Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:124899341-125789347

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mrdq3 8 113712788 to 125329141 11616353 QTL modifier of retinal degeneration QTL 3
Sprtn 8 124897886 to 124906161 8275 + protein coding gene SprT-like N-terminal domain
Gm45709 8 124897894 to 124900130 2236 - antisense lncRNA gene predicted gene 45709
Egln1 8 124908586 to 124949319 40733 - protein coding gene egl-9 family hypoxia-inducible factor 1
Gm46060 8 124931890 to 124948225 16335 - lncRNA gene predicted gene, 46060
Tssr83468 8 124945737 to 124945741 4 - TSS region transcription start site region 83468
Cpgi21279 8 124946327 to 124946598 271 CpG island CpG island 21279
Cpgi21280 8 124947954 to 124949838 1884 CpG island CpG island 21280
Tssr83469 8 124949150 to 124949161 11 - TSS region transcription start site region 83469
Tssr83470 8 124949165 to 124949372 207 - TSS region transcription start site region 83470
Tssr80063 8 124949562 to 124949566 4 + TSS region transcription start site region 80063
D8Mit364 8 124960134 to 124960333 199 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 364
Gm39281 8 124968504 to 124970167 1663 - lncRNA gene predicted gene, 39281
Cpgi21281 8 125012633 to 125013709 1076 CpG island CpG island 21281
Tssr80064 8 125012928 to 125012948 20 + TSS region transcription start site region 80064
Tssr80065 8 125012952 to 125012975 23 + TSS region transcription start site region 80065
Tssr80066 8 125012986 to 125013006 20 + TSS region transcription start site region 80066
Tsnax 8 125012997 to 125034192 21195 + protein coding gene translin-associated factor X
Tssr80067 8 125013033 to 125013095 62 + TSS region transcription start site region 80067
Tssr80068 8 125013097 to 125013108 11 + TSS region transcription start site region 80068
Gm45874 8 125018826 to 125019171 345 - pseudogene predicted gene 45874
Cpgi21282 8 125053862 to 125054853 991 CpG island CpG island 21282
Disc1 8 125054195 to 125261858 207663 + protein coding gene disrupted in schizophrenia 1
Tssr83471 8 125054596 to 125054685 89 - TSS region transcription start site region 83471
Gm22197 8 125064015 to 125064072 57 + miRNA gene predicted gene, 22197
Cpgi21283 8 125088086 to 125088477 391 CpG island CpG island 21283
Tssr80069 8 125109186 to 125109190 4 + TSS region transcription start site region 80069
Tssr80070 8 125200601 to 125200607 6 + TSS region transcription start site region 80070
Gm16237 8 125224400 to 125227323 2923 - antisense lncRNA gene predicted gene 16237
D8Mit278 8 125243955 to 125244079 124 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 278
9430087C24Rik 8 125254323 to 125256778 2455 lncRNA gene RIKEN cDNA 9430087C24 gene
Tssr80071 8 125292116 to 125292121 5 + TSS region transcription start site region 80071
Tssr80072 8 125327880 to 125327885 5 + TSS region transcription start site region 80072
Tssr80073 8 125344341 to 125344347 6 + TSS region transcription start site region 80073
D8Mit140 8 125376362 to 125376493 131 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 140
Gm30713 8 125385478 to 125388842 3364 + lncRNA gene predicted gene, 30713
Tssr80074 8 125386292 to 125386310 18 + TSS region transcription start site region 80074
Sipa1l2 8 125418063 to 125569808 151745 - protein coding gene signal-induced proliferation-associated 1 like 2
D8Mit324 8 125448050 to 125448160 110 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 324
Tssr83472 8 125474951 to 125474980 29 - TSS region transcription start site region 83472
4930566D17Rik 8 125522492 to 125535725 13233 unclassified non-coding RNA gene RIKEN cDNA 4930566D17 gene
D8Wsu26e 8 125534225 to 125534401 176 DNA segment DNA segment, Chr 8, Wayne State University 26, expressed
Tssr83473 8 125538431 to 125538440 9 - TSS region transcription start site region 83473
Cpgi21284 8 125569122 to 125570671 1549 CpG island CpG island 21284
Tssr2734 8 125569495 to 125569498 3 + TSS region transcription start site region 2734
Tssr83474 8 125569790 to 125569834 44 - TSS region transcription start site region 83474
Tssr80075 8 125584626 to 125584643 17 + TSS region transcription start site region 80075
4930567H12Rik 8 125584638 to 125616670 32032 + lincRNA gene RIKEN cDNA 4930567H12 gene
Tssr80076 8 125584647 to 125584655 8 + TSS region transcription start site region 80076
Cpgi21285 8 125604394 to 125604696 302 CpG island CpG island 21285
Gm30871 8 125657709 to 125667123 9414 - lncRNA gene predicted gene, 30871
D8Ertd620e 8 125661544 to 125661768 224 DNA segment DNA segment, Chr 8, ERATO Doi 620, expressed
Cpgi21286 8 125669353 to 125670558 1205 CpG island CpG island 21286
Tssr83475 8 125669737 to 125669754 17 - TSS region transcription start site region 83475
Map10 8 125669818 to 125673359 3541 + protein coding gene microtubule-associated protein 10
Tssr80077 8 125669828 to 125669875 47 + TSS region transcription start site region 80077
Gm39282 8 125675197 to 125679755 4558 - lncRNA gene predicted gene, 39282
Gm39283 8 125685451 to 125696400 10949 + lncRNA gene predicted gene, 39283
Tssr80078 8 125685611 to 125685635 24 + TSS region transcription start site region 80078
Tssr83476 8 125699477 to 125699486 9 - TSS region transcription start site region 83476
Ntpcr 8 125729975 to 125748235 18260 + protein coding gene nucleoside-triphosphatase, cancer-related
Tssr80079 8 125730005 to 125730026 21 + TSS region transcription start site region 80079
Cpgi21287 8 125734061 to 125734618 557 CpG island CpG island 21287
Tssr83477 8 125734104 to 125734133 29 - TSS region transcription start site region 83477
Tssr80080 8 125734213 to 125734307 94 + TSS region transcription start site region 80080
Tssr80081 8 125734529 to 125734553 24 + TSS region transcription start site region 80081
Tssr80082 8 125743711 to 125743794 83 + TSS region transcription start site region 80082
Pcnx2 8 125751508 to 125898317 146809 - protein coding gene pecanex homolog 2
Gm39285 8 125753827 to 125754696 869 + lncRNA gene predicted gene, 39285
Gm39284 8 125774062 to 125790689 16627 + lncRNA gene predicted gene, 39284