Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:123564782-123857730

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm25018 8 123565969 to 123566087 118 - rRNA gene predicted gene, 25018
n-R5s117 8 123567637 to 123567755 118 - rRNA gene nuclear encoded rRNA 5S 117
n-R5s118 8 123569328 to 123569446 118 - rRNA gene nuclear encoded rRNA 5S 118
n-R5s119 8 123571001 to 123571119 118 - rRNA gene nuclear encoded rRNA 5S 119
n-R5s120 8 123572710 to 123572828 118 - rRNA gene nuclear encoded rRNA 5S 120
n-R5s121 8 123574397 to 123574515 118 - rRNA gene nuclear encoded rRNA 5S 121
n-R5s122 8 123576076 to 123576194 118 - rRNA gene nuclear encoded rRNA 5S 122
n-R5s123 8 123577755 to 123577873 118 - rRNA gene nuclear encoded rRNA 5S 123
n-R5s124 8 123579450 to 123579568 118 - rRNA gene nuclear encoded rRNA 5S 124
n-R5s125 8 123581155 to 123581273 118 - rRNA gene nuclear encoded rRNA 5S 125
Gm24312 8 123582850 to 123582968 118 - rRNA gene predicted gene, 24312
n-R5s127 8 123584535 to 123584653 118 - rRNA gene nuclear encoded rRNA 5S 127
n-R5s128 8 123586242 to 123586360 118 - rRNA gene nuclear encoded rRNA 5S 128
n-R5s129 8 123587959 to 123588077 118 - rRNA gene nuclear encoded rRNA 5S 129
n-R5s130 8 123589654 to 123589772 118 - rRNA gene nuclear encoded rRNA 5S 130
n-R5s131 8 123591371 to 123591489 118 - rRNA gene nuclear encoded rRNA 5S 131
Gm26391 8 123593071 to 123593189 118 - rRNA gene predicted gene, 26391
n-R5s133 8 123594754 to 123594872 118 - rRNA gene nuclear encoded rRNA 5S 133
n-R5s134 8 123596457 to 123596575 118 - rRNA gene nuclear encoded rRNA 5S 134
Rn5s 8 123598158 to 123598276 118 - rRNA gene 5S RNA
n-R5s136 8 123599861 to 123599979 118 - rRNA gene nuclear encoded rRNA 5S 136
Rn5s-ps1 8 123601570 to 123601680 110 - pseudogene 5S RNA, pseudogene 1
Gm24089 8 123601572 to 123601680 108 - rRNA gene predicted gene, 24089
n-R5s138 8 123603247 to 123603365 118 - rRNA gene nuclear encoded rRNA 5S 138
n-R5s139 8 123604948 to 123605066 118 - rRNA gene nuclear encoded rRNA 5S 139
Gm22109 8 123606613 to 123606731 118 - rRNA gene predicted gene, 22109
n-R5s141 8 123608320 to 123608438 118 - rRNA gene nuclear encoded rRNA 5S 141
n-R5s142 8 123610017 to 123610135 118 - rRNA gene nuclear encoded rRNA 5S 142
n-R5s143 8 123611715 to 123611833 118 - rRNA gene nuclear encoded rRNA 5S 143
n-R5s144 8 123613414 to 123613532 118 - rRNA gene nuclear encoded rRNA 5S 144
Gm25212 8 123615099 to 123615217 118 - rRNA gene predicted gene, 25212
n-R5s146 8 123616810 to 123616928 118 - rRNA gene nuclear encoded rRNA 5S 146
Gm22291 8 123618536 to 123618654 118 - rRNA gene predicted gene, 22291
Gm23284 8 123620241 to 123620359 118 - rRNA gene predicted gene, 23284
n-R5s149 8 123621928 to 123622046 118 - rRNA gene nuclear encoded rRNA 5S 149
Gm23647 8 123623637 to 123623745 108 - rRNA gene predicted gene, 23647
Cpgi21255 8 123628858 to 123629449 591 CpG island CpG island 21255
Gm19600 8 123631028 to 123644623 13595 + lncRNA gene predicted gene, 19600
Tssr79979 8 123631214 to 123631218 4 + TSS region transcription start site region 79979
Gm35930 8 123648292 to 123651835 3543 + lncRNA gene predicted gene, 35930
Tssr79980 8 123649740 to 123649777 37 + TSS region transcription start site region 79980
Gm35874 8 123651026 to 123652736 1710 - lncRNA gene predicted gene, 35874
Cpgi21256 8 123653226 to 123654618 1392 CpG island CpG island 21256
Tssr79981 8 123653791 to 123653805 14 + TSS region transcription start site region 79981
Tssr79982 8 123653807 to 123653818 11 + TSS region transcription start site region 79982
Tssr79983 8 123653823 to 123653834 11 + TSS region transcription start site region 79983
Tssr79984 8 123653841 to 123653877 36 + TSS region transcription start site region 79984
Tssr79985 8 123653903 to 123653908 5 + TSS region transcription start site region 79985
Rhou 8 123653929 to 123663880 9951 + protein coding gene ras homolog family member U
Tssr83373 8 123655323 to 123655324 1 - TSS region transcription start site region 83373
Tssr83374 8 123655565 to 123655578 13 - TSS region transcription start site region 83374
D8Ski14 8 123672380 to 123672583 203 DNA segment DNA segment, Chr 8, Sloan-Kettering Institute 14
Gm35995 8 123694559 to 123696771 2212 - lncRNA gene predicted gene, 35995
Gm39277 8 123709782 to 123712730 2948 + lncRNA gene predicted gene, 39277
Gm36059 8 123716231 to 123718446 2215 - lncRNA gene predicted gene, 36059
Gm39278 8 123724444 to 123725690 1246 - lncRNA gene predicted gene, 39278
Gm45781 8 123727772 to 123735142 7370 - lincRNA gene predicted gene 45781
6030466F02Rik 8 123733958 to 123739941 5983 + lincRNA gene RIKEN cDNA 6030466F02 gene
Tssr79986 8 123738434 to 123738437 3 + TSS region transcription start site region 79986
4732419C18Rik 8 123744631 to 123754726 10095 - lincRNA gene RIKEN cDNA 4732419C18 gene
Tssr83375 8 123751090 to 123751093 3 - TSS region transcription start site region 83375
Tssr83376 8 123754138 to 123754160 22 - TSS region transcription start site region 83376
Tssr79987 8 123754332 to 123754360 28 + TSS region transcription start site region 79987
Gm45866 8 123754370 to 123767721 13351 + lincRNA gene predicted gene 45866
D8Mit277 8 123756975 to 123757075 100 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 277
Gm45865 8 123767551 to 123768495 944 + unclassified gene predicted gene 45865
Gm36188 8 123773770 to 123791079 17309 - lncRNA gene predicted gene, 36188
D8Mit148 8 123778841 to 123779078 237 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 148
Cpgi21257 8 123787584 to 123787787 203 CpG island CpG island 21257
Tssr83377 8 123793918 to 123793922 4 - TSS region transcription start site region 83377
D8Mit13 8 123797844 to 123797941 97 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 13
Cpgi21258 8 123805386 to 123806752 1366 CpG island CpG island 21258
Tssr79988 8 123805848 to 123805865 17 + TSS region transcription start site region 79988
Tssr79989 8 123805886 to 123805895 9 + TSS region transcription start site region 79989
Tssr79990 8 123805960 to 123805990 30 + TSS region transcription start site region 79990
Rab4a 8 123805985 to 123835287 29302 + protein coding gene RAB4A, member RAS oncogene family
Tssr79991 8 123805992 to 123806037 45 + TSS region transcription start site region 79991
Tssr79992 8 123806042 to 123806063 21 + TSS region transcription start site region 79992
Cpgi21259 8 123807030 to 123807323 293 CpG island CpG island 21259
Cpgi21260 8 123816835 to 123817016 181 CpG island CpG island 21260
2810455O05Rik 8 123838553 to 123840785 2232 - lincRNA gene RIKEN cDNA 2810455O05 gene
Ccsap 8 123840844 to 123860209 19365 - protein coding gene centriole, cilia and spindle associated protein
Tssr79993 8 123853791 to 123853794 3 + TSS region transcription start site region 79993
Gm4342 8 123853829 to 123854195 366 + pseudogene predicted gene 4342