Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:124273033-125753095

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187 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mrdq3 8 113712788 to 125329141 11616353 QTL modifier of retinal degeneration QTL 3
Gm20388 8 119910841 to 124345722 4434881 + protein coding gene predicted gene 20388
Galnt2 8 124231394 to 124345722 114328 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 2
Tssr83431 8 124273956 to 124273966 10 - TSS region transcription start site region 83431
Tssr83432 8 124274472 to 124274487 15 - TSS region transcription start site region 83432
Tssr80026 8 124274682 to 124274724 42 + TSS region transcription start site region 80026
1810008B01Rik 8 124305132 to 124306507 1375 - antisense lncRNA gene RIKEN cDNA 1810008B01 gene
Tssr80027 8 124318162 to 124318171 9 + TSS region transcription start site region 80027
Gm15775 8 124324778 to 124331795 7017 - antisense lncRNA gene predicted gene 15775
Tssr80028 8 124340566 to 124340569 3 + TSS region transcription start site region 80028
Tssr80029 8 124357232 to 124357244 12 + TSS region transcription start site region 80029
Gm24459 8 124357238 to 124357323 85 + snRNA gene predicted gene, 24459
Pgbd5 8 124369049 to 124434462 65413 - protein coding gene piggyBac transposable element derived 5
Tssr83433 8 124369899 to 124369918 19 - TSS region transcription start site region 83433
Tssr83434 8 124369963 to 124369972 9 - TSS region transcription start site region 83434
Tssr83435 8 124369987 to 124369999 12 - TSS region transcription start site region 83435
Cpgi21267 8 124384337 to 124384600 263 CpG island CpG island 21267
Tssr83436 8 124406383 to 124406388 5 - TSS region transcription start site region 83436
Cpgi21268 8 124433310 to 124434924 1614 CpG island CpG island 21268
Tssr83437 8 124434323 to 124434372 49 - TSS region transcription start site region 83437
Tssr83438 8 124434442 to 124434505 63 - TSS region transcription start site region 83438
C330016L05Rik 8 124445374 to 124460100 14726 - lncRNA gene RIKEN cDNA C330016L05 gene
Gm30209 8 124460710 to 124468237 7527 - lncRNA gene predicted gene, 30209
D8Mit323 8 124463020 to 124463120 100 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 323
D8Mit91 8 124464422 to 124464565 143 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 91
Phdlc2 8 124464422 to 129018580 4554158 QTL plasma HDL cholesterol 2
Gm39280 8 124508230 to 124512287 4057 - lncRNA gene predicted gene, 39280
Cpgi21269 8 124520504 to 124521329 825 CpG island CpG island 21269
Cog2 8 124520767 to 124552008 31241 + protein coding gene component of oligomeric golgi complex 2
Tssr80030 8 124520776 to 124520865 89 + TSS region transcription start site region 80030
Cpgi21270 8 124530257 to 124530456 199 CpG island CpG island 21270
Agt 8 124556587 to 124569707 13120 - protein coding gene angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
Tssr83439 8 124559308 to 124559317 9 - TSS region transcription start site region 83439
Tssr83440 8 124559319 to 124559329 10 - TSS region transcription start site region 83440
Tssr2731 8 124562826 to 124562832 6 - TSS region transcription start site region 2731
Tssr83441 8 124563766 to 124563777 11 - TSS region transcription start site region 83441
Tssr83442 8 124563871 to 124563905 34 - TSS region transcription start site region 83442
Tssr83443 8 124563930 to 124563938 8 - TSS region transcription start site region 83443
Tssr83444 8 124563941 to 124563955 14 - TSS region transcription start site region 83444
Tssr83445 8 124564180 to 124564193 13 - TSS region transcription start site region 83445
Tssr83446 8 124564346 to 124564361 15 - TSS region transcription start site region 83446
Tssr83447 8 124564448 to 124564482 34 - TSS region transcription start site region 83447
Tssr83448 8 124568869 to 124568873 4 - TSS region transcription start site region 83448
Tssr83449 8 124569696 to 124569714 18 - TSS region transcription start site region 83449
Tssr83450 8 124569845 to 124569867 22 - TSS region transcription start site region 83450
Tssr80031 8 124576075 to 124576090 15 + TSS region transcription start site region 80031
Tssr80032 8 124576105 to 124576126 21 + TSS region transcription start site region 80032
Capn9 8 124576111 to 124618731 42620 + protein coding gene calpain 9
Tssr2732 8 124585327 to 124585329 2 + TSS region transcription start site region 2732
Tssr80033 8 124614181 to 124614219 38 + TSS region transcription start site region 80033
Tssr2733 8 124614559 to 124614581 22 + TSS region transcription start site region 2733
2310022B05Rik 8 124635756 to 124663369 27613 - protein coding gene RIKEN cDNA 2310022B05 gene
Tssr83451 8 124636998 to 124637013 15 - TSS region transcription start site region 83451
Tssr83452 8 124639336 to 124639340 4 - TSS region transcription start site region 83452
Tssr83453 8 124651744 to 124651781 37 - TSS region transcription start site region 83453
Cpgi21271 8 124662497 to 124663857 1360 CpG island CpG island 21271
Tssr83454 8 124663143 to 124663230 87 - TSS region transcription start site region 83454
Tssr83455 8 124663368 to 124663383 15 - TSS region transcription start site region 83455
Tssr83456 8 124663385 to 124663409 24 - TSS region transcription start site region 83456
Tssr83457 8 124663411 to 124663432 21 - TSS region transcription start site region 83457
Ttc13 8 124671332 to 124721983 50651 - protein coding gene tetratricopeptide repeat domain 13
Gm46058 8 124686936 to 124688524 1588 - protein coding gene predicted gene, 46058
Gm30273 8 124690366 to 124692587 2221 - lncRNA gene predicted gene, 30273
Tssr83458 8 124716694 to 124716706 12 - TSS region transcription start site region 83458
Tssr83459 8 124716735 to 124716742 7 - TSS region transcription start site region 83459
Cpgi21272 8 124721475 to 124722685 1210 CpG island CpG island 21272
Tssr83460 8 124721956 to 124721999 43 - TSS region transcription start site region 83460
Arv1 8 124722139 to 124734123 11984 + protein coding gene ARV1 homolog, fatty acid homeostasis modulator
Tssr80034 8 124722145 to 124722187 42 + TSS region transcription start site region 80034
Fam89a 8 124740257 to 124751809 11552 - protein coding gene family with sequence similarity 89, member A
Cpgi21273 8 124751038 to 124752571 1533 CpG island CpG island 21273
Tssr83461 8 124751808 to 124751875 67 - TSS region transcription start site region 83461
Gm9172 8 124765261 to 124766214 953 + pseudogene predicted gene 9172
Cpgi21274 8 124775705 to 124775897 192 CpG island CpG island 21274
Gm45856 8 124781733 to 124782148 415 + pseudogene predicted gene 45856
Cpgi21275 8 124783271 to 124783554 283 CpG island CpG island 21275
Gm46059 8 124785254 to 124792679 7425 - lncRNA gene predicted gene, 46059
Cpgi21276 8 124792157 to 124795118 2961 CpG island CpG island 21276
Tssr80035 8 124792973 to 124792980 7 + TSS region transcription start site region 80035
Tssr80036 8 124793013 to 124793056 43 + TSS region transcription start site region 80036
Tssr80037 8 124793061 to 124793070 9 + TSS region transcription start site region 80037
Trim67 8 124793092 to 124834713 41621 + protein coding gene tripartite motif-containing 67
Tssr80038 8 124793491 to 124793514 23 + TSS region transcription start site region 80038
Tssr80039 8 124793790 to 124793821 31 + TSS region transcription start site region 80039
Tssr80040 8 124831016 to 124831028 12 + TSS region transcription start site region 80040
Tssr80041 8 124831138 to 124831152 14 + TSS region transcription start site region 80041
Gm16163 8 124831698 to 124863703 32005 + unclassified non-coding RNA gene predicted gene 16163
Tssr80042 8 124831707 to 124831744 37 + TSS region transcription start site region 80042
Tssr80043 8 124831755 to 124831771 16 + TSS region transcription start site region 80043
Tssr80044 8 124831783 to 124831799 16 + TSS region transcription start site region 80044
Tssr80045 8 124831803 to 124831814 11 + TSS region transcription start site region 80045
2810004N23Rik 8 124839355 to 124863029 23674 - protein coding gene RIKEN cDNA 2810004N23 gene
Cpgi21277 8 124862615 to 124863654 1039 CpG island CpG island 21277
Tssr80046 8 124862629 to 124862636 7 + TSS region transcription start site region 80046
Tssr80047 8 124862647 to 124862656 9 + TSS region transcription start site region 80047
Tssr80048 8 124862658 to 124862672 14 + TSS region transcription start site region 80048
Tssr83462 8 124862972 to 124863006 34 - TSS region transcription start site region 83462
Tssr83463 8 124863008 to 124863019 11 - TSS region transcription start site region 83463
Tssr83464 8 124863028 to 124863039 11 - TSS region transcription start site region 83464
Tssr80049 8 124863032 to 124863089 57 + TSS region transcription start site region 80049
Gnpat 8 124863033 to 124890057 27024 + protein coding gene glyceronephosphate O-acyltransferase
Tssr80050 8 124863101 to 124863114 13 + TSS region transcription start site region 80050
Tssr80051 8 124863191 to 124863227 36 + TSS region transcription start site region 80051
Tssr83465 8 124874679 to 124874688 9 - TSS region transcription start site region 83465
D1Ertd819 8 124889660 to 124889906 246 DNA segment DNA segment, Chr 1, ERATO Doi 819
Tssr80052 8 124892332 to 124892337 5 + TSS region transcription start site region 80052
Exoc8 8 124893108 to 124897705 4597 - protein coding gene exocyst complex component 8
Cpgi21278 8 124896306 to 124898804 2498 CpG island CpG island 21278
Tssr80053 8 124897273 to 124897297 24 + TSS region transcription start site region 80053
Tssr83466 8 124897685 to 124897757 72 - TSS region transcription start site region 83466
Tssr83467 8 124897760 to 124897782 22 - TSS region transcription start site region 83467
Tssr80054 8 124897846 to 124897869 23 + TSS region transcription start site region 80054
Tssr80055 8 124897877 to 124897901 24 + TSS region transcription start site region 80055
Sprtn 8 124897886 to 124906161 8275 + protein coding gene SprT-like N-terminal domain
Gm45709 8 124897894 to 124900130 2236 - antisense lncRNA gene predicted gene 45709
Tssr80056 8 124897910 to 124897927 17 + TSS region transcription start site region 80056
Tssr80057 8 124898103 to 124898154 51 + TSS region transcription start site region 80057
Tssr80058 8 124898436 to 124898449 13 + TSS region transcription start site region 80058
Tssr80059 8 124898454 to 124898472 18 + TSS region transcription start site region 80059
Tssr80060 8 124898476 to 124898483 7 + TSS region transcription start site region 80060
Tssr80061 8 124898486 to 124898502 16 + TSS region transcription start site region 80061
Tssr80062 8 124898504 to 124898524 20 + TSS region transcription start site region 80062
Egln1 8 124908586 to 124949319 40733 - protein coding gene egl-9 family hypoxia-inducible factor 1
Gm46060 8 124931890 to 124948225 16335 - lncRNA gene predicted gene, 46060
Tssr83468 8 124945737 to 124945741 4 - TSS region transcription start site region 83468
Cpgi21279 8 124946327 to 124946598 271 CpG island CpG island 21279
Cpgi21280 8 124947954 to 124949838 1884 CpG island CpG island 21280
Tssr83469 8 124949150 to 124949161 11 - TSS region transcription start site region 83469
Tssr83470 8 124949165 to 124949372 207 - TSS region transcription start site region 83470
Tssr80063 8 124949562 to 124949566 4 + TSS region transcription start site region 80063
D8Mit364 8 124960134 to 124960333 199 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 364
Gm39281 8 124968504 to 124970167 1663 - lncRNA gene predicted gene, 39281
Cpgi21281 8 125012633 to 125013709 1076 CpG island CpG island 21281
Tssr80064 8 125012928 to 125012948 20 + TSS region transcription start site region 80064
Tssr80065 8 125012952 to 125012975 23 + TSS region transcription start site region 80065
Tssr80066 8 125012986 to 125013006 20 + TSS region transcription start site region 80066
Tsnax 8 125012997 to 125034192 21195 + protein coding gene translin-associated factor X
Tssr80067 8 125013033 to 125013095 62 + TSS region transcription start site region 80067
Tssr80068 8 125013097 to 125013108 11 + TSS region transcription start site region 80068
Gm45874 8 125018826 to 125019171 345 - pseudogene predicted gene 45874
Cpgi21282 8 125053862 to 125054853 991 CpG island CpG island 21282
Disc1 8 125054195 to 125261858 207663 + protein coding gene disrupted in schizophrenia 1
Tssr83471 8 125054596 to 125054685 89 - TSS region transcription start site region 83471
Gm22197 8 125064015 to 125064072 57 + miRNA gene predicted gene, 22197
Cpgi21283 8 125088086 to 125088477 391 CpG island CpG island 21283
Tssr80069 8 125109186 to 125109190 4 + TSS region transcription start site region 80069
Tssr80070 8 125200601 to 125200607 6 + TSS region transcription start site region 80070
Gm16237 8 125224400 to 125227323 2923 - antisense lncRNA gene predicted gene 16237
D8Mit278 8 125243955 to 125244079 124 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 278
9430087C24Rik 8 125254323 to 125256778 2455 lncRNA gene RIKEN cDNA 9430087C24 gene
Tssr80071 8 125292116 to 125292121 5 + TSS region transcription start site region 80071
Tssr80072 8 125327880 to 125327885 5 + TSS region transcription start site region 80072
Tssr80073 8 125344341 to 125344347 6 + TSS region transcription start site region 80073
D8Mit140 8 125376362 to 125376493 131 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 140
Gm30713 8 125385478 to 125388842 3364 + lncRNA gene predicted gene, 30713
Tssr80074 8 125386292 to 125386310 18 + TSS region transcription start site region 80074
Sipa1l2 8 125418063 to 125569808 151745 - protein coding gene signal-induced proliferation-associated 1 like 2
D8Mit324 8 125448050 to 125448160 110 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 324
Tssr83472 8 125474951 to 125474980 29 - TSS region transcription start site region 83472
4930566D17Rik 8 125522492 to 125535725 13233 unclassified non-coding RNA gene RIKEN cDNA 4930566D17 gene
D8Wsu26e 8 125534225 to 125534401 176 DNA segment DNA segment, Chr 8, Wayne State University 26, expressed
Tssr83473 8 125538431 to 125538440 9 - TSS region transcription start site region 83473
Cpgi21284 8 125569122 to 125570671 1549 CpG island CpG island 21284
Tssr2734 8 125569495 to 125569498 3 + TSS region transcription start site region 2734
Tssr83474 8 125569790 to 125569834 44 - TSS region transcription start site region 83474
Tssr80075 8 125584626 to 125584643 17 + TSS region transcription start site region 80075
4930567H12Rik 8 125584638 to 125616670 32032 + lincRNA gene RIKEN cDNA 4930567H12 gene
Tssr80076 8 125584647 to 125584655 8 + TSS region transcription start site region 80076
Cpgi21285 8 125604394 to 125604696 302 CpG island CpG island 21285
Gm30871 8 125657709 to 125667123 9414 - lncRNA gene predicted gene, 30871
D8Ertd620e 8 125661544 to 125661768 224 DNA segment DNA segment, Chr 8, ERATO Doi 620, expressed
Cpgi21286 8 125669353 to 125670558 1205 CpG island CpG island 21286
Tssr83475 8 125669737 to 125669754 17 - TSS region transcription start site region 83475
Map10 8 125669818 to 125673359 3541 + protein coding gene microtubule-associated protein 10
Tssr80077 8 125669828 to 125669875 47 + TSS region transcription start site region 80077
Gm39282 8 125675197 to 125679755 4558 - lncRNA gene predicted gene, 39282
Gm39283 8 125685451 to 125696400 10949 + lncRNA gene predicted gene, 39283
Tssr80078 8 125685611 to 125685635 24 + TSS region transcription start site region 80078
Tssr83476 8 125699477 to 125699486 9 - TSS region transcription start site region 83476
Ntpcr 8 125729975 to 125748235 18260 + protein coding gene nucleoside-triphosphatase, cancer-related
Tssr80079 8 125730005 to 125730026 21 + TSS region transcription start site region 80079
Cpgi21287 8 125734061 to 125734618 557 CpG island CpG island 21287
Tssr83477 8 125734104 to 125734133 29 - TSS region transcription start site region 83477
Tssr80080 8 125734213 to 125734307 94 + TSS region transcription start site region 80080
Tssr80081 8 125734529 to 125734553 24 + TSS region transcription start site region 80081
Tssr80082 8 125743711 to 125743794 83 + TSS region transcription start site region 80082
Pcnx2 8 125751508 to 125898317 146809 - protein coding gene pecanex homolog 2