSS region transcription start site region 83513
Tssr80108 8 126596216 to 126596221 5 + TSS region transcription start site region 80108
D8Mit122 8 126597988 to 126598127 139 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 122
Tssr80109 8 126662927 to 126662965 38 + TSS region transcription start site region 80109
D8Mit92 8 126688333 to 126688492 159 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 92
Fcd1 8 126688333 to 126688492 159 QTL functional capillary density 1
Leci1 8 126688333 to 126688492 159 QTL leukocyte endothelial cell interactions 1
Gm31603 8 126727940 to 126729750 1810 - lncRNA gene predicted gene, 31603
Tssr80110 8 126736825 to 126736863 38 + TSS region transcription start site region 80110
Gm45805 8 126755571 to 126758334 2763 - lincRNA gene predicted gene 45805
Tssr80111 8 126758177 to 126758190 13 + TSS region transcription start site region 80111
Tssr83514 8 126804167 to 126804175 8 - TSS region transcription start site region 83514
Tssr2739 8 126807464 to 126807470 6 - TSS region transcription start site region 2739
Gm31718 8 126812640 to 126908215 95575 - lincRNA gene predicted gene, 31718
Tssr83515 8 126817095 to 126817099 4 - TSS region transcription start site region 83515
Tssr80112 8 126828379 to 126828381 2 + TSS region transcription start site region 80112
Tssr83516 8 126837298 to 126837304 6 - TSS region transcription start site region 83516
Tssr83517 8 126839426 to 126839440 14 - TSS region transcription start site region 83517
Tssr83518 8 126844905 to 126844916 11 - TSS region transcription start site region 83518
Tssr83519 8 126847778 to 126847794 16 - TSS region transcription start site region 83519
A630001O12Rik 8 126848899 to 126852254 3355 + lincRNA gene RIKEN cDNA A630001O12 gene
Tssr80113 8 126848928 to 126848946 18 + TSS region transcription start site region 80113
Tssr80114 8 126848986 to 126849002 16 + TSS region transcription start site region 80114
Tssr80115 8 126849016 to 126849030 14 + TSS region transcription start site region 80115
Tssr83520 8 126849950 to 126849980 30 - TSS region transcription start site region 83520
Tssr83521 8 126849987 to 126850009 22 - TSS region transcription start site region 83521
Tssr83522 8 126852178 to 126852181 3 - TSS region transcription start site region 83522
Tssr83523 8 126852702 to 126852740 38 - TSS region transcription start site region 83523
Tssr80116 8 126854673 to 126854677 4 + TSS region transcription start site region 80116
Tssr80117 8 126855246 to 126855272 26 + TSS region transcription start site region 80117
Tssr83524 8 126855889 to 126855917 28 - TSS region transcription start site region 83524
Tssr80118 8 126868043 to 126868060 17 + TSS region transcription start site region 80118
Tssr80119 8 126868062 to 126868069 7 + TSS region transcription start site region 80119
Tssr80120 8 126869621 to 126869644 23 + TSS region transcription start site region 80120
Tssr83525 8 126872666 to 126872715 49 - TSS region transcription start site region 83525
Tssr83526 8 126881821 to 126881843 22 - TSS region transcription start site region 83526
Tssr83527 8 126885656 to 126885672 16 - TSS region transcription start site region 83527
Tssr83528 8 126895237 to 126895246 9 - TSS region transcription start site region 83528
Tssr80121 8 126904143 to 126904161 18 + TSS region transcription start site region 80121
Tssr83529 8 126908185 to 126908196 11 - TSS region transcription start site region 83529
Tssr83530 8 126908231 to 126908244 13 - TSS region transcription start site region 83530
Tssr80122 8 126909045 to 126909073 28 + TSS region transcription start site region 80122
Tomm20 8 126930667 to 126945844 15177 - protein coding gene translocase of outer mitochondrial membrane 20
Tssr83531 8 126937350 to 126937358 8 - TSS region transcription start site region 83531
Tssr83532 8 126937364 to 126937390 26 - TSS region transcription start site region 83532
Gm26397 8 126944847 to 126944980 133 - snoRNA gene predicted gene, 26397
Tssr83533 8 126944976 to 126944978 2 - TSS region transcription start site region 83533
Cpgi21306 8 126944991 to 126946242 1251 CpG island CpG island 21306
Tssr83534 8 126945841 to 126945862 21 - TSS region transcription start site region 83534
0610042B23Rik 8 126946086 to 126946476 390 unclassified gene RIKEN cDNA 0610042B23 gene
Rbm34 8 126947172 to 126971071 23899 - protein coding gene RNA binding motif protein 34
Cpgi21307 8 126970604 to 126971403 799 CpG island CpG island 21307
Tssr83535 8 126971042 to 126971056 14 - TSS region transcription start site region 83535
Tssr83536 8 126971062 to 126971076 14 - TSS region transcription start site region 83536
Tssr83537 8 126971092 to 126971099 7 - TSS region transcription start site region 83537
Tssr80123 8 126971178 to 126971223 45 + TSS region transcription start site region 80123
Tssr80124 8 126971233 to 126971240 7 + TSS region transcription start site region 80124
Gm29688 8 126978041 to 126979494 1453 - unclassified gene predicted gene, 29688
Cpgi21308 8 126979073 to 126979446 373 CpG island CpG island 21308
Tssr83538 8 126979458 to 126979471 13 - TSS region transcription start site region 83538
Tssr83539 8 126979511 to 126979519 8 - TSS region transcription start site region 83539
Gm38574 8 126981593 to 126982232 639 - pseudogene predicted gene, 38574
Cpgi21309 8 126988103 to 126988327 224 CpG island CpG island 21309
Gm5358 8 127040348 to 127040700 352 - pseudogene predicted gene 5358
Gm22730 8 127046912 to 127047082 170 + snRNA gene predicted gene, 22730
D8Mit280 8 127054931 to 127055036 105 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 280
Cpgi21310 8 127063504 to 127065305 1801 CpG island CpG island 21310
Tssr80125 8 127063641 to 127063697 56 + TSS region transcription start site region 80125
Pard3 8 127063893 to 127612286 548393 + protein coding gene par-3 family cell polarity regulator
Tssr80126 8 127063897 to 127063916 19 + TSS region transcription start site region 80126
Tssr2740 8 127063992 to 127064006 14 + TSS region transcription start site region 2740
Tssr80127 8 127064022 to 127064086 64 + TSS region transcription start site region 80127
Tssr80128 8 127064089 to 127064105 16 + TSS region transcription start site region 80128
Tssr80129 8 127064107 to 127064108 1 + TSS region transcription start site region 80129
Tssr80130 8 127069095 to 127069115 20 + TSS region transcription start site region 80130
Tssr80131 8 127093571 to 127093574 3 + TSS region transcription start site region 80131
Tssr80132 8 127095676 to 127095680 4 + TSS region transcription start site region 80132
Tssr80133 8 127111516 to 127111518 2 + TSS region transcription start site region 80133
D8Mit245 8 127140147 to 127140247 100 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 245
Tssr80134 8 127171391 to 127171407 16 + TSS region transcription start site region 80134
Tssr80135 8 127179035 to 127179039 4 + TSS region transcription start site region 80135
3110037L02Rik 8 127194943 to 127196470 1527 unclassified gene RIKEN cDNA 3110037L02 gene
D8Mit326 8 127225696 to 127225818 122 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 326
Tssr80136 8 127234051 to 127234062 11 + TSS region transcription start site region 80136
Tssr80137 8 127234161 to 127234246 85 + TSS region transcription start site region 80137
D8Mit93 8 127242895 to 127243063 168 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 93
Tssr80138 8 127268980 to 127268984 4 + TSS region transcription start site region 80138
Cpgi21311 8 127296032 to 127296291 259 CpG island CpG island 21311
Tssr2741 8 127379106 to 127379114 8 + TSS region transcription start site region 2741