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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:12527002-12987027

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D8Ertd67e 8 12538948 to 12539197 249 DNA segment DNA segment, Chr 8, ERATO Doi 67, expressed
D630011A20Rik 8 12554272 to 12573320 19048 - bidirectional promoter lncRNA gene RIKEN cDNA D630011A20 gene
Cpgi20102 8 12563044 to 12563292 248 CpG island CpG island 20102
D8Mit141 8 12566166 to 12566402 236 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 141
Tssr76285 8 12572820 to 12572831 11 + TSS region transcription start site region 76285
Tssr76286 8 12573017 to 12573060 43 + TSS region transcription start site region 76286
Spaca7 8 12573029 to 12600744 27715 + protein coding gene sperm acrosome associated 7
Tssr76287 8 12573064 to 12573076 12 + TSS region transcription start site region 76287
Tssr80405 8 12573205 to 12573262 57 - TSS region transcription start site region 80405
Tssr80406 8 12573279 to 12573290 11 - TSS region transcription start site region 80406
Tssr80407 8 12573311 to 12573336 25 - TSS region transcription start site region 80407
Tssr76288 8 12589197 to 12589201 4 + TSS region transcription start site region 76288
Tubgcp3 8 12614277 to 12672243 57966 - protein coding gene tubulin, gamma complex associated protein 3
Tssr2492 8 12647192 to 12647194 2 + TSS region transcription start site region 2492
Gm26483 8 12666095 to 12666198 103 + miRNA gene predicted gene, 26483
Cpgi20103 8 12671591 to 12672735 1144 CpG island CpG island 20103
Tssr80408 8 12672099 to 12672132 33 - TSS region transcription start site region 80408
Tssr80409 8 12672135 to 12672146 11 - TSS region transcription start site region 80409
4931415C17Rik 8 12672391 to 12679238 6847 + lncRNA gene RIKEN cDNA 4931415C17 gene
Tssr2493 8 12672426 to 12672457 31 + TSS region transcription start site region 2493
2810487C13Rik 8 12674307 to 12675247 940 unclassified gene RIKEN cDNA 2810487C13 gene
Gm15348 8 12706944 to 12719127 12183 - lincRNA gene predicted gene 15348
Gm39133 8 12749201 to 12751308 2107 + lncRNA gene predicted gene, 39133
Gm33587 8 12753823 to 12756988 3165 - lncRNA gene predicted gene, 33587
Cpgi20104 8 12756462 to 12757942 1480 CpG island CpG island 20104
Tssr2494 8 12756790 to 12756833 43 - TSS region transcription start site region 2494
Tssr76289 8 12757002 to 12757027 25 + TSS region transcription start site region 76289
Atp11a 8 12757016 to 12868728 111712 + protein coding gene ATPase, class VI, type 11A
Tssr76290 8 12757030 to 12757065 35 + TSS region transcription start site region 76290
Tssr76291 8 12757078 to 12757089 11 + TSS region transcription start site region 76291
Tssr76292 8 12762645 to 12762657 12 + TSS region transcription start site region 76292
Tssr80410 8 12779619 to 12779623 4 - TSS region transcription start site region 80410
Tssr76293 8 12826193 to 12826215 22 + TSS region transcription start site region 76293
Gm15350 8 12828338 to 12831919 3581 - antisense lncRNA gene predicted gene 15350
Tssr80411 8 12831909 to 12831927 18 - TSS region transcription start site region 80411
Tssr76294 8 12842843 to 12842886 43 + TSS region transcription start site region 76294
Gm15347 8 12860358 to 12877344 16986 - antisense lncRNA gene predicted gene 15347
Tssr76295 8 12866646 to 12866661 15 + TSS region transcription start site region 76295
Tssr76296 8 12867112 to 12867116 4 + TSS region transcription start site region 76296
Gm33637 8 12872344 to 12873542 1198 - lncRNA gene predicted gene, 33637
Mcf2l 8 12873544 to 13020509 146965 + protein coding gene mcf.2 transforming sequence-like
Cpgi20105 8 12873784 to 12874279 495 CpG island CpG island 20105
Tssr76297 8 12873793 to 12873826 33 + TSS region transcription start site region 76297
Tssr76298 8 12873902 to 12873929 27 + TSS region transcription start site region 76298
Gm15353 8 12879878 to 12883726 3848 - antisense lncRNA gene predicted gene 15353
Gm15351 8 12912713 to 12915427 2714 - antisense lncRNA gene predicted gene 15351
Cpgi20106 8 12915236 to 12915942 706 CpG island CpG island 20106
Tssr76299 8 12915677 to 12915690 13 + TSS region transcription start site region 76299
Tssr80412 8 12915733 to 12915778 45 - TSS region transcription start site region 80412
Tssr76300 8 12915879 to 12915966 87 + TSS region transcription start site region 76300
Tssr76301 8 12926192 to 12926201 9 + TSS region transcription start site region 76301
Tssr76302 8 12926204 to 12926218 14 + TSS region transcription start site region 76302
Tssr76303 8 12926268 to 12926291 23 + TSS region transcription start site region 76303
Tssr76304 8 12926299 to 12926317 18 + TSS region transcription start site region 76304
Tssr76305 8 12931672 to 12931711 39 + TSS region transcription start site region 76305
Tssr76306 8 12931718 to 12931750 32 + TSS region transcription start site region 76306
Tssr76307 8 12940928 to 12940945 17 + TSS region transcription start site region 76307
Cpgi20107 8 12947828 to 12948105 277 CpG island CpG island 20107
Tssr76308 8 12947865 to 12947931 66 + TSS region transcription start site region 76308
Tssr76309 8 12947935 to 12947962 27 + TSS region transcription start site region 76309
Gm38671 8 12947941 to 12948070 129 + miRNA gene predicted gene, 38671
Tssr76310 8 12947965 to 12947976 11 + TSS region transcription start site region 76310
Tssr76311 8 12947981 to 12948010 29 + TSS region transcription start site region 76311
Tssr76312 8 12949372 to 12949383 11 + TSS region transcription start site region 76312
Tssr76313 8 12949416 to 12949428 12 + TSS region transcription start site region 76313
Tssr76314 8 12949430 to 12949469 39 + TSS region transcription start site region 76314
Tssr76315 8 12949480 to 12949491 11 + TSS region transcription start site region 76315
Tssr76316 8 12949494 to 12949510 16 + TSS region transcription start site region 76316
Tssr76317 8 12949512 to 12949533 21 + TSS region transcription start site region 76317
Tssr76318 8 12951231 to 12951246 15 + TSS region transcription start site region 76318
Gm15349 8 12971826 to 12972029 203 - pseudogene predicted gene 15349
Tssr76319 8 12984246 to 12984330 84 + TSS region transcription start site region 76319
Tssr76320 8 12984370 to 12984379 9 + TSS region transcription start site region 76320