Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:12392002-13122027

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167 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sox1ot 8 12385771 to 12436732 50961 + sense overlapping lncRNA gene Sox1 overlapping transcript
Cpgi20094 8 12394834 to 12397978 3144 CpG island CpG island 20094
Tssr76269 8 12395287 to 12395295 8 + TSS region transcription start site region 76269
Tssr76270 8 12395500 to 12395511 11 + TSS region transcription start site region 76270
Sox1 8 12395519 to 12399555 4036 + protein coding gene SRY (sex determining region Y)-box 1
Tssr76271 8 12395526 to 12395531 5 + TSS region transcription start site region 76271
Tssr76272 8 12395603 to 12395621 18 + TSS region transcription start site region 76272
Tssr76273 8 12395629 to 12395644 15 + TSS region transcription start site region 76273
Tssr76274 8 12395670 to 12395682 12 + TSS region transcription start site region 76274
Tssr76275 8 12395843 to 12395852 9 + TSS region transcription start site region 76275
Tssr76276 8 12395874 to 12395885 11 + TSS region transcription start site region 76276
Tssr76277 8 12395892 to 12395919 27 + TSS region transcription start site region 76277
Tssr76278 8 12396116 to 12396127 11 + TSS region transcription start site region 76278
Tssr76279 8 12396205 to 12396222 17 + TSS region transcription start site region 76279
Tssr76280 8 12396267 to 12396279 12 + TSS region transcription start site region 76280
Tssr76281 8 12396320 to 12396363 43 + TSS region transcription start site region 76281
Gm25239 8 12396403 to 12396488 85 + miRNA gene predicted gene, 25239
Cpgi20095 8 12400882 to 12401963 1081 CpG island CpG island 20095
Cpgi20096 8 12428394 to 12428556 162 CpG island CpG island 20096
Cpgi20097 8 12430168 to 12431540 1372 CpG island CpG island 20097
Tssr80400 8 12439171 to 12439213 42 - TSS region transcription start site region 80400
Tssr76282 8 12439344 to 12439357 13 + TSS region transcription start site region 76282
Tssr76283 8 12439360 to 12439379 19 + TSS region transcription start site region 76283
Cpgi20098 8 12446321 to 12446611 290 CpG island CpG island 20098
D8Mit142 8 12449265 to 12449413 148 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 142
Tssr76284 8 12457240 to 12457265 25 + TSS region transcription start site region 76284
Tssr80401 8 12458016 to 12458024 8 - TSS region transcription start site region 80401
Gm33326 8 12461419 to 12466964 5545 - lincRNA gene predicted gene, 33326
Tssr80402 8 12466875 to 12466923 48 - TSS region transcription start site region 80402
Tssr80403 8 12466958 to 12466966 8 - TSS region transcription start site region 80403
Cpgi20099 8 12467811 to 12468035 224 CpG island CpG island 20099
Gm33532 8 12472134 to 12474458 2324 - lncRNA gene predicted gene, 33532
Cpgi20100 8 12477905 to 12478345 440 CpG island CpG island 20100
Tssr80404 8 12478131 to 12478150 19 - TSS region transcription start site region 80404
Cpgi20101 8 12502303 to 12502854 551 CpG island CpG island 20101
4933439N14Rik 8 12502899 to 12505341 2442 + lincRNA gene RIKEN cDNA 4933439N14 gene
D8Ertd67e 8 12538948 to 12539197 249 DNA segment DNA segment, Chr 8, ERATO Doi 67, expressed
D630011A20Rik 8 12554272 to 12573320 19048 - bidirectional promoter lncRNA gene RIKEN cDNA D630011A20 gene
Cpgi20102 8 12563044 to 12563292 248 CpG island CpG island 20102
D8Mit141 8 12566166 to 12566402 236 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 141
Tssr76285 8 12572820 to 12572831 11 + TSS region transcription start site region 76285
Tssr76286 8 12573017 to 12573060 43 + TSS region transcription start site region 76286
Spaca7 8 12573029 to 12600744 27715 + protein coding gene sperm acrosome associated 7
Tssr76287 8 12573064 to 12573076 12 + TSS region transcription start site region 76287
Tssr80405 8 12573205 to 12573262 57 - TSS region transcription start site region 80405
Tssr80406 8 12573279 to 12573290 11 - TSS region transcription start site region 80406
Tssr80407 8 12573311 to 12573336 25 - TSS region transcription start site region 80407
Tssr76288 8 12589197 to 12589201 4 + TSS region transcription start site region 76288
Tubgcp3 8 12614277 to 12672243 57966 - protein coding gene tubulin, gamma complex associated protein 3
Tssr2492 8 12647192 to 12647194 2 + TSS region transcription start site region 2492
Gm26483 8 12666095 to 12666198 103 + miRNA gene predicted gene, 26483
Cpgi20103 8 12671591 to 12672735 1144 CpG island CpG island 20103
Tssr80408 8 12672099 to 12672132 33 - TSS region transcription start site region 80408
Tssr80409 8 12672135 to 12672146 11 - TSS region transcription start site region 80409
4931415C17Rik 8 12672391 to 12679238 6847 + lncRNA gene RIKEN cDNA 4931415C17 gene
Tssr2493 8 12672426 to 12672457 31 + TSS region transcription start site region 2493
2810487C13Rik 8 12674307 to 12675247 940 unclassified gene RIKEN cDNA 2810487C13 gene
Gm15348 8 12706944 to 12719127 12183 - lincRNA gene predicted gene 15348
Gm39133 8 12749201 to 12751308 2107 + lncRNA gene predicted gene, 39133
Gm33587 8 12753823 to 12756988 3165 - lncRNA gene predicted gene, 33587
Cpgi20104 8 12756462 to 12757942 1480 CpG island CpG island 20104
Tssr2494 8 12756790 to 12756833 43 - TSS region transcription start site region 2494
Tssr76289 8 12757002 to 12757027 25 + TSS region transcription start site region 76289
Atp11a 8 12757016 to 12868728 111712 + protein coding gene ATPase, class VI, type 11A
Tssr76290 8 12757030 to 12757065 35 + TSS region transcription start site region 76290
Tssr76291 8 12757078 to 12757089 11 + TSS region transcription start site region 76291
Tssr76292 8 12762645 to 12762657 12 + TSS region transcription start site region 76292
Tssr80410 8 12779619 to 12779623 4 - TSS region transcription start site region 80410
Tssr76293 8 12826193 to 12826215 22 + TSS region transcription start site region 76293
Gm15350 8 12828338 to 12831919 3581 - antisense lncRNA gene predicted gene 15350
Tssr80411 8 12831909 to 12831927 18 - TSS region transcription start site region 80411
Tssr76294 8 12842843 to 12842886 43 + TSS region transcription start site region 76294
Gm15347 8 12860358 to 12877344 16986 - antisense lncRNA gene predicted gene 15347
Tssr76295 8 12866646 to 12866661 15 + TSS region transcription start site region 76295
Tssr76296 8 12867112 to 12867116 4 + TSS region transcription start site region 76296
Gm33637 8 12872344 to 12873542 1198 - lncRNA gene predicted gene, 33637
Mcf2l 8 12873544 to 13020509 146965 + protein coding gene mcf.2 transforming sequence-like
Cpgi20105 8 12873784 to 12874279 495 CpG island CpG island 20105
Tssr76297 8 12873793 to 12873826 33 + TSS region transcription start site region 76297
Tssr76298 8 12873902 to 12873929 27 + TSS region transcription start site region 76298
Gm15353 8 12879878 to 12883726 3848 - antisense lncRNA gene predicted gene 15353
Gm15351 8 12912713 to 12915427 2714 - antisense lncRNA gene predicted gene 15351
Cpgi20106 8 12915236 to 12915942 706 CpG island CpG island 20106
Tssr76299 8 12915677 to 12915690 13 + TSS region transcription start site region 76299
Tssr80412 8 12915733 to 12915778 45 - TSS region transcription start site region 80412
Tssr76300 8 12915879 to 12915966 87 + TSS region transcription start site region 76300
Tssr76301 8 12926192 to 12926201 9 + TSS region transcription start site region 76301
Tssr76302 8 12926204 to 12926218 14 + TSS region transcription start site region 76302
Tssr76303 8 12926268 to 12926291 23 + TSS region transcription start site region 76303
Tssr76304 8 12926299 to 12926317 18 + TSS region transcription start site region 76304
Tssr76305 8 12931672 to 12931711 39 + TSS region transcription start site region 76305
Tssr76306 8 12931718 to 12931750 32 + TSS region transcription start site region 76306
Tssr76307 8 12940928 to 12940945 17 + TSS region transcription start site region 76307
Cpgi20107 8 12947828 to 12948105 277 CpG island CpG island 20107
Tssr76308 8 12947865 to 12947931 66 + TSS region transcription start site region 76308
Tssr76309 8 12947935 to 12947962 27 + TSS region transcription start site region 76309
Gm38671 8 12947941 to 12948070 129 + miRNA gene predicted gene, 38671
Tssr76310 8 12947965 to 12947976 11 + TSS region transcription start site region 76310
Tssr76311 8 12947981 to 12948010 29 + TSS region transcription start site region 76311
Tssr76312 8 12949372 to 12949383 11 + TSS region transcription start site region 76312
Tssr76313 8 12949416 to 12949428 12 + TSS region transcription start site region 76313
Tssr76314 8 12949430 to 12949469 39 + TSS region transcription start site region 76314
Tssr76315 8 12949480 to 12949491 11 + TSS region transcription start site region 76315
Tssr76316 8 12949494 to 12949510 16 + TSS region transcription start site region 76316
Tssr76317 8 12949512 to 12949533 21 + TSS region transcription start site region 76317
Tssr76318 8 12951231 to 12951246 15 + TSS region transcription start site region 76318
Gm15349 8 12971826 to 12972029 203 - pseudogene predicted gene 15349
Tssr76319 8 12984246 to 12984330 84 + TSS region transcription start site region 76319
Tssr76320 8 12984370 to 12984379 9 + TSS region transcription start site region 76320
Tssr76321 8 12997161 to 12997184 23 + TSS region transcription start site region 76321
Tssr76322 8 13012412 to 13012413 1 + TSS region transcription start site region 76322
Gm15352 8 13021941 to 13022210 269 + pseudogene predicted gene 15352
Tssr76323 8 13026024 to 13026056 32 + TSS region transcription start site region 76323
F7 8 13026034 to 13035809 9775 + protein coding gene coagulation factor VII
Tssr80413 8 13027701 to 13027735 34 - TSS region transcription start site region 80413
Tssr76324 8 13031929 to 13031950 21 + TSS region transcription start site region 76324
Tssr76325 8 13037292 to 13037303 11 + TSS region transcription start site region 76325
F10 8 13037308 to 13056676 19368 + protein coding gene coagulation factor X
Tssr76326 8 13037339 to 13037352 13 + TSS region transcription start site region 76326
Tssr76327 8 13037357 to 13037362 5 + TSS region transcription start site region 76327
Tssr76328 8 13037372 to 13037390 18 + TSS region transcription start site region 76328
Tssr76329 8 13037802 to 13037838 36 + TSS region transcription start site region 76329
Tssr76330 8 13037976 to 13037985 9 + TSS region transcription start site region 76330
Tssr76331 8 13039303 to 13039304 1 + TSS region transcription start site region 76331
Tssr76332 8 13039326 to 13039335 9 + TSS region transcription start site region 76332
Tssr76333 8 13039358 to 13039359 1 + TSS region transcription start site region 76333
Tssr76334 8 13039369 to 13039397 28 + TSS region transcription start site region 76334
Tssr76335 8 13039537 to 13039549 12 + TSS region transcription start site region 76335
Tssr76336 8 13042757 to 13042769 12 + TSS region transcription start site region 76336
Tssr76337 8 13042777 to 13042790 13 + TSS region transcription start site region 76337
Tssr76338 8 13052285 to 13052289 4 + TSS region transcription start site region 76338
Tssr76339 8 13055674 to 13055681 7 + TSS region transcription start site region 76339
Tssr76340 8 13055832 to 13055843 11 + TSS region transcription start site region 76340
Tssr2495 8 13055848 to 13055853 5 + TSS region transcription start site region 2495
Tssr76341 8 13055954 to 13055966 12 + TSS region transcription start site region 76341
Tssr76342 8 13055977 to 13055988 11 + TSS region transcription start site region 76342
Tssr76343 8 13056027 to 13056036 9 + TSS region transcription start site region 76343
Tssr76344 8 13056148 to 13056156 8 + TSS region transcription start site region 76344
Tssr76345 8 13056157 to 13056175 18 + TSS region transcription start site region 76345
Tssr76346 8 13060575 to 13060587 12 + TSS region transcription start site region 76346
Proz 8 13060581 to 13075006 14425 + protein coding gene protein Z, vitamin K-dependent plasma glycoprotein
Tssr76347 8 13060591 to 13060620 29 + TSS region transcription start site region 76347
Tssr76348 8 13060909 to 13060918 9 + TSS region transcription start site region 76348
Tssr76349 8 13060921 to 13060960 39 + TSS region transcription start site region 76349
Tssr76350 8 13060982 to 13061027 45 + TSS region transcription start site region 76350
Tssr76351 8 13068691 to 13068697 6 + TSS region transcription start site region 76351
Gm33691 8 13068774 to 13071080 2306 + protein coding gene predicted gene, 33691
Tssr76352 8 13073960 to 13073972 12 + TSS region transcription start site region 76352
Tssr76353 8 13074161 to 13074164 3 + TSS region transcription start site region 76353
Tssr76354 8 13074243 to 13074263 20 + TSS region transcription start site region 76354
Gm17023 8 13076065 to 13078954 2889 + antisense lncRNA gene predicted gene 17023
Pcid2 8 13077189 to 13105459 28270 - protein coding gene PCI domain containing 2
Tssr76355 8 13086448 to 13086456 8 + TSS region transcription start site region 76355
Gm17022 8 13086509 to 13087430 921 + pseudogene predicted gene 17022
Tssr80414 8 13090131 to 13090135 4 - TSS region transcription start site region 80414
Cpgi20108 8 13104321 to 13106717 2396 CpG island CpG island 20108
Tssr80415 8 13104815 to 13104839 24 - TSS region transcription start site region 80415
Tssr80416 8 13104959 to 13104990 31 - TSS region transcription start site region 80416
Tssr80417 8 13105353 to 13105376 23 - TSS region transcription start site region 80417
Tssr80418 8 13105431 to 13105484 53 - TSS region transcription start site region 80418
Tssr80419 8 13105485 to 13105508 23 - TSS region transcription start site region 80419
Tssr76356 8 13105618 to 13105627 9 + TSS region transcription start site region 76356
Cul4a 8 13105621 to 13147940 42319 + protein coding gene cullin 4A
Tssr76357 8 13105647 to 13105676 29 + TSS region transcription start site region 76357
Tssr76358 8 13105715 to 13105764 49 + TSS region transcription start site region 76358
Tssr76359 8 13105777 to 13105788 11 + TSS region transcription start site region 76359
4933411D12Rik 8 13120354 to 13121330 976 unclassified gene RIKEN cDNA 4933411D12 gene