Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:124714195-125601858

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mrdq3 8 113712788 to 125329141 11616353 QTL modifier of retinal degeneration QTL 3
Ttc13 8 124671332 to 124721983 50651 - protein coding gene tetratricopeptide repeat domain 13
Tssr83458 8 124716694 to 124716706 12 - TSS region transcription start site region 83458
Tssr83459 8 124716735 to 124716742 7 - TSS region transcription start site region 83459
Cpgi21272 8 124721475 to 124722685 1210 CpG island CpG island 21272
Tssr83460 8 124721956 to 124721999 43 - TSS region transcription start site region 83460
Arv1 8 124722139 to 124734123 11984 + protein coding gene ARV1 homolog, fatty acid homeostasis modulator
Tssr80034 8 124722145 to 124722187 42 + TSS region transcription start site region 80034
Fam89a 8 124740257 to 124751809 11552 - protein coding gene family with sequence similarity 89, member A
Cpgi21273 8 124751038 to 124752571 1533 CpG island CpG island 21273
Tssr83461 8 124751808 to 124751875 67 - TSS region transcription start site region 83461
Gm9172 8 124765261 to 124766214 953 + pseudogene predicted gene 9172
Cpgi21274 8 124775705 to 124775897 192 CpG island CpG island 21274
Gm45856 8 124781733 to 124782148 415 + pseudogene predicted gene 45856
Cpgi21275 8 124783271 to 124783554 283 CpG island CpG island 21275
Gm46059 8 124785254 to 124792679 7425 - lncRNA gene predicted gene, 46059
Cpgi21276 8 124792157 to 124795118 2961 CpG island CpG island 21276
Tssr80035 8 124792973 to 124792980 7 + TSS region transcription start site region 80035
Tssr80036 8 124793013 to 124793056 43 + TSS region transcription start site region 80036
Tssr80037 8 124793061 to 124793070 9 + TSS region transcription start site region 80037
Trim67 8 124793092 to 124834713 41621 + protein coding gene tripartite motif-containing 67
Tssr80038 8 124793491 to 124793514 23 + TSS region transcription start site region 80038
Tssr80039 8 124793790 to 124793821 31 + TSS region transcription start site region 80039
Tssr80040 8 124831016 to 124831028 12 + TSS region transcription start site region 80040
Tssr80041 8 124831138 to 124831152 14 + TSS region transcription start site region 80041
Gm16163 8 124831698 to 124863703 32005 + unclassified non-coding RNA gene predicted gene 16163
Tssr80042 8 124831707 to 124831744 37 + TSS region transcription start site region 80042
Tssr80043 8 124831755 to 124831771 16 + TSS region transcription start site region 80043
Tssr80044 8 124831783 to 124831799 16 + TSS region transcription start site region 80044
Tssr80045 8 124831803 to 124831814 11 + TSS region transcription start site region 80045
2810004N23Rik 8 124839355 to 124863029 23674 - protein coding gene RIKEN cDNA 2810004N23 gene
Cpgi21277 8 124862615 to 124863654 1039 CpG island CpG island 21277
Tssr80046 8 124862629 to 124862636 7 + TSS region transcription start site region 80046
Tssr80047 8 124862647 to 124862656 9 + TSS region transcription start site region 80047
Tssr80048 8 124862658 to 124862672 14 + TSS region transcription start site region 80048
Tssr83462 8 124862972 to 124863006 34 - TSS region transcription start site region 83462
Tssr83463 8 124863008 to 124863019 11 - TSS region transcription start site region 83463
Tssr83464 8 124863028 to 124863039 11 - TSS region transcription start site region 83464
Tssr80049 8 124863032 to 124863089 57 + TSS region transcription start site region 80049
Gnpat 8 124863033 to 124890057 27024 + protein coding gene glyceronephosphate O-acyltransferase
Tssr80050 8 124863101 to 124863114 13 + TSS region transcription start site region 80050
Tssr80051 8 124863191 to 124863227 36 + TSS region transcription start site region 80051
Tssr83465 8 124874679 to 124874688 9 - TSS region transcription start site region 83465
D1Ertd819 8 124889660 to 124889906 246 DNA segment DNA segment, Chr 1, ERATO Doi 819
Tssr80052 8 124892332 to 124892337 5 + TSS region transcription start site region 80052
Exoc8 8 124893108 to 124897705 4597 - protein coding gene exocyst complex component 8
Cpgi21278 8 124896306 to 124898804 2498 CpG island CpG island 21278
Tssr80053 8 124897273 to 124897297 24 + TSS region transcription start site region 80053
Tssr83466 8 124897685 to 124897757 72 - TSS region transcription start site region 83466
Tssr83467 8 124897760 to 124897782 22 - TSS region transcription start site region 83467
Tssr80054 8 124897846 to 124897869 23 + TSS region transcription start site region 80054
Tssr80055 8 124897877 to 124897901 24 + TSS region transcription start site region 80055
Sprtn 8 124897886 to 124906161 8275 + protein coding gene SprT-like N-terminal domain
Gm45709 8 124897894 to 124900130 2236 - antisense lncRNA gene predicted gene 45709
Tssr80056 8 124897910 to 124897927 17 + TSS region transcription start site region 80056
Tssr80057 8 124898103 to 124898154 51 + TSS region transcription start site region 80057
Tssr80058 8 124898436 to 124898449 13 + TSS region transcription start site region 80058
Tssr80059 8 124898454 to 124898472 18 + TSS region transcription start site region 80059
Tssr80060 8 124898476 to 124898483 7 + TSS region transcription start site region 80060
Tssr80061 8 124898486 to 124898502 16 + TSS region transcription start site region 80061
Tssr80062 8 124898504 to 124898524 20 + TSS region transcription start site region 80062
Egln1 8 124908586 to 124949319 40733 - protein coding gene egl-9 family hypoxia-inducible factor 1
Gm46060 8 124931890 to 124948225 16335 - lncRNA gene predicted gene, 46060
Tssr83468 8 124945737 to 124945741 4 - TSS region transcription start site region 83468
Cpgi21279 8 124946327 to 124946598 271 CpG island CpG island 21279
Cpgi21280 8 124947954 to 124949838 1884 CpG island CpG island 21280
Tssr83469 8 124949150 to 124949161 11 - TSS region transcription start site region 83469
Tssr83470 8 124949165 to 124949372 207 - TSS region transcription start site region 83470
Tssr80063 8 124949562 to 124949566 4 + TSS region transcription start site region 80063
D8Mit364 8 124960134 to 124960333 199 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 364
Gm39281 8 124968504 to 124970167 1663 - lncRNA gene predicted gene, 39281
Cpgi21281 8 125012633 to 125013709 1076 CpG island CpG island 21281
Tssr80064 8 125012928 to 125012948 20 + TSS region transcription start site region 80064
Tssr80065 8 125012952 to 125012975 23 + TSS region transcription start site region 80065
Tssr80066 8 125012986 to 125013006 20 + TSS region transcription start site region 80066
Tsnax 8 125012997 to 125034192 21195 + protein coding gene translin-associated factor X
Tssr80067 8 125013033 to 125013095 62 + TSS region transcription start site region 80067
Tssr80068 8 125013097 to 125013108 11 + TSS region transcription start site region 80068
Gm45874 8 125018826 to 125019171 345 - pseudogene predicted gene 45874
Cpgi21282 8 125053862 to 125054853 991 CpG island CpG island 21282
Disc1 8 125054195 to 125261858 207663 + protein coding gene disrupted in schizophrenia 1
Tssr83471 8 125054596 to 125054685 89 - TSS region transcription start site region 83471
Gm22197 8 125064015 to 125064072 57 + miRNA gene predicted gene, 22197
Cpgi21283 8 125088086 to 125088477 391 CpG island CpG island 21283
Tssr80069 8 125109186 to 125109190 4 + TSS region transcription start site region 80069
Tssr80070 8 125200601 to 125200607 6 + TSS region transcription start site region 80070
Gm16237 8 125224400 to 125227323 2923 - antisense lncRNA gene predicted gene 16237
D8Mit278 8 125243955 to 125244079 124 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 278
9430087C24Rik 8 125254323 to 125256778 2455 lncRNA gene RIKEN cDNA 9430087C24 gene
Tssr80071 8 125292116 to 125292121 5 + TSS region transcription start site region 80071
Tssr80072 8 125327880 to 125327885 5 + TSS region transcription start site region 80072
Tssr80073 8 125344341 to 125344347 6 + TSS region transcription start site region 80073
D8Mit140 8 125376362 to 125376493 131 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 140
Gm30713 8 125385478 to 125388842 3364 + lncRNA gene predicted gene, 30713
Tssr80074 8 125386292 to 125386310 18 + TSS region transcription start site region 80074
Sipa1l2 8 125418063 to 125569808 151745 - protein coding gene signal-induced proliferation-associated 1 like 2
D8Mit324 8 125448050 to 125448160 110 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 324
Tssr83472 8 125474951 to 125474980 29 - TSS region transcription start site region 83472
4930566D17Rik 8 125522492 to 125535725 13233 unclassified non-coding RNA gene RIKEN cDNA 4930566D17 gene
D8Wsu26e 8 125534225 to 125534401 176 DNA segment DNA segment, Chr 8, Wayne State University 26, expressed
Tssr83473 8 125538431 to 125538440 9 - TSS region transcription start site region 83473
Cpgi21284 8 125569122 to 125570671 1549 CpG island CpG island 21284
Tssr2734 8 125569495 to 125569498 3 + TSS region transcription start site region 2734
Tssr83474 8 125569790 to 125569834 44 - TSS region transcription start site region 83474
Tssr80075 8 125584626 to 125584643 17 + TSS region transcription start site region 80075
4930567H12Rik 8 125584638 to 125616670 32032 + lincRNA gene RIKEN cDNA 4930567H12 gene
Tssr80076 8 125584647 to 125584655 8 + TSS region transcription start site region 80076