MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 8:12399360-12479379

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19 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Sox1ot	8	12385771 to 12436732	50961	+	sense overlapping lncRNA gene	Sox1 overlapping transcript
Sox1	8	12395519 to 12399555	4036	+	protein coding gene	SRY (sex determining region Y)-box 1
Cpgi20095	8	12400882 to 12401963	1081		CpG island	CpG island 20095
Cpgi20096	8	12428394 to 12428556	162		CpG island	CpG island 20096
Cpgi20097	8	12430168 to 12431540	1372		CpG island	CpG island 20097
Tssr80400	8	12439171 to 12439213	42	-	TSS region	transcription start site region 80400
Tssr76282	8	12439344 to 12439357	13	+	TSS region	transcription start site region 76282
Tssr76283	8	12439360 to 12439379	19	+	TSS region	transcription start site region 76283
Cpgi20098	8	12446321 to 12446611	290		CpG island	CpG island 20098
D8Mit142	8	12449265 to 12449413	148		DNA segment	DNA segment, Chr 8, Massachusetts Institute of Technology 142
Tssr76284	8	12457240 to 12457265	25	+	TSS region	transcription start site region 76284
Tssr80401	8	12458016 to 12458024	8	-	TSS region	transcription start site region 80401
Gm33326	8	12461419 to 12466964	5545	-	lincRNA gene	predicted gene, 33326
Tssr80402	8	12466875 to 12466923	48	-	TSS region	transcription start site region 80402
Tssr80403	8	12466958 to 12466966	8	-	TSS region	transcription start site region 80403
Cpgi20099	8	12467811 to 12468035	224		CpG island	CpG island 20099
Gm33532	8	12472134 to 12474458	2324	-	lncRNA gene	predicted gene, 33532
Cpgi20100	8	12477905 to 12478345	440		CpG island	CpG island 20100
Tssr80404	8	12478131 to 12478150	19	-	TSS region	transcription start site region 80404