Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:123542030-124072323

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195 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
n-R5s102 8 123542178 to 123542296 118 - rRNA gene nuclear encoded rRNA 5S 102
n-R5s103 8 123543873 to 123543991 118 - rRNA gene nuclear encoded rRNA 5S 103
n-R5s104 8 123545578 to 123545696 118 - rRNA gene nuclear encoded rRNA 5S 104
n-R5s105 8 123547265 to 123547383 118 - rRNA gene nuclear encoded rRNA 5S 105
n-R5s106 8 123548956 to 123549074 118 - rRNA gene nuclear encoded rRNA 5S 106
n-R5s107 8 123550667 to 123550785 118 - rRNA gene nuclear encoded rRNA 5S 107
n-R5s108 8 123552364 to 123552482 118 - rRNA gene nuclear encoded rRNA 5S 108
n-R5s109 8 123554060 to 123554178 118 - rRNA gene nuclear encoded rRNA 5S 109
n-R5s110 8 123555763 to 123555881 118 - rRNA gene nuclear encoded rRNA 5S 110
n-R5s111 8 123557490 to 123557608 118 - rRNA gene nuclear encoded rRNA 5S 111
n-R5s112 8 123559201 to 123559319 118 - rRNA gene nuclear encoded rRNA 5S 112
n-R5s113 8 123560888 to 123561006 118 - rRNA gene nuclear encoded rRNA 5S 113
n-R5s114 8 123562595 to 123562713 118 - rRNA gene nuclear encoded rRNA 5S 114
n-R5s115 8 123564286 to 123564404 118 - rRNA gene nuclear encoded rRNA 5S 115
Gm25018 8 123565969 to 123566087 118 - rRNA gene predicted gene, 25018
n-R5s117 8 123567637 to 123567755 118 - rRNA gene nuclear encoded rRNA 5S 117
n-R5s118 8 123569328 to 123569446 118 - rRNA gene nuclear encoded rRNA 5S 118
n-R5s119 8 123571001 to 123571119 118 - rRNA gene nuclear encoded rRNA 5S 119
n-R5s120 8 123572710 to 123572828 118 - rRNA gene nuclear encoded rRNA 5S 120
n-R5s121 8 123574397 to 123574515 118 - rRNA gene nuclear encoded rRNA 5S 121
n-R5s122 8 123576076 to 123576194 118 - rRNA gene nuclear encoded rRNA 5S 122
n-R5s123 8 123577755 to 123577873 118 - rRNA gene nuclear encoded rRNA 5S 123
n-R5s124 8 123579450 to 123579568 118 - rRNA gene nuclear encoded rRNA 5S 124
n-R5s125 8 123581155 to 123581273 118 - rRNA gene nuclear encoded rRNA 5S 125
Gm24312 8 123582850 to 123582968 118 - rRNA gene predicted gene, 24312
n-R5s127 8 123584535 to 123584653 118 - rRNA gene nuclear encoded rRNA 5S 127
n-R5s128 8 123586242 to 123586360 118 - rRNA gene nuclear encoded rRNA 5S 128
n-R5s129 8 123587959 to 123588077 118 - rRNA gene nuclear encoded rRNA 5S 129
n-R5s130 8 123589654 to 123589772 118 - rRNA gene nuclear encoded rRNA 5S 130
n-R5s131 8 123591371 to 123591489 118 - rRNA gene nuclear encoded rRNA 5S 131
Gm26391 8 123593071 to 123593189 118 - rRNA gene predicted gene, 26391
n-R5s133 8 123594754 to 123594872 118 - rRNA gene nuclear encoded rRNA 5S 133
n-R5s134 8 123596457 to 123596575 118 - rRNA gene nuclear encoded rRNA 5S 134
Rn5s 8 123598158 to 123598276 118 - rRNA gene 5S RNA
n-R5s136 8 123599861 to 123599979 118 - rRNA gene nuclear encoded rRNA 5S 136
Rn5s-ps1 8 123601570 to 123601680 110 - pseudogene 5S RNA, pseudogene 1
Gm24089 8 123601572 to 123601680 108 - rRNA gene predicted gene, 24089
n-R5s138 8 123603247 to 123603365 118 - rRNA gene nuclear encoded rRNA 5S 138
n-R5s139 8 123604948 to 123605066 118 - rRNA gene nuclear encoded rRNA 5S 139
Gm22109 8 123606613 to 123606731 118 - rRNA gene predicted gene, 22109
n-R5s141 8 123608320 to 123608438 118 - rRNA gene nuclear encoded rRNA 5S 141
n-R5s142 8 123610017 to 123610135 118 - rRNA gene nuclear encoded rRNA 5S 142
n-R5s143 8 123611715 to 123611833 118 - rRNA gene nuclear encoded rRNA 5S 143
n-R5s144 8 123613414 to 123613532 118 - rRNA gene nuclear encoded rRNA 5S 144
Gm25212 8 123615099 to 123615217 118 - rRNA gene predicted gene, 25212
n-R5s146 8 123616810 to 123616928 118 - rRNA gene nuclear encoded rRNA 5S 146
Gm22291 8 123618536 to 123618654 118 - rRNA gene predicted gene, 22291
Gm23284 8 123620241 to 123620359 118 - rRNA gene predicted gene, 23284
n-R5s149 8 123621928 to 123622046 118 - rRNA gene nuclear encoded rRNA 5S 149
Gm23647 8 123623637 to 123623745 108 - rRNA gene predicted gene, 23647
Cpgi21255 8 123628858 to 123629449 591 CpG island CpG island 21255
Gm19600 8 123631028 to 123644623 13595 + lncRNA gene predicted gene, 19600
Tssr79979 8 123631214 to 123631218 4 + TSS region transcription start site region 79979
Gm35930 8 123648292 to 123651835 3543 + lncRNA gene predicted gene, 35930
Tssr79980 8 123649740 to 123649777 37 + TSS region transcription start site region 79980
Gm35874 8 123651026 to 123652736 1710 - lncRNA gene predicted gene, 35874
Cpgi21256 8 123653226 to 123654618 1392 CpG island CpG island 21256
Tssr79981 8 123653791 to 123653805 14 + TSS region transcription start site region 79981
Tssr79982 8 123653807 to 123653818 11 + TSS region transcription start site region 79982
Tssr79983 8 123653823 to 123653834 11 + TSS region transcription start site region 79983
Tssr79984 8 123653841 to 123653877 36 + TSS region transcription start site region 79984
Tssr79985 8 123653903 to 123653908 5 + TSS region transcription start site region 79985
Rhou 8 123653929 to 123663880 9951 + protein coding gene ras homolog family member U
Tssr83373 8 123655323 to 123655324 1 - TSS region transcription start site region 83373
Tssr83374 8 123655565 to 123655578 13 - TSS region transcription start site region 83374
D8Ski14 8 123672380 to 123672583 203 DNA segment DNA segment, Chr 8, Sloan-Kettering Institute 14
Gm35995 8 123694559 to 123696771 2212 - lncRNA gene predicted gene, 35995
Gm39277 8 123709782 to 123712730 2948 + lncRNA gene predicted gene, 39277
Gm36059 8 123716231 to 123718446 2215 - lncRNA gene predicted gene, 36059
Gm39278 8 123724444 to 123725690 1246 - lncRNA gene predicted gene, 39278
Gm45781 8 123727772 to 123735142 7370 - lincRNA gene predicted gene 45781
6030466F02Rik 8 123733958 to 123739941 5983 + lincRNA gene RIKEN cDNA 6030466F02 gene
Tssr79986 8 123738434 to 123738437 3 + TSS region transcription start site region 79986
4732419C18Rik 8 123744631 to 123754726 10095 - lincRNA gene RIKEN cDNA 4732419C18 gene
Tssr83375 8 123751090 to 123751093 3 - TSS region transcription start site region 83375
Tssr83376 8 123754138 to 123754160 22 - TSS region transcription start site region 83376
Tssr79987 8 123754332 to 123754360 28 + TSS region transcription start site region 79987
Gm45866 8 123754370 to 123767721 13351 + lincRNA gene predicted gene 45866
D8Mit277 8 123756975 to 123757075 100 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 277
Gm45865 8 123767551 to 123768495 944 + unclassified gene predicted gene 45865
Gm36188 8 123773770 to 123791079 17309 - lncRNA gene predicted gene, 36188
D8Mit148 8 123778841 to 123779078 237 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 148
Cpgi21257 8 123787584 to 123787787 203 CpG island CpG island 21257
Tssr83377 8 123793918 to 123793922 4 - TSS region transcription start site region 83377
D8Mit13 8 123797844 to 123797941 97 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 13
Cpgi21258 8 123805386 to 123806752 1366 CpG island CpG island 21258
Tssr79988 8 123805848 to 123805865 17 + TSS region transcription start site region 79988
Tssr79989 8 123805886 to 123805895 9 + TSS region transcription start site region 79989
Tssr79990 8 123805960 to 123805990 30 + TSS region transcription start site region 79990
Rab4a 8 123805985 to 123835287 29302 + protein coding gene RAB4A, member RAS oncogene family
Tssr79991 8 123805992 to 123806037 45 + TSS region transcription start site region 79991
Tssr79992 8 123806042 to 123806063 21 + TSS region transcription start site region 79992
Cpgi21259 8 123807030 to 123807323 293 CpG island CpG island 21259
Cpgi21260 8 123816835 to 123817016 181 CpG island CpG island 21260
2810455O05Rik 8 123838553 to 123840785 2232 - lincRNA gene RIKEN cDNA 2810455O05 gene
Ccsap 8 123840844 to 123860209 19365 - protein coding gene centriole, cilia and spindle associated protein
Tssr79993 8 123853791 to 123853794 3 + TSS region transcription start site region 79993
Gm4342 8 123853829 to 123854195 366 + pseudogene predicted gene 4342
Cpgi21261 8 123858614 to 123860197 1583 CpG island CpG island 21261
Tssr83378 8 123858871 to 123858891 20 - TSS region transcription start site region 83378
Tssr83379 8 123859398 to 123859415 17 - TSS region transcription start site region 83379
Tssr83380 8 123859423 to 123859521 98 - TSS region transcription start site region 83380
Gm9901 8 123859448 to 123860498 1050 + lncRNA gene predicted gene 9901
Tssr83381 8 123859925 to 123859955 30 - TSS region transcription start site region 83381
Tssr83382 8 123859958 to 123859992 34 - TSS region transcription start site region 83382
Gm36896 8 123862785 to 123864541 1756 - lncRNA gene predicted gene, 36896
Tssr83383 8 123883081 to 123883112 31 - TSS region transcription start site region 83383
Acta1 8 123891769 to 123894751 2982 - protein coding gene actin, alpha 1, skeletal muscle
Cpgi21262 8 123891773 to 123893155 1382 CpG island CpG island 21262
Tssr2730 8 123891791 to 123891799 8 - TSS region transcription start site region 2730
Tssr83384 8 123891840 to 123891859 19 - TSS region transcription start site region 83384
Tssr83385 8 123891863 to 123891897 34 - TSS region transcription start site region 83385
Tssr83386 8 123891905 to 123891918 13 - TSS region transcription start site region 83386
Tssr83387 8 123891924 to 123891944 20 - TSS region transcription start site region 83387
Tssr79994 8 123891926 to 123891939 13 + TSS region transcription start site region 79994
Tssr79995 8 123892043 to 123892051 8 + TSS region transcription start site region 79995
Tssr83388 8 123892143 to 123892160 17 - TSS region transcription start site region 83388
Tssr83389 8 123892261 to 123892270 9 - TSS region transcription start site region 83389
Tssr83390 8 123892296 to 123892314 18 - TSS region transcription start site region 83390
Tssr79996 8 123892306 to 123892382 76 + TSS region transcription start site region 79996
Tssr83391 8 123892388 to 123892399 11 - TSS region transcription start site region 83391
Tssr83392 8 123892600 to 123892616 16 - TSS region transcription start site region 83392
Tssr83393 8 123892626 to 123892744 118 - TSS region transcription start site region 83393
Tssr79997 8 123892653 to 123892681 28 + TSS region transcription start site region 79997
Tssr79998 8 123892869 to 123892884 15 + TSS region transcription start site region 79998
Tssr83394 8 123892888 to 123892904 16 - TSS region transcription start site region 83394
Tssr83395 8 123892922 to 123892947 25 - TSS region transcription start site region 83395
Tssr79999 8 123892940 to 123892961 21 + TSS region transcription start site region 79999
Tssr83396 8 123892956 to 123893003 47 - TSS region transcription start site region 83396
Tssr83397 8 123893011 to 123893027 16 - TSS region transcription start site region 83397
Tssr83398 8 123893170 to 123893184 14 - TSS region transcription start site region 83398
Tssr83399 8 123893203 to 123893229 26 - TSS region transcription start site region 83399
Tssr80000 8 123893224 to 123893247 23 + TSS region transcription start site region 80000
Tssr83400 8 123893238 to 123893249 11 - TSS region transcription start site region 83400
Tssr83401 8 123893257 to 123893279 22 - TSS region transcription start site region 83401
Tssr80001 8 123893261 to 123893275 14 + TSS region transcription start site region 80001
Tssr83402 8 123893281 to 123893315 34 - TSS region transcription start site region 83402
Tssr83403 8 123893442 to 123893453 11 - TSS region transcription start site region 83403
Tssr83404 8 123893459 to 123893475 16 - TSS region transcription start site region 83404
Tssr83405 8 123893596 to 123893628 32 - TSS region transcription start site region 83405
Tssr80002 8 123893623 to 123893661 38 + TSS region transcription start site region 80002
Tssr83406 8 123893635 to 123893644 9 - TSS region transcription start site region 83406
Tssr83407 8 123893707 to 123893717 10 - TSS region transcription start site region 83407
Tssr83408 8 123894744 to 123894760 16 - TSS region transcription start site region 83408
Gm29773 8 123894896 to 123899136 4240 + antisense lncRNA gene predicted gene, 29773
D8Mit121 8 123895364 to 123895615 251 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 121
W3q5 8 123895615 to 71287817 -52607798 QTL weight 3 weeks QTL 5
Orq1 8 123895615 to 71287817 -52607798 QTL ovulation rate QTL 1
Tssr83409 8 123895747 to 123895766 19 - TSS region transcription start site region 83409
Tssr80003 8 123895853 to 123895862 9 + TSS region transcription start site region 80003
Tssr80004 8 123895937 to 123895948 11 + TSS region transcription start site region 80004
Tssr80005 8 123896197 to 123896220 23 + TSS region transcription start site region 80005
Tssr80006 8 123896234 to 123896276 42 + TSS region transcription start site region 80006
Nup133 8 123897123 to 123949265 52142 - protein coding gene nucleoporin 133
Tssr83410 8 123925865 to 123925874 9 - TSS region transcription start site region 83410
Tssr83411 8 123925891 to 123925913 22 - TSS region transcription start site region 83411
Tssr83412 8 123925929 to 123925940 11 - TSS region transcription start site region 83412
Tssr83413 8 123931005 to 123931012 7 - TSS region transcription start site region 83413
Cpgi21263 8 123948742 to 123949870 1128 CpG island CpG island 21263
Gm45890 8 123948790 to 123958935 10145 + antisense lncRNA gene predicted gene 45890
Tssr83414 8 123949201 to 123949287 86 - TSS region transcription start site region 83414
Tssr80007 8 123949410 to 123949437 27 + TSS region transcription start site region 80007
Tssr80008 8 123949446 to 123949465 19 + TSS region transcription start site region 80008
Abcb10 8 123952459 to 123983122 30663 - protein coding gene ATP-binding cassette, sub-family B (MDR/TAP), member 10
Tssr83415 8 123952868 to 123952874 6 - TSS region transcription start site region 83415
Tssr83416 8 123953750 to 123953753 3 - TSS region transcription start site region 83416
Tssr83417 8 123953770 to 123953776 6 - TSS region transcription start site region 83417
Tssr80009 8 123954010 to 123954041 31 + TSS region transcription start site region 80009
Tssr83418 8 123955769 to 123955773 4 - TSS region transcription start site region 83418
Tssr83419 8 123960191 to 123960211 20 - TSS region transcription start site region 83419
Tssr80010 8 123979296 to 123979302 6 + TSS region transcription start site region 80010
Cpgi21264 8 123982242 to 123983446 1204 CpG island CpG island 21264
Tssr83420 8 123982807 to 123982880 73 - TSS region transcription start site region 83420
Tssr80011 8 123983021 to 123983033 12 + TSS region transcription start site region 80011
Tssr83421 8 123983120 to 123983152 32 - TSS region transcription start site region 83421
Taf5l 8 123996310 to 124021309 24999 - protein coding gene TATA-box binding protein associated factor 5 like
Gm17827 8 124005305 to 124006046 741 + pseudogene predicted gene, 17827
Cpgi21265 8 124020467 to 124021846 1379 CpG island CpG island 21265
Tssr83422 8 124020934 to 124020955 21 - TSS region transcription start site region 83422
Tssr83423 8 124021043 to 124021106 63 - TSS region transcription start site region 83423
Tssr80012 8 124021155 to 124021201 46 + TSS region transcription start site region 80012
Tssr83424 8 124021359 to 124021445 86 - TSS region transcription start site region 83424
Tssr80013 8 124021452 to 124021515 63 + TSS region transcription start site region 80013
Urb2 8 124021508 to 124048505 26997 + protein coding gene URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
Tssr80014 8 124021519 to 124021530 11 + TSS region transcription start site region 80014
Tssr80015 8 124021568 to 124021579 11 + TSS region transcription start site region 80015
Mir1967 8 124022641 to 124022722 81 + miRNA gene microRNA 1967
Gm45732 8 124025072 to 124048412 23340 - antisense lncRNA gene predicted gene 45732
Tssr80016 8 124047145 to 124047162 17 + TSS region transcription start site region 80016
Tssr80017 8 124047607 to 124047615 8 + TSS region transcription start site region 80017
Gm29897 8 124049462 to 124073598 24136 + lncRNA gene predicted gene, 29897
Tssr80018 8 124066777 to 124066788 11 + TSS region transcription start site region 80018
Tssr80019 8 124066789 to 124066796 7 + TSS region transcription start site region 80019
Tssr80020 8 124067132 to 124067139 7 + TSS region transcription start site region 80020
D8Mit49 8 124070940 to 124071089 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 49