Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:12587372-13487390

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233 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spaca7 8 12573029 to 12600744 27715 + protein coding gene sperm acrosome associated 7
Tssr76288 8 12589197 to 12589201 4 + TSS region transcription start site region 76288
Tubgcp3 8 12614277 to 12672243 57966 - protein coding gene tubulin, gamma complex associated protein 3
Tssr2492 8 12647192 to 12647194 2 + TSS region transcription start site region 2492
Gm26483 8 12666095 to 12666198 103 + miRNA gene predicted gene, 26483
Cpgi20103 8 12671591 to 12672735 1144 CpG island CpG island 20103
Tssr80408 8 12672099 to 12672132 33 - TSS region transcription start site region 80408
Tssr80409 8 12672135 to 12672146 11 - TSS region transcription start site region 80409
4931415C17Rik 8 12672391 to 12679238 6847 + lncRNA gene RIKEN cDNA 4931415C17 gene
Tssr2493 8 12672426 to 12672457 31 + TSS region transcription start site region 2493
2810487C13Rik 8 12674307 to 12675247 940 unclassified gene RIKEN cDNA 2810487C13 gene
Gm15348 8 12706944 to 12719127 12183 - lincRNA gene predicted gene 15348
Gm39133 8 12749201 to 12751308 2107 + lncRNA gene predicted gene, 39133
Gm33587 8 12753823 to 12756988 3165 - lncRNA gene predicted gene, 33587
Cpgi20104 8 12756462 to 12757942 1480 CpG island CpG island 20104
Tssr2494 8 12756790 to 12756833 43 - TSS region transcription start site region 2494
Tssr76289 8 12757002 to 12757027 25 + TSS region transcription start site region 76289
Atp11a 8 12757016 to 12868728 111712 + protein coding gene ATPase, class VI, type 11A
Tssr76290 8 12757030 to 12757065 35 + TSS region transcription start site region 76290
Tssr76291 8 12757078 to 12757089 11 + TSS region transcription start site region 76291
Tssr76292 8 12762645 to 12762657 12 + TSS region transcription start site region 76292
Tssr80410 8 12779619 to 12779623 4 - TSS region transcription start site region 80410
Tssr76293 8 12826193 to 12826215 22 + TSS region transcription start site region 76293
Gm15350 8 12828338 to 12831919 3581 - antisense lncRNA gene predicted gene 15350
Tssr80411 8 12831909 to 12831927 18 - TSS region transcription start site region 80411
Tssr76294 8 12842843 to 12842886 43 + TSS region transcription start site region 76294
Gm15347 8 12860358 to 12877344 16986 - antisense lncRNA gene predicted gene 15347
Tssr76295 8 12866646 to 12866661 15 + TSS region transcription start site region 76295
Tssr76296 8 12867112 to 12867116 4 + TSS region transcription start site region 76296
Gm33637 8 12872344 to 12873542 1198 - lncRNA gene predicted gene, 33637
Mcf2l 8 12873544 to 13020509 146965 + protein coding gene mcf.2 transforming sequence-like
Cpgi20105 8 12873784 to 12874279 495 CpG island CpG island 20105
Tssr76297 8 12873793 to 12873826 33 + TSS region transcription start site region 76297
Tssr76298 8 12873902 to 12873929 27 + TSS region transcription start site region 76298
Gm15353 8 12879878 to 12883726 3848 - antisense lncRNA gene predicted gene 15353
Gm15351 8 12912713 to 12915427 2714 - antisense lncRNA gene predicted gene 15351
Cpgi20106 8 12915236 to 12915942 706 CpG island CpG island 20106
Tssr76299 8 12915677 to 12915690 13 + TSS region transcription start site region 76299
Tssr80412 8 12915733 to 12915778 45 - TSS region transcription start site region 80412
Tssr76300 8 12915879 to 12915966 87 + TSS region transcription start site region 76300
Tssr76301 8 12926192 to 12926201 9 + TSS region transcription start site region 76301
Tssr76302 8 12926204 to 12926218 14 + TSS region transcription start site region 76302
Tssr76303 8 12926268 to 12926291 23 + TSS region transcription start site region 76303
Tssr76304 8 12926299 to 12926317 18 + TSS region transcription start site region 76304
Tssr76305 8 12931672 to 12931711 39 + TSS region transcription start site region 76305
Tssr76306 8 12931718 to 12931750 32 + TSS region transcription start site region 76306
Tssr76307 8 12940928 to 12940945 17 + TSS region transcription start site region 76307
Cpgi20107 8 12947828 to 12948105 277 CpG island CpG island 20107
Tssr76308 8 12947865 to 12947931 66 + TSS region transcription start site region 76308
Tssr76309 8 12947935 to 12947962 27 + TSS region transcription start site region 76309
Gm38671 8 12947941 to 12948070 129 + miRNA gene predicted gene, 38671
Tssr76310 8 12947965 to 12947976 11 + TSS region transcription start site region 76310
Tssr76311 8 12947981 to 12948010 29 + TSS region transcription start site region 76311
Tssr76312 8 12949372 to 12949383 11 + TSS region transcription start site region 76312
Tssr76313 8 12949416 to 12949428 12 + TSS region transcription start site region 76313
Tssr76314 8 12949430 to 12949469 39 + TSS region transcription start site region 76314
Tssr76315 8 12949480 to 12949491 11 + TSS region transcription start site region 76315
Tssr76316 8 12949494 to 12949510 16 + TSS region transcription start site region 76316
Tssr76317 8 12949512 to 12949533 21 + TSS region transcription start site region 76317
Tssr76318 8 12951231 to 12951246 15 + TSS region transcription start site region 76318
Gm15349 8 12971826 to 12972029 203 - pseudogene predicted gene 15349
Tssr76319 8 12984246 to 12984330 84 + TSS region transcription start site region 76319
Tssr76320 8 12984370 to 12984379 9 + TSS region transcription start site region 76320
Tssr76321 8 12997161 to 12997184 23 + TSS region transcription start site region 76321
Tssr76322 8 13012412 to 13012413 1 + TSS region transcription start site region 76322
Gm15352 8 13021941 to 13022210 269 + pseudogene predicted gene 15352
Tssr76323 8 13026024 to 13026056 32 + TSS region transcription start site region 76323
F7 8 13026034 to 13035809 9775 + protein coding gene coagulation factor VII
Tssr80413 8 13027701 to 13027735 34 - TSS region transcription start site region 80413
Tssr76324 8 13031929 to 13031950 21 + TSS region transcription start site region 76324
Tssr76325 8 13037292 to 13037303 11 + TSS region transcription start site region 76325
F10 8 13037308 to 13056676 19368 + protein coding gene coagulation factor X
Tssr76326 8 13037339 to 13037352 13 + TSS region transcription start site region 76326
Tssr76327 8 13037357 to 13037362 5 + TSS region transcription start site region 76327
Tssr76328 8 13037372 to 13037390 18 + TSS region transcription start site region 76328
Tssr76329 8 13037802 to 13037838 36 + TSS region transcription start site region 76329
Tssr76330 8 13037976 to 13037985 9 + TSS region transcription start site region 76330
Tssr76331 8 13039303 to 13039304 1 + TSS region transcription start site region 76331
Tssr76332 8 13039326 to 13039335 9 + TSS region transcription start site region 76332
Tssr76333 8 13039358 to 13039359 1 + TSS region transcription start site region 76333
Tssr76334 8 13039369 to 13039397 28 + TSS region transcription start site region 76334
Tssr76335 8 13039537 to 13039549 12 + TSS region transcription start site region 76335
Tssr76336 8 13042757 to 13042769 12 + TSS region transcription start site region 76336
Tssr76337 8 13042777 to 13042790 13 + TSS region transcription start site region 76337
Tssr76338 8 13052285 to 13052289 4 + TSS region transcription start site region 76338
Tssr76339 8 13055674 to 13055681 7 + TSS region transcription start site region 76339
Tssr76340 8 13055832 to 13055843 11 + TSS region transcription start site region 76340
Tssr2495 8 13055848 to 13055853 5 + TSS region transcription start site region 2495
Tssr76341 8 13055954 to 13055966 12 + TSS region transcription start site region 76341
Tssr76342 8 13055977 to 13055988 11 + TSS region transcription start site region 76342
Tssr76343 8 13056027 to 13056036 9 + TSS region transcription start site region 76343
Tssr76344 8 13056148 to 13056156 8 + TSS region transcription start site region 76344
Tssr76345 8 13056157 to 13056175 18 + TSS region transcription start site region 76345
Tssr76346 8 13060575 to 13060587 12 + TSS region transcription start site region 76346
Proz 8 13060581 to 13075006 14425 + protein coding gene protein Z, vitamin K-dependent plasma glycoprotein
Tssr76347 8 13060591 to 13060620 29 + TSS region transcription start site region 76347
Tssr76348 8 13060909 to 13060918 9 + TSS region transcription start site region 76348
Tssr76349 8 13060921 to 13060960 39 + TSS region transcription start site region 76349
Tssr76350 8 13060982 to 13061027 45 + TSS region transcription start site region 76350
Tssr76351 8 13068691 to 13068697 6 + TSS region transcription start site region 76351
Gm33691 8 13068774 to 13071080 2306 + protein coding gene predicted gene, 33691
Tssr76352 8 13073960 to 13073972 12 + TSS region transcription start site region 76352
Tssr76353 8 13074161 to 13074164 3 + TSS region transcription start site region 76353
Tssr76354 8 13074243 to 13074263 20 + TSS region transcription start site region 76354
Gm17023 8 13076065 to 13078954 2889 + antisense lncRNA gene predicted gene 17023
Pcid2 8 13077189 to 13105459 28270 - protein coding gene PCI domain containing 2
Tssr76355 8 13086448 to 13086456 8 + TSS region transcription start site region 76355
Gm17022 8 13086509 to 13087430 921 + pseudogene predicted gene 17022
Tssr80414 8 13090131 to 13090135 4 - TSS region transcription start site region 80414
Cpgi20108 8 13104321 to 13106717 2396 CpG island CpG island 20108
Tssr80415 8 13104815 to 13104839 24 - TSS region transcription start site region 80415
Tssr80416 8 13104959 to 13104990 31 - TSS region transcription start site region 80416
Tssr80417 8 13105353 to 13105376 23 - TSS region transcription start site region 80417
Tssr80418 8 13105431 to 13105484 53 - TSS region transcription start site region 80418
Tssr80419 8 13105485 to 13105508 23 - TSS region transcription start site region 80419
Tssr76356 8 13105618 to 13105627 9 + TSS region transcription start site region 76356
Cul4a 8 13105621 to 13147940 42319 + protein coding gene cullin 4A
Tssr76357 8 13105647 to 13105676 29 + TSS region transcription start site region 76357
Tssr76358 8 13105715 to 13105764 49 + TSS region transcription start site region 76358
Tssr76359 8 13105777 to 13105788 11 + TSS region transcription start site region 76359
4933411D12Rik 8 13120354 to 13121330 976 unclassified gene RIKEN cDNA 4933411D12 gene
Mir7065 8 13136072 to 13136132 60 + miRNA gene microRNA 7065
Tssr2496 8 13138661 to 13138668 7 + TSS region transcription start site region 2496
Tssr76360 8 13140062 to 13140081 19 + TSS region transcription start site region 76360
Tssr76361 8 13140128 to 13140149 21 + TSS region transcription start site region 76361
Cpgi20109 8 13158676 to 13160051 1375 CpG island CpG island 20109
Tssr76362 8 13159141 to 13159168 27 + TSS region transcription start site region 76362
Lamp1 8 13159161 to 13175338 16177 + protein coding gene lysosomal-associated membrane protein 1
Tssr76363 8 13159208 to 13159215 7 + TSS region transcription start site region 76363
Tssr76364 8 13159228 to 13159314 86 + TSS region transcription start site region 76364
Tssr76365 8 13159355 to 13159362 7 + TSS region transcription start site region 76365
Tssr76366 8 13159576 to 13159589 13 + TSS region transcription start site region 76366
Tssr76367 8 13165843 to 13165858 15 + TSS region transcription start site region 76367
Tssr76368 8 13165860 to 13165872 12 + TSS region transcription start site region 76368
Tssr76369 8 13165892 to 13165907 15 + TSS region transcription start site region 76369
Tssr76370 8 13165910 to 13165929 19 + TSS region transcription start site region 76370
Tssr76371 8 13165933 to 13165940 7 + TSS region transcription start site region 76371
Tssr76372 8 13167125 to 13167177 52 + TSS region transcription start site region 76372
Tssr76373 8 13167200 to 13167249 49 + TSS region transcription start site region 76373
Tssr76374 8 13167254 to 13167309 55 + TSS region transcription start site region 76374
Tssr76375 8 13167325 to 13167335 10 + TSS region transcription start site region 76375
Tssr76376 8 13167820 to 13167874 54 + TSS region transcription start site region 76376
Tssr80420 8 13167843 to 13167869 26 - TSS region transcription start site region 80420
Tssr76377 8 13167880 to 13167893 13 + TSS region transcription start site region 76377
Tssr80421 8 13167887 to 13167916 29 - TSS region transcription start site region 80421
Tssr76378 8 13167899 to 13167927 28 + TSS region transcription start site region 76378
Tssr76379 8 13171199 to 13171212 13 + TSS region transcription start site region 76379
Tssr76380 8 13171220 to 13171267 47 + TSS region transcription start site region 76380
Tssr80422 8 13171228 to 13171250 22 - TSS region transcription start site region 80422
Tssr80423 8 13171254 to 13171291 37 - TSS region transcription start site region 80423
Tssr76381 8 13171332 to 13171341 9 + TSS region transcription start site region 76381
Tssr76382 8 13172583 to 13172599 16 + TSS region transcription start site region 76382
Tssr76383 8 13173619 to 13173669 50 + TSS region transcription start site region 76383
Tssr76384 8 13173869 to 13173895 26 + TSS region transcription start site region 76384
Tssr76385 8 13174582 to 13174606 24 + TSS region transcription start site region 76385
Tssr80424 8 13175327 to 13175337 10 - TSS region transcription start site region 80424
Grtp1 8 13176869 to 13200652 23783 - protein coding gene GH regulated TBC protein 1
Mir1968 8 13189031 to 13189098 67 - miRNA gene microRNA 1968
Tssr80425 8 13192288 to 13192336 48 - TSS region transcription start site region 80425
Tssr2497 8 13192354 to 13192359 5 - TSS region transcription start site region 2497
Tssr80426 8 13192362 to 13192366 4 - TSS region transcription start site region 80426
Tssr80427 8 13198142 to 13198145 3 - TSS region transcription start site region 80427
Cpgi20110 8 13199754 to 13201434 1680 CpG island CpG island 20110
Tssr80428 8 13200576 to 13200636 60 - TSS region transcription start site region 80428
Tssr76386 8 13200776 to 13200787 11 + TSS region transcription start site region 76386
Tssr76387 8 13200946 to 13200971 25 + TSS region transcription start site region 76387
Gm34505 8 13201168 to 13214598 13430 - lncRNA gene predicted gene, 34505
2810030D12Rik 8 13201171 to 13201793 622 + bidirectional promoter lncRNA gene RIKEN cDNA 2810030D12 gene
Tssr80429 8 13201413 to 13201428 15 - TSS region transcription start site region 80429
Adprhl1 8 13221663 to 13254162 32499 - protein coding gene ADP-ribosylhydrolase like 1
Tssr80430 8 13254032 to 13254043 11 - TSS region transcription start site region 80430
Tssr80431 8 13254068 to 13254085 17 - TSS region transcription start site region 80431
Tssr80432 8 13254104 to 13254119 15 - TSS region transcription start site region 80432
Tssr80433 8 13254121 to 13254150 29 - TSS region transcription start site region 80433
Tssr80434 8 13254154 to 13254168 14 - TSS region transcription start site region 80434
Tssr80435 8 13254176 to 13254188 12 - TSS region transcription start site region 80435
Tssr80436 8 13254246 to 13254269 23 - TSS region transcription start site region 80436
Dcun1d2 8 13255963 to 13288126 32163 - protein coding gene DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)
E330037G11Rik 8 13264102 to 13265187 1085 - unclassified gene RIKEN cDNA E330037G11 gene
Gm25014 8 13283115 to 13283217 102 - snRNA gene predicted gene, 25014
9530085L11Rik 8 13285352 to 13287466 2114 - unclassified gene RIKEN cDNA 9530085L11 gene
Cpgi20111 8 13287078 to 13288513 1435 CpG island CpG island 20111
Tssr80437 8 13287814 to 13287856 42 - TSS region transcription start site region 80437
Tssr76388 8 13287887 to 13287929 42 + TSS region transcription start site region 76388
Tssr76389 8 13288173 to 13288220 47 + TSS region transcription start site region 76389
Tmco3 8 13288190 to 13322924 34734 + protein coding gene transmembrane and coiled-coil domains 3
Tssr76390 8 13288237 to 13288263 26 + TSS region transcription start site region 76390
Tssr76391 8 13288283 to 13288290 7 + TSS region transcription start site region 76391
Tssr76392 8 13292689 to 13292727 38 + TSS region transcription start site region 76392
Tssr80438 8 13306660 to 13306661 1 - TSS region transcription start site region 80438
Cpgi20112 8 13337933 to 13339763 1830 CpG island CpG island 20112
Tssr76393 8 13338745 to 13338756 11 + TSS region transcription start site region 76393
Tfdp1 8 13338751 to 13378448 39697 + protein coding gene transcription factor Dp 1
Tssr76394 8 13338760 to 13338817 57 + TSS region transcription start site region 76394
Tssr76395 8 13339656 to 13339661 5 + TSS region transcription start site region 76395
Tssr80439 8 13351007 to 13351011 4 - TSS region transcription start site region 80439
Tssr76396 8 13351651 to 13351657 6 + TSS region transcription start site region 76396
Tssr76397 8 13351743 to 13351770 27 + TSS region transcription start site region 76397
Tssr76398 8 13354436 to 13354448 12 + TSS region transcription start site region 76398
Atp4b 8 13386209 to 13396778 10569 - protein coding gene ATPase, H+/K+ exchanging, beta polypeptide