Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:123892914-124412939

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105 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm20388 8 119910841 to 124345722 4434881 + protein coding gene predicted gene 20388
Acta1 8 123891769 to 123894751 2982 - protein coding gene actin, alpha 1, skeletal muscle
Cpgi21262 8 123891773 to 123893155 1382 CpG island CpG island 21262
Tssr83395 8 123892922 to 123892947 25 - TSS region transcription start site region 83395
Tssr79999 8 123892940 to 123892961 21 + TSS region transcription start site region 79999
Tssr83396 8 123892956 to 123893003 47 - TSS region transcription start site region 83396
Tssr83397 8 123893011 to 123893027 16 - TSS region transcription start site region 83397
Tssr83398 8 123893170 to 123893184 14 - TSS region transcription start site region 83398
Tssr83399 8 123893203 to 123893229 26 - TSS region transcription start site region 83399
Tssr80000 8 123893224 to 123893247 23 + TSS region transcription start site region 80000
Tssr83400 8 123893238 to 123893249 11 - TSS region transcription start site region 83400
Tssr83401 8 123893257 to 123893279 22 - TSS region transcription start site region 83401
Tssr80001 8 123893261 to 123893275 14 + TSS region transcription start site region 80001
Tssr83402 8 123893281 to 123893315 34 - TSS region transcription start site region 83402
Tssr83403 8 123893442 to 123893453 11 - TSS region transcription start site region 83403
Tssr83404 8 123893459 to 123893475 16 - TSS region transcription start site region 83404
Tssr83405 8 123893596 to 123893628 32 - TSS region transcription start site region 83405
Tssr80002 8 123893623 to 123893661 38 + TSS region transcription start site region 80002
Tssr83406 8 123893635 to 123893644 9 - TSS region transcription start site region 83406
Tssr83407 8 123893707 to 123893717 10 - TSS region transcription start site region 83407
Tssr83408 8 123894744 to 123894760 16 - TSS region transcription start site region 83408
Gm29773 8 123894896 to 123899136 4240 + antisense lncRNA gene predicted gene, 29773
D8Mit121 8 123895364 to 123895615 251 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 121
W3q5 8 123895615 to 71287817 -52607798 QTL weight 3 weeks QTL 5
Orq1 8 123895615 to 71287817 -52607798 QTL ovulation rate QTL 1
Tssr83409 8 123895747 to 123895766 19 - TSS region transcription start site region 83409
Tssr80003 8 123895853 to 123895862 9 + TSS region transcription start site region 80003
Tssr80004 8 123895937 to 123895948 11 + TSS region transcription start site region 80004
Tssr80005 8 123896197 to 123896220 23 + TSS region transcription start site region 80005
Tssr80006 8 123896234 to 123896276 42 + TSS region transcription start site region 80006
Nup133 8 123897123 to 123949265 52142 - protein coding gene nucleoporin 133
Tssr83410 8 123925865 to 123925874 9 - TSS region transcription start site region 83410
Tssr83411 8 123925891 to 123925913 22 - TSS region transcription start site region 83411
Tssr83412 8 123925929 to 123925940 11 - TSS region transcription start site region 83412
Tssr83413 8 123931005 to 123931012 7 - TSS region transcription start site region 83413
Cpgi21263 8 123948742 to 123949870 1128 CpG island CpG island 21263
Gm45890 8 123948790 to 123958935 10145 + antisense lncRNA gene predicted gene 45890
Tssr83414 8 123949201 to 123949287 86 - TSS region transcription start site region 83414
Tssr80007 8 123949410 to 123949437 27 + TSS region transcription start site region 80007
Tssr80008 8 123949446 to 123949465 19 + TSS region transcription start site region 80008
Abcb10 8 123952459 to 123983122 30663 - protein coding gene ATP-binding cassette, sub-family B (MDR/TAP), member 10
Tssr83415 8 123952868 to 123952874 6 - TSS region transcription start site region 83415
Tssr83416 8 123953750 to 123953753 3 - TSS region transcription start site region 83416
Tssr83417 8 123953770 to 123953776 6 - TSS region transcription start site region 83417
Tssr80009 8 123954010 to 123954041 31 + TSS region transcription start site region 80009
Tssr83418 8 123955769 to 123955773 4 - TSS region transcription start site region 83418
Tssr83419 8 123960191 to 123960211 20 - TSS region transcription start site region 83419
Tssr80010 8 123979296 to 123979302 6 + TSS region transcription start site region 80010
Cpgi21264 8 123982242 to 123983446 1204 CpG island CpG island 21264
Tssr83420 8 123982807 to 123982880 73 - TSS region transcription start site region 83420
Tssr80011 8 123983021 to 123983033 12 + TSS region transcription start site region 80011
Tssr83421 8 123983120 to 123983152 32 - TSS region transcription start site region 83421
Taf5l 8 123996310 to 124021309 24999 - protein coding gene TATA-box binding protein associated factor 5 like
Gm17827 8 124005305 to 124006046 741 + pseudogene predicted gene, 17827
Cpgi21265 8 124020467 to 124021846 1379 CpG island CpG island 21265
Tssr83422 8 124020934 to 124020955 21 - TSS region transcription start site region 83422
Tssr83423 8 124021043 to 124021106 63 - TSS region transcription start site region 83423
Tssr80012 8 124021155 to 124021201 46 + TSS region transcription start site region 80012
Tssr83424 8 124021359 to 124021445 86 - TSS region transcription start site region 83424
Tssr80013 8 124021452 to 124021515 63 + TSS region transcription start site region 80013
Urb2 8 124021508 to 124048505 26997 + protein coding gene URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
Tssr80014 8 124021519 to 124021530 11 + TSS region transcription start site region 80014
Tssr80015 8 124021568 to 124021579 11 + TSS region transcription start site region 80015
Mir1967 8 124022641 to 124022722 81 + miRNA gene microRNA 1967
Gm45732 8 124025072 to 124048412 23340 - antisense lncRNA gene predicted gene 45732
Tssr80016 8 124047145 to 124047162 17 + TSS region transcription start site region 80016
Tssr80017 8 124047607 to 124047615 8 + TSS region transcription start site region 80017
Gm29897 8 124049462 to 124073598 24136 + lncRNA gene predicted gene, 29897
Tssr80018 8 124066777 to 124066788 11 + TSS region transcription start site region 80018
Tssr80019 8 124066789 to 124066796 7 + TSS region transcription start site region 80019
Tssr80020 8 124067132 to 124067139 7 + TSS region transcription start site region 80020
D8Mit49 8 124070940 to 124071089 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 49
Gm30005 8 124075853 to 124088603 12750 - lncRNA gene predicted gene, 30005
Tssr83425 8 124080777 to 124080801 24 - TSS region transcription start site region 83425
Tssr83426 8 124080821 to 124080824 3 - TSS region transcription start site region 83426
Tssr83427 8 124080840 to 124080845 5 - TSS region transcription start site region 83427
Gm30081 8 124137873 to 124152961 15088 - lncRNA gene predicted gene, 30081
Tssr83428 8 124149796 to 124149800 4 - TSS region transcription start site region 83428
Tssr83429 8 124152804 to 124152815 11 - TSS region transcription start site region 83429
Tssr83430 8 124152914 to 124152939 25 - TSS region transcription start site region 83430
Gm3889 8 124160073 to 124160684 611 + pseudogene predicted gene 3889
D8Ski10 8 124190823 to 124191027 204 DNA segment DNA segment, Chr 8, Sloan-Kettering Institute 10
Gm42054 8 124196553 to 124206307 9754 + lncRNA gene predicted gene, 42054
Tssr80021 8 124197105 to 124197123 18 + TSS region transcription start site region 80021
Tssr80022 8 124197139 to 124197154 15 + TSS region transcription start site region 80022
Cpgi21266 8 124230931 to 124232589 1658 CpG island CpG island 21266
Tssr80023 8 124231359 to 124231450 91 + TSS region transcription start site region 80023
Galnt2 8 124231394 to 124345722 114328 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 2
Tssr80024 8 124231461 to 124231530 69 + TSS region transcription start site region 80024
Tssr80025 8 124271888 to 124271917 29 + TSS region transcription start site region 80025
Tssr83431 8 124273956 to 124273966 10 - TSS region transcription start site region 83431
Tssr83432 8 124274472 to 124274487 15 - TSS region transcription start site region 83432
Tssr80026 8 124274682 to 124274724 42 + TSS region transcription start site region 80026
1810008B01Rik 8 124305132 to 124306507 1375 - antisense lncRNA gene RIKEN cDNA 1810008B01 gene
Tssr80027 8 124318162 to 124318171 9 + TSS region transcription start site region 80027
Gm15775 8 124324778 to 124331795 7017 - antisense lncRNA gene predicted gene 15775
Tssr80028 8 124340566 to 124340569 3 + TSS region transcription start site region 80028
Tssr80029 8 124357232 to 124357244 12 + TSS region transcription start site region 80029
Gm24459 8 124357238 to 124357323 85 + snRNA gene predicted gene, 24459
Pgbd5 8 124369049 to 124434462 65413 - protein coding gene piggyBac transposable element derived 5
Tssr83433 8 124369899 to 124369918 19 - TSS region transcription start site region 83433
Tssr83434 8 124369963 to 124369972 9 - TSS region transcription start site region 83434
Tssr83435 8 124369987 to 124369999 12 - TSS region transcription start site region 83435
Cpgi21267 8 124384337 to 124384600 263 CpG island CpG island 21267
Tssr83436 8 124406383 to 124406388 5 - TSS region transcription start site region 83436