Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:124899062-126665689

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179 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mrdq3 8 113712788 to 125329141 11616353 QTL modifier of retinal degeneration QTL 3
Sprtn 8 124897886 to 124906161 8275 + protein coding gene SprT-like N-terminal domain
Gm45709 8 124897894 to 124900130 2236 - antisense lncRNA gene predicted gene 45709
Egln1 8 124908586 to 124949319 40733 - protein coding gene egl-9 family hypoxia-inducible factor 1
Gm46060 8 124931890 to 124948225 16335 - lncRNA gene predicted gene, 46060
Tssr83468 8 124945737 to 124945741 4 - TSS region transcription start site region 83468
Cpgi21279 8 124946327 to 124946598 271 CpG island CpG island 21279
Cpgi21280 8 124947954 to 124949838 1884 CpG island CpG island 21280
Tssr83469 8 124949150 to 124949161 11 - TSS region transcription start site region 83469
Tssr83470 8 124949165 to 124949372 207 - TSS region transcription start site region 83470
Tssr80063 8 124949562 to 124949566 4 + TSS region transcription start site region 80063
D8Mit364 8 124960134 to 124960333 199 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 364
Gm39281 8 124968504 to 124970167 1663 - lncRNA gene predicted gene, 39281
Cpgi21281 8 125012633 to 125013709 1076 CpG island CpG island 21281
Tssr80064 8 125012928 to 125012948 20 + TSS region transcription start site region 80064
Tssr80065 8 125012952 to 125012975 23 + TSS region transcription start site region 80065
Tssr80066 8 125012986 to 125013006 20 + TSS region transcription start site region 80066
Tsnax 8 125012997 to 125034192 21195 + protein coding gene translin-associated factor X
Tssr80067 8 125013033 to 125013095 62 + TSS region transcription start site region 80067
Tssr80068 8 125013097 to 125013108 11 + TSS region transcription start site region 80068
Gm45874 8 125018826 to 125019171 345 - pseudogene predicted gene 45874
Cpgi21282 8 125053862 to 125054853 991 CpG island CpG island 21282
Disc1 8 125054195 to 125261858 207663 + protein coding gene disrupted in schizophrenia 1
Tssr83471 8 125054596 to 125054685 89 - TSS region transcription start site region 83471
Gm22197 8 125064015 to 125064072 57 + miRNA gene predicted gene, 22197
Cpgi21283 8 125088086 to 125088477 391 CpG island CpG island 21283
Tssr80069 8 125109186 to 125109190 4 + TSS region transcription start site region 80069
Tssr80070 8 125200601 to 125200607 6 + TSS region transcription start site region 80070
Gm16237 8 125224400 to 125227323 2923 - antisense lncRNA gene predicted gene 16237
D8Mit278 8 125243955 to 125244079 124 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 278
9430087C24Rik 8 125254323 to 125256778 2455 lncRNA gene RIKEN cDNA 9430087C24 gene
Tssr80071 8 125292116 to 125292121 5 + TSS region transcription start site region 80071
Tssr80072 8 125327880 to 125327885 5 + TSS region transcription start site region 80072
Tssr80073 8 125344341 to 125344347 6 + TSS region transcription start site region 80073
D8Mit140 8 125376362 to 125376493 131 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 140
Gm30713 8 125385478 to 125388842 3364 + lncRNA gene predicted gene, 30713
Tssr80074 8 125386292 to 125386310 18 + TSS region transcription start site region 80074
Sipa1l2 8 125418063 to 125569808 151745 - protein coding gene signal-induced proliferation-associated 1 like 2
D8Mit324 8 125448050 to 125448160 110 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 324
Tssr83472 8 125474951 to 125474980 29 - TSS region transcription start site region 83472
4930566D17Rik 8 125522492 to 125535725 13233 unclassified non-coding RNA gene RIKEN cDNA 4930566D17 gene
D8Wsu26e 8 125534225 to 125534401 176 DNA segment DNA segment, Chr 8, Wayne State University 26, expressed
Tssr83473 8 125538431 to 125538440 9 - TSS region transcription start site region 83473
Cpgi21284 8 125569122 to 125570671 1549 CpG island CpG island 21284
Tssr2734 8 125569495 to 125569498 3 + TSS region transcription start site region 2734
Tssr83474 8 125569790 to 125569834 44 - TSS region transcription start site region 83474
Tssr80075 8 125584626 to 125584643 17 + TSS region transcription start site region 80075
4930567H12Rik 8 125584638 to 125616670 32032 + lincRNA gene RIKEN cDNA 4930567H12 gene
Tssr80076 8 125584647 to 125584655 8 + TSS region transcription start site region 80076
Cpgi21285 8 125604394 to 125604696 302 CpG island CpG island 21285
Gm30871 8 125657709 to 125667123 9414 - lncRNA gene predicted gene, 30871
D8Ertd620e 8 125661544 to 125661768 224 DNA segment DNA segment, Chr 8, ERATO Doi 620, expressed
Cpgi21286 8 125669353 to 125670558 1205 CpG island CpG island 21286
Tssr83475 8 125669737 to 125669754 17 - TSS region transcription start site region 83475
Map10 8 125669818 to 125673359 3541 + protein coding gene microtubule-associated protein 10
Tssr80077 8 125669828 to 125669875 47 + TSS region transcription start site region 80077
Gm39282 8 125675197 to 125679755 4558 - lncRNA gene predicted gene, 39282
Gm39283 8 125685451 to 125696400 10949 + lncRNA gene predicted gene, 39283
Tssr80078 8 125685611 to 125685635 24 + TSS region transcription start site region 80078
Tssr83476 8 125699477 to 125699486 9 - TSS region transcription start site region 83476
Ntpcr 8 125729975 to 125748235 18260 + protein coding gene nucleoside-triphosphatase, cancer-related
Tssr80079 8 125730005 to 125730026 21 + TSS region transcription start site region 80079
Cpgi21287 8 125734061 to 125734618 557 CpG island CpG island 21287
Tssr83477 8 125734104 to 125734133 29 - TSS region transcription start site region 83477
Tssr80080 8 125734213 to 125734307 94 + TSS region transcription start site region 80080
Tssr80081 8 125734529 to 125734553 24 + TSS region transcription start site region 80081
Tssr80082 8 125743711 to 125743794 83 + TSS region transcription start site region 80082
Pcnx2 8 125751508 to 125898317 146809 - protein coding gene pecanex homolog 2
Gm39285 8 125753827 to 125754696 869 + lncRNA gene predicted gene, 39285
Gm39284 8 125774062 to 125790689 16627 + lncRNA gene predicted gene, 39284
Cpgi21288 8 125845333 to 125845596 263 CpG island CpG island 21288
Tssr83478 8 125851127 to 125851136 9 - TSS region transcription start site region 83478
Gm46061 8 125851139 to 125859718 8579 + lncRNA gene predicted gene, 46061
Cpgi21289 8 125897896 to 125898512 616 CpG island CpG island 21289
Tssr83479 8 125898291 to 125898322 31 - TSS region transcription start site region 83479
A730098A19Rik 8 125900119 to 125907972 7853 + antisense lncRNA gene RIKEN cDNA A730098A19 gene
Cpgi21290 8 125909783 to 125911916 2133 CpG island CpG island 21290
Tssr80083 8 125910339 to 125910350 11 + TSS region transcription start site region 80083
Tssr80084 8 125910426 to 125910469 43 + TSS region transcription start site region 80084
Map3k21 8 125910450 to 125947440 36990 + protein coding gene mitogen-activated protein kinase kinase kinase 21
Tssr80085 8 125919142 to 125919149 7 + TSS region transcription start site region 80085
Cpgi21291 8 125934876 to 125935226 350 CpG island CpG island 21291
Cpgi21292 8 125950275 to 125950646 371 CpG island CpG island 21292
Gm31069 8 125956891 to 125957978 1087 + lncRNA gene predicted gene, 31069
Tssr80086 8 125960287 to 125960314 27 + TSS region transcription start site region 80086
Gm42056 8 125960438 to 125964686 4248 + lncRNA gene predicted gene, 42056
Cpgi21293 8 125995089 to 125996349 1260 CpG island CpG island 21293
Tssr80087 8 125995139 to 125995185 46 + TSS region transcription start site region 80087
Kcnk1 8 125995170 to 126030685 35515 + protein coding gene potassium channel, subfamily K, member 1
Tssr80088 8 125995341 to 125995346 5 + TSS region transcription start site region 80088
Tssr80089 8 125995375 to 125995404 29 + TSS region transcription start site region 80089
Tssr80090 8 125995407 to 125995473 66 + TSS region transcription start site region 80090
Cpgi21294 8 126007538 to 126007831 293 CpG island CpG island 21294
Cpgi21295 8 126024990 to 126025149 159 CpG island CpG island 21295
Gm45875 8 126029248 to 126046808 17560 - antisense lncRNA gene predicted gene 45875
Tssr80091 8 126029251 to 126029263 12 + TSS region transcription start site region 80091
Tssr80092 8 126029271 to 126029294 23 + TSS region transcription start site region 80092
Tssr2735 8 126029298 to 126029301 3 + TSS region transcription start site region 2735
Tssr80093 8 126029316 to 126029342 26 + TSS region transcription start site region 80093
Tssr2736 8 126029361 to 126029364 3 + TSS region transcription start site region 2736
Gm45876 8 126057816 to 126060524 2708 - unclassified gene predicted gene 45876
Gm46072 8 126072920 to 126120316 47396 + lncRNA gene predicted gene, 46072
Cpgi21296 8 126138413 to 126139750 1337 CpG island CpG island 21296
Tssr2737 8 126152790 to 126152793 3 - TSS region transcription start site region 2737
Cpgi21297 8 126258217 to 126258557 340 CpG island CpG island 21297
Gm31165 8 126281340 to 126292607 11267 - lncRNA gene predicted gene, 31165
Cpgi21298 8 126291657 to 126291867 210 CpG island CpG island 21298
Cpgi21299 8 126298324 to 126299172 848 CpG island CpG island 21299
Tssr80094 8 126298526 to 126298594 68 + TSS region transcription start site region 80094
Slc35f3 8 126298558 to 126395482 96924 + protein coding gene solute carrier family 35, member F3
Tssr80095 8 126298629 to 126298643 14 + TSS region transcription start site region 80095
Gm9168 8 126345667 to 126346575 908 + pseudogene predicted gene 9168
D8Mit279 8 126351846 to 126351926 80 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 279
Cpgi21300 8 126422173 to 126423033 860 CpG island CpG island 21300
Tssr80096 8 126422478 to 126422514 36 + TSS region transcription start site region 80096
Coa6 8 126422515 to 126425433 2918 + protein coding gene cytochrome c oxidase assembly factor 6
Tssr80097 8 126422520 to 126422559 39 + TSS region transcription start site region 80097
Tssr80098 8 126422561 to 126422575 14 + TSS region transcription start site region 80098
Tarbp1 8 126425329 to 126475065 49736 - protein coding gene TAR RNA binding protein 1
Cpgi21301 8 126473909 to 126475292 1383 CpG island CpG island 21301
Tssr83480 8 126475062 to 126475097 35 - TSS region transcription start site region 83480
Gm6091 8 126476248 to 126476412 164 - pseudogene predicted pseudogene 6091
Cpgi21302 8 126476584 to 126476872 288 CpG island CpG island 21302
Cpgi21303 8 126500996 to 126501236 240 CpG island CpG island 21303
5031438A03Rik 8 126518515 to 126519547 1032 unclassified non-coding RNA gene RIKEN cDNA 5031438A03 gene
D8Mit52 8 126534123 to 126534350 227 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 52
Tssr83481 8 126537353 to 126537387 34 - TSS region transcription start site region 83481
D8Mit42 8 126552317 to 126552465 148 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 42
Tssr80099 8 126556687 to 126556691 4 + TSS region transcription start site region 80099
Tssr80100 8 126566279 to 126566318 39 + TSS region transcription start site region 80100
Gm26759 8 126566970 to 126590988 24018 + antisense lncRNA gene predicted gene, 26759
Gm39286 8 126567112 to 126571925 4813 - lncRNA gene predicted gene, 39286
Tssr2738 8 126574747 to 126574750 3 - TSS region transcription start site region 2738
Cpgi21304 8 126583786 to 126585012 1226 CpG island CpG island 21304
Tssr83482 8 126584581 to 126584585 4 - TSS region transcription start site region 83482
Tssr83483 8 126585687 to 126585714 27 - TSS region transcription start site region 83483
Irf2bp2 8 126588296 to 126593436 5140 - protein coding gene interferon regulatory factor 2 binding protein 2
Tssr83484 8 126588478 to 126588489 11 - TSS region transcription start site region 83484
Tssr83485 8 126588647 to 126588655 8 - TSS region transcription start site region 83485
Tssr83486 8 126588674 to 126588692 18 - TSS region transcription start site region 83486
Tssr83487 8 126589451 to 126589467 16 - TSS region transcription start site region 83487
Tssr83488 8 126589536 to 126589570 34 - TSS region transcription start site region 83488
Tssr83489 8 126589587 to 126589607 20 - TSS region transcription start site region 83489
Tssr83490 8 126589612 to 126589626 14 - TSS region transcription start site region 83490
Tssr83491 8 126589708 to 126589726 18 - TSS region transcription start site region 83491
Tssr83492 8 126589776 to 126589787 11 - TSS region transcription start site region 83492
Tssr83493 8 126589889 to 126589904 15 - TSS region transcription start site region 83493
Tssr80101 8 126589942 to 126589958 16 + TSS region transcription start site region 80101
Tssr83494 8 126590057 to 126590104 47 - TSS region transcription start site region 83494
Tssr83495 8 126590449 to 126590469 20 - TSS region transcription start site region 83495
Tssr83496 8 126590744 to 126590769 25 - TSS region transcription start site region 83496
Tssr83497 8 126590989 to 126591001 12 - TSS region transcription start site region 83497
Tssr83498 8 126591492 to 126591520 28 - TSS region transcription start site region 83498
Tssr83499 8 126591634 to 126591645 11 - TSS region transcription start site region 83499
Tssr83500 8 126591648 to 126591672 24 - TSS region transcription start site region 83500
Tssr83501 8 126591703 to 126591740 37 - TSS region transcription start site region 83501
Tssr83502 8 126591766 to 126591784 18 - TSS region transcription start site region 83502
Tssr83503 8 126591914 to 126591926 12 - TSS region transcription start site region 83503
Tssr83504 8 126591985 to 126592000 15 - TSS region transcription start site region 83504
Cpgi21305 8 126592000 to 126595136 3136 CpG island CpG island 21305
Tssr83505 8 126592051 to 126592075 24 - TSS region transcription start site region 83505
Tssr83506 8 126592085 to 126592107 22 - TSS region transcription start site region 83506
Tssr80102 8 126592179 to 126592202 23 + TSS region transcription start site region 80102
Tssr83507 8 126592235 to 126592261 26 - TSS region transcription start site region 83507
Tssr80103 8 126592437 to 126592452 15 + TSS region transcription start site region 80103
Tssr83508 8 126593918 to 126593929 11 - TSS region transcription start site region 83508
Tssr83509 8 126593946 to 126593971 25 - TSS region transcription start site region 83509
Tssr83510 8 126593972 to 126593997 25 - TSS region transcription start site region 83510
Tssr83511 8 126594003 to 126594014 11 - TSS region transcription start site region 83511
Gm31546 8 126594265 to 126596168 1903 - lncRNA gene predicted gene, 31546
Tssr83512 8 126594562 to 126594568 6 - TSS region transcription start site region 83512
Tssr80104 8 126594693 to 126594712 19 + TSS region transcription start site region 80104
Tssr80105 8 126594793 to 126594822 29 + TSS region transcription start site region 80105
Tssr80106 8 126594827 to 126594853 26 + TSS region transcription start site region 80106
Tssr80107 8 126594895 to 126594917 22 + TSS region transcription start site region 80107
Tssr83513 8 126595946 to 126595983 37 - TSS region transcription start site region 83513
Tssr80108 8 126596216 to 126596221 5 + TSS region transcription start site region 80108
D8Mit122 8 126597988 to 126598127 139 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 122
Tssr80109 8 126662927 to 126662965 38 + TSS region transcription start site region 80109