Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:123376214-123886218

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182 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tcf25 8 123373753 to 123403835 30082 + protein coding gene transcription factor 25 (basic helix-loop-helix)
Tssr79947 8 123381436 to 123381460 24 + TSS region transcription start site region 79947
Tssr79948 8 123381489 to 123381502 13 + TSS region transcription start site region 79948
Tssr79949 8 123383375 to 123383400 25 + TSS region transcription start site region 79949
Tssr79950 8 123397762 to 123397775 13 + TSS region transcription start site region 79950
Tssr79951 8 123397776 to 123397787 11 + TSS region transcription start site region 79951
Tssr79952 8 123397789 to 123397825 36 + TSS region transcription start site region 79952
Tssr79953 8 123397854 to 123397874 20 + TSS region transcription start site region 79953
Tssr79954 8 123397892 to 123397915 23 + TSS region transcription start site region 79954
Tssr79955 8 123397921 to 123397930 9 + TSS region transcription start site region 79955
Tssr79956 8 123403539 to 123403576 37 + TSS region transcription start site region 79956
Tssr79957 8 123407093 to 123407114 21 + TSS region transcription start site region 79957
Mc1r 8 123407107 to 123410744 3637 + protein coding gene melanocortin 1 receptor
Gm38092 8 123408100 to 123408752 652 - unclassified gene predicted gene, 38092
Cpgi21250 8 123411043 to 123412012 969 CpG island CpG island 21250
Tssr79958 8 123411544 to 123411562 18 + TSS region transcription start site region 79958
Tubb3 8 123411564 to 123422010 10446 + protein coding gene tubulin, beta 3 class III
Tssr2727 8 123418085 to 123418092 7 + TSS region transcription start site region 2727
Tssr79959 8 123418095 to 123418114 19 + TSS region transcription start site region 79959
Tssr79960 8 123418145 to 123418156 11 + TSS region transcription start site region 79960
Tssr79961 8 123420629 to 123420643 14 + TSS region transcription start site region 79961
Tssr79962 8 123420724 to 123420763 39 + TSS region transcription start site region 79962
Tssr79963 8 123420794 to 123420840 46 + TSS region transcription start site region 79963
Tssr79964 8 123420865 to 123420879 14 + TSS region transcription start site region 79964
Mela 8 123425872 to 123434262 8390 pseudogene melanoma antigen
Tssr83353 8 123426737 to 123426739 2 - TSS region transcription start site region 83353
Tssr2728 8 123427473 to 123427480 7 - TSS region transcription start site region 2728
Tssr83354 8 123427558 to 123427566 8 - TSS region transcription start site region 83354
Tssr83355 8 123427645 to 123427659 14 - TSS region transcription start site region 83355
Tssr83356 8 123427722 to 123427729 7 - TSS region transcription start site region 83356
Tssr83357 8 123427837 to 123427848 11 - TSS region transcription start site region 83357
Tssr83358 8 123428102 to 123428112 10 - TSS region transcription start site region 83358
Tssr79965 8 123428410 to 123428420 10 + TSS region transcription start site region 79965
Tssr83359 8 123428965 to 123428972 7 - TSS region transcription start site region 83359
Tssr83360 8 123429072 to 123429081 9 - TSS region transcription start site region 83360
Tssr83361 8 123429446 to 123429449 3 - TSS region transcription start site region 83361
Tssr83362 8 123429595 to 123429599 4 - TSS region transcription start site region 83362
Tssr83363 8 123432279 to 123432289 10 - TSS region transcription start site region 83363
Tssr83364 8 123432352 to 123432355 3 - TSS region transcription start site region 83364
Tssr83365 8 123432432 to 123432439 7 - TSS region transcription start site region 83365
Tssr83366 8 123432553 to 123432562 9 - TSS region transcription start site region 83366
Tssr83367 8 123432613 to 123432619 6 - TSS region transcription start site region 83367
Tssr83368 8 123432626 to 123432633 7 - TSS region transcription start site region 83368
Cpgi21251 8 123442841 to 123443551 710 CpG island CpG island 21251
Def8 8 123442956 to 123463899 20943 + protein coding gene differentially expressed in FDCP 8
Tssr79966 8 123442969 to 123443026 57 + TSS region transcription start site region 79966
Tssr79967 8 123443288 to 123443339 51 + TSS region transcription start site region 79967
Tssr2729 8 123443341 to 123443355 14 + TSS region transcription start site region 2729
Tssr79968 8 123447066 to 123447081 15 + TSS region transcription start site region 79968
Tssr79969 8 123452420 to 123452431 11 + TSS region transcription start site region 79969
Tssr79970 8 123452447 to 123452453 6 + TSS region transcription start site region 79970
Tssr79971 8 123454240 to 123454286 46 + TSS region transcription start site region 79971
Tssr79972 8 123454298 to 123454309 11 + TSS region transcription start site region 79972
Gm25428 8 123471384 to 123471497 113 + snoRNA gene predicted gene, 25428
Gm39275 8 123474758 to 123475410 652 - lncRNA gene predicted gene, 39275
Cpgi21252 8 123477160 to 123478514 1354 CpG island CpG island 21252
Tssr79973 8 123477849 to 123477856 7 + TSS region transcription start site region 79973
Tssr79974 8 123477859 to 123477904 45 + TSS region transcription start site region 79974
Afg3l1 8 123477903 to 123503916 26013 + protein coding gene AFG3-like AAA ATPase 1
Tssr79975 8 123477934 to 123477945 11 + TSS region transcription start site region 79975
Tssr79976 8 123478144 to 123478181 37 + TSS region transcription start site region 79976
Tssr79977 8 123492707 to 123492712 5 + TSS region transcription start site region 79977
Dbndd1 8 123504718 to 123515463 10745 - protein coding gene dysbindin (dystrobrevin binding protein 1) domain containing 1
Cpgi21253 8 123514585 to 123515722 1137 CpG island CpG island 21253
Tssr83369 8 123515333 to 123515437 104 - TSS region transcription start site region 83369
Tssr83370 8 123515466 to 123515498 32 - TSS region transcription start site region 83370
1700040B14Rik 8 123518348 to 123518794 446 unclassified gene RIKEN cDNA 1700040B14 gene
Tssr83371 8 123518741 to 123518810 69 - TSS region transcription start site region 83371
Tssr83372 8 123518815 to 123518825 10 - TSS region transcription start site region 83372
Gas8 8 123518834 to 123536650 17816 + protein coding gene growth arrest specific 8
Tssr79978 8 123518843 to 123518928 85 + TSS region transcription start site region 79978
Cpgi21254 8 123518843 to 123519318 475 CpG island CpG island 21254
Gm22314 8 123523260 to 123523540 280 + unclassified non-coding RNA gene predicted gene, 22314
n-R5s100 8 123538786 to 123538904 118 - rRNA gene nuclear encoded rRNA 5S 100
n-R5s101 8 123540493 to 123540611 118 - rRNA gene nuclear encoded rRNA 5S 101
n-R5s102 8 123542178 to 123542296 118 - rRNA gene nuclear encoded rRNA 5S 102
n-R5s103 8 123543873 to 123543991 118 - rRNA gene nuclear encoded rRNA 5S 103
n-R5s104 8 123545578 to 123545696 118 - rRNA gene nuclear encoded rRNA 5S 104
n-R5s105 8 123547265 to 123547383 118 - rRNA gene nuclear encoded rRNA 5S 105
n-R5s106 8 123548956 to 123549074 118 - rRNA gene nuclear encoded rRNA 5S 106
n-R5s107 8 123550667 to 123550785 118 - rRNA gene nuclear encoded rRNA 5S 107
n-R5s108 8 123552364 to 123552482 118 - rRNA gene nuclear encoded rRNA 5S 108
n-R5s109 8 123554060 to 123554178 118 - rRNA gene nuclear encoded rRNA 5S 109
n-R5s110 8 123555763 to 123555881 118 - rRNA gene nuclear encoded rRNA 5S 110
n-R5s111 8 123557490 to 123557608 118 - rRNA gene nuclear encoded rRNA 5S 111
n-R5s112 8 123559201 to 123559319 118 - rRNA gene nuclear encoded rRNA 5S 112
n-R5s113 8 123560888 to 123561006 118 - rRNA gene nuclear encoded rRNA 5S 113
n-R5s114 8 123562595 to 123562713 118 - rRNA gene nuclear encoded rRNA 5S 114
n-R5s115 8 123564286 to 123564404 118 - rRNA gene nuclear encoded rRNA 5S 115
Gm25018 8 123565969 to 123566087 118 - rRNA gene predicted gene, 25018
n-R5s117 8 123567637 to 123567755 118 - rRNA gene nuclear encoded rRNA 5S 117
n-R5s118 8 123569328 to 123569446 118 - rRNA gene nuclear encoded rRNA 5S 118
n-R5s119 8 123571001 to 123571119 118 - rRNA gene nuclear encoded rRNA 5S 119
n-R5s120 8 123572710 to 123572828 118 - rRNA gene nuclear encoded rRNA 5S 120
n-R5s121 8 123574397 to 123574515 118 - rRNA gene nuclear encoded rRNA 5S 121
n-R5s122 8 123576076 to 123576194 118 - rRNA gene nuclear encoded rRNA 5S 122
n-R5s123 8 123577755 to 123577873 118 - rRNA gene nuclear encoded rRNA 5S 123
n-R5s124 8 123579450 to 123579568 118 - rRNA gene nuclear encoded rRNA 5S 124
n-R5s125 8 123581155 to 123581273 118 - rRNA gene nuclear encoded rRNA 5S 125
Gm24312 8 123582850 to 123582968 118 - rRNA gene predicted gene, 24312
n-R5s127 8 123584535 to 123584653 118 - rRNA gene nuclear encoded rRNA 5S 127
n-R5s128 8 123586242 to 123586360 118 - rRNA gene nuclear encoded rRNA 5S 128
n-R5s129 8 123587959 to 123588077 118 - rRNA gene nuclear encoded rRNA 5S 129
n-R5s130 8 123589654 to 123589772 118 - rRNA gene nuclear encoded rRNA 5S 130
n-R5s131 8 123591371 to 123591489 118 - rRNA gene nuclear encoded rRNA 5S 131
Gm26391 8 123593071 to 123593189 118 - rRNA gene predicted gene, 26391
n-R5s133 8 123594754 to 123594872 118 - rRNA gene nuclear encoded rRNA 5S 133
n-R5s134 8 123596457 to 123596575 118 - rRNA gene nuclear encoded rRNA 5S 134
Rn5s 8 123598158 to 123598276 118 - rRNA gene 5S RNA
n-R5s136 8 123599861 to 123599979 118 - rRNA gene nuclear encoded rRNA 5S 136
Rn5s-ps1 8 123601570 to 123601680 110 - pseudogene 5S RNA, pseudogene 1
Gm24089 8 123601572 to 123601680 108 - rRNA gene predicted gene, 24089
n-R5s138 8 123603247 to 123603365 118 - rRNA gene nuclear encoded rRNA 5S 138
n-R5s139 8 123604948 to 123605066 118 - rRNA gene nuclear encoded rRNA 5S 139
Gm22109 8 123606613 to 123606731 118 - rRNA gene predicted gene, 22109
n-R5s141 8 123608320 to 123608438 118 - rRNA gene nuclear encoded rRNA 5S 141
n-R5s142 8 123610017 to 123610135 118 - rRNA gene nuclear encoded rRNA 5S 142
n-R5s143 8 123611715 to 123611833 118 - rRNA gene nuclear encoded rRNA 5S 143
n-R5s144 8 123613414 to 123613532 118 - rRNA gene nuclear encoded rRNA 5S 144
Gm25212 8 123615099 to 123615217 118 - rRNA gene predicted gene, 25212
n-R5s146 8 123616810 to 123616928 118 - rRNA gene nuclear encoded rRNA 5S 146
Gm22291 8 123618536 to 123618654 118 - rRNA gene predicted gene, 22291
Gm23284 8 123620241 to 123620359 118 - rRNA gene predicted gene, 23284
n-R5s149 8 123621928 to 123622046 118 - rRNA gene nuclear encoded rRNA 5S 149
Gm23647 8 123623637 to 123623745 108 - rRNA gene predicted gene, 23647
Cpgi21255 8 123628858 to 123629449 591 CpG island CpG island 21255
Gm19600 8 123631028 to 123644623 13595 + lncRNA gene predicted gene, 19600
Tssr79979 8 123631214 to 123631218 4 + TSS region transcription start site region 79979
Gm35930 8 123648292 to 123651835 3543 + lncRNA gene predicted gene, 35930
Tssr79980 8 123649740 to 123649777 37 + TSS region transcription start site region 79980
Gm35874 8 123651026 to 123652736 1710 - lncRNA gene predicted gene, 35874
Cpgi21256 8 123653226 to 123654618 1392 CpG island CpG island 21256
Tssr79981 8 123653791 to 123653805 14 + TSS region transcription start site region 79981
Tssr79982 8 123653807 to 123653818 11 + TSS region transcription start site region 79982
Tssr79983 8 123653823 to 123653834 11 + TSS region transcription start site region 79983
Tssr79984 8 123653841 to 123653877 36 + TSS region transcription start site region 79984
Tssr79985 8 123653903 to 123653908 5 + TSS region transcription start site region 79985
Rhou 8 123653929 to 123663880 9951 + protein coding gene ras homolog family member U
Tssr83373 8 123655323 to 123655324 1 - TSS region transcription start site region 83373
Tssr83374 8 123655565 to 123655578 13 - TSS region transcription start site region 83374
D8Ski14 8 123672380 to 123672583 203 DNA segment DNA segment, Chr 8, Sloan-Kettering Institute 14
Gm35995 8 123694559 to 123696771 2212 - lncRNA gene predicted gene, 35995
Gm39277 8 123709782 to 123712730 2948 + lncRNA gene predicted gene, 39277
Gm36059 8 123716231 to 123718446 2215 - lncRNA gene predicted gene, 36059
Gm39278 8 123724444 to 123725690 1246 - lncRNA gene predicted gene, 39278
Gm45781 8 123727772 to 123735142 7370 - lincRNA gene predicted gene 45781
6030466F02Rik 8 123733958 to 123739941 5983 + lincRNA gene RIKEN cDNA 6030466F02 gene
Tssr79986 8 123738434 to 123738437 3 + TSS region transcription start site region 79986
4732419C18Rik 8 123744631 to 123754726 10095 - lincRNA gene RIKEN cDNA 4732419C18 gene
Tssr83375 8 123751090 to 123751093 3 - TSS region transcription start site region 83375
Tssr83376 8 123754138 to 123754160 22 - TSS region transcription start site region 83376
Tssr79987 8 123754332 to 123754360 28 + TSS region transcription start site region 79987
Gm45866 8 123754370 to 123767721 13351 + lincRNA gene predicted gene 45866
D8Mit277 8 123756975 to 123757075 100 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 277
Gm45865 8 123767551 to 123768495 944 + unclassified gene predicted gene 45865
Gm36188 8 123773770 to 123791079 17309 - lncRNA gene predicted gene, 36188
D8Mit148 8 123778841 to 123779078 237 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 148
Cpgi21257 8 123787584 to 123787787 203 CpG island CpG island 21257
Tssr83377 8 123793918 to 123793922 4 - TSS region transcription start site region 83377
D8Mit13 8 123797844 to 123797941 97 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 13
Cpgi21258 8 123805386 to 123806752 1366 CpG island CpG island 21258
Tssr79988 8 123805848 to 123805865 17 + TSS region transcription start site region 79988
Tssr79989 8 123805886 to 123805895 9 + TSS region transcription start site region 79989
Tssr79990 8 123805960 to 123805990 30 + TSS region transcription start site region 79990
Rab4a 8 123805985 to 123835287 29302 + protein coding gene RAB4A, member RAS oncogene family
Tssr79991 8 123805992 to 123806037 45 + TSS region transcription start site region 79991
Tssr79992 8 123806042 to 123806063 21 + TSS region transcription start site region 79992
Cpgi21259 8 123807030 to 123807323 293 CpG island CpG island 21259
Cpgi21260 8 123816835 to 123817016 181 CpG island CpG island 21260
2810455O05Rik 8 123838553 to 123840785 2232 - lincRNA gene RIKEN cDNA 2810455O05 gene
Ccsap 8 123840844 to 123860209 19365 - protein coding gene centriole, cilia and spindle associated protein
Tssr79993 8 123853791 to 123853794 3 + TSS region transcription start site region 79993
Gm4342 8 123853829 to 123854195 366 + pseudogene predicted gene 4342
Cpgi21261 8 123858614 to 123860197 1583 CpG island CpG island 21261
Tssr83378 8 123858871 to 123858891 20 - TSS region transcription start site region 83378
Tssr83379 8 123859398 to 123859415 17 - TSS region transcription start site region 83379
Tssr83380 8 123859423 to 123859521 98 - TSS region transcription start site region 83380
Gm9901 8 123859448 to 123860498 1050 + lncRNA gene predicted gene 9901
Tssr83381 8 123859925 to 123859955 30 - TSS region transcription start site region 83381
Tssr83382 8 123859958 to 123859992 34 - TSS region transcription start site region 83382
Gm36896 8 123862785 to 123864541 1756 - lncRNA gene predicted gene, 36896
Tssr83383 8 123883081 to 123883112 31 - TSS region transcription start site region 83383