Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:12597030-12917065

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spaca7 8 12573029 to 12600744 27715 + protein coding gene sperm acrosome associated 7
Tubgcp3 8 12614277 to 12672243 57966 - protein coding gene tubulin, gamma complex associated protein 3
Tssr2492 8 12647192 to 12647194 2 + TSS region transcription start site region 2492
Gm26483 8 12666095 to 12666198 103 + miRNA gene predicted gene, 26483
Cpgi20103 8 12671591 to 12672735 1144 CpG island CpG island 20103
Tssr80408 8 12672099 to 12672132 33 - TSS region transcription start site region 80408
Tssr80409 8 12672135 to 12672146 11 - TSS region transcription start site region 80409
4931415C17Rik 8 12672391 to 12679238 6847 + lncRNA gene RIKEN cDNA 4931415C17 gene
Tssr2493 8 12672426 to 12672457 31 + TSS region transcription start site region 2493
2810487C13Rik 8 12674307 to 12675247 940 unclassified gene RIKEN cDNA 2810487C13 gene
Gm15348 8 12706944 to 12719127 12183 - lincRNA gene predicted gene 15348
Gm39133 8 12749201 to 12751308 2107 + lncRNA gene predicted gene, 39133
Gm33587 8 12753823 to 12756988 3165 - lncRNA gene predicted gene, 33587
Cpgi20104 8 12756462 to 12757942 1480 CpG island CpG island 20104
Tssr2494 8 12756790 to 12756833 43 - TSS region transcription start site region 2494
Tssr76289 8 12757002 to 12757027 25 + TSS region transcription start site region 76289
Atp11a 8 12757016 to 12868728 111712 + protein coding gene ATPase, class VI, type 11A
Tssr76290 8 12757030 to 12757065 35 + TSS region transcription start site region 76290
Tssr76291 8 12757078 to 12757089 11 + TSS region transcription start site region 76291
Tssr76292 8 12762645 to 12762657 12 + TSS region transcription start site region 76292
Tssr80410 8 12779619 to 12779623 4 - TSS region transcription start site region 80410
Tssr76293 8 12826193 to 12826215 22 + TSS region transcription start site region 76293
Gm15350 8 12828338 to 12831919 3581 - antisense lncRNA gene predicted gene 15350
Tssr80411 8 12831909 to 12831927 18 - TSS region transcription start site region 80411
Tssr76294 8 12842843 to 12842886 43 + TSS region transcription start site region 76294
Gm15347 8 12860358 to 12877344 16986 - antisense lncRNA gene predicted gene 15347
Tssr76295 8 12866646 to 12866661 15 + TSS region transcription start site region 76295
Tssr76296 8 12867112 to 12867116 4 + TSS region transcription start site region 76296
Gm33637 8 12872344 to 12873542 1198 - lncRNA gene predicted gene, 33637
Mcf2l 8 12873544 to 13020509 146965 + protein coding gene mcf.2 transforming sequence-like
Cpgi20105 8 12873784 to 12874279 495 CpG island CpG island 20105
Tssr76297 8 12873793 to 12873826 33 + TSS region transcription start site region 76297
Tssr76298 8 12873902 to 12873929 27 + TSS region transcription start site region 76298
Gm15353 8 12879878 to 12883726 3848 - antisense lncRNA gene predicted gene 15353
Gm15351 8 12912713 to 12915427 2714 - antisense lncRNA gene predicted gene 15351
Cpgi20106 8 12915236 to 12915942 706 CpG island CpG island 20106
Tssr76299 8 12915677 to 12915690 13 + TSS region transcription start site region 76299
Tssr80412 8 12915733 to 12915778 45 - TSS region transcription start site region 80412
Tssr76300 8 12915879 to 12915966 87 + TSS region transcription start site region 76300