Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:12432899-12575341

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28 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sox1ot 8 12385771 to 12436732 50961 + sense overlapping lncRNA gene Sox1 overlapping transcript
Tssr80400 8 12439171 to 12439213 42 - TSS region transcription start site region 80400
Tssr76282 8 12439344 to 12439357 13 + TSS region transcription start site region 76282
Tssr76283 8 12439360 to 12439379 19 + TSS region transcription start site region 76283
Cpgi20098 8 12446321 to 12446611 290 CpG island CpG island 20098
D8Mit142 8 12449265 to 12449413 148 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 142
Tssr76284 8 12457240 to 12457265 25 + TSS region transcription start site region 76284
Tssr80401 8 12458016 to 12458024 8 - TSS region transcription start site region 80401
Gm33326 8 12461419 to 12466964 5545 - lincRNA gene predicted gene, 33326
Tssr80402 8 12466875 to 12466923 48 - TSS region transcription start site region 80402
Tssr80403 8 12466958 to 12466966 8 - TSS region transcription start site region 80403
Cpgi20099 8 12467811 to 12468035 224 CpG island CpG island 20099
Gm33532 8 12472134 to 12474458 2324 - lncRNA gene predicted gene, 33532
Cpgi20100 8 12477905 to 12478345 440 CpG island CpG island 20100
Tssr80404 8 12478131 to 12478150 19 - TSS region transcription start site region 80404
Cpgi20101 8 12502303 to 12502854 551 CpG island CpG island 20101
4933439N14Rik 8 12502899 to 12505341 2442 + lincRNA gene RIKEN cDNA 4933439N14 gene
D8Ertd67e 8 12538948 to 12539197 249 DNA segment DNA segment, Chr 8, ERATO Doi 67, expressed
D630011A20Rik 8 12554272 to 12573320 19048 - bidirectional promoter lncRNA gene RIKEN cDNA D630011A20 gene
Cpgi20102 8 12563044 to 12563292 248 CpG island CpG island 20102
D8Mit141 8 12566166 to 12566402 236 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 141
Tssr76285 8 12572820 to 12572831 11 + TSS region transcription start site region 76285
Tssr76286 8 12573017 to 12573060 43 + TSS region transcription start site region 76286
Spaca7 8 12573029 to 12600744 27715 + protein coding gene sperm acrosome associated 7
Tssr76287 8 12573064 to 12573076 12 + TSS region transcription start site region 76287
Tssr80405 8 12573205 to 12573262 57 - TSS region transcription start site region 80405
Tssr80406 8 12573279 to 12573290 11 - TSS region transcription start site region 80406
Tssr80407 8 12573311 to 12573336 25 - TSS region transcription start site region 80407