Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 8:123232742-123432770

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86 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm45842 8 123230799 to 123242160 11361 + lncRNA gene predicted gene 45842
Spata2l 8 123232255 to 123236263 4008 - protein coding gene spermatogenesis associated 2-like
Tssr79933 8 123235064 to 123235072 8 + TSS region transcription start site region 79933
Tssr79934 8 123235086 to 123235096 10 + TSS region transcription start site region 79934
4933417D19Rik 8 123235091 to 123242359 7268 + lncRNA gene RIKEN cDNA 4933417D19 gene
Tssr79935 8 123235105 to 123235117 12 + TSS region transcription start site region 79935
Cpgi21244 8 123235277 to 123236461 1184 CpG island CpG island 21244
Tssr83341 8 123236166 to 123236195 29 - TSS region transcription start site region 83341
Tssr83342 8 123236198 to 123236237 39 - TSS region transcription start site region 83342
Vps9d1 8 123242356 to 123254222 11866 - protein coding gene VPS9 domain containing 1
Cpgi21245 8 123253431 to 123255269 1838 CpG island CpG island 21245
Tssr83343 8 123254086 to 123254123 37 - TSS region transcription start site region 83343
Tssr83344 8 123254147 to 123254168 21 - TSS region transcription start site region 83344
Tssr83345 8 123254169 to 123254197 28 - TSS region transcription start site region 83345
Zfp276 8 123254195 to 123269745 15550 + protein coding gene zinc finger protein (C2H2 type) 276
Tssr79936 8 123254231 to 123254278 47 + TSS region transcription start site region 79936
Tssr79937 8 123254292 to 123254317 25 + TSS region transcription start site region 79937
Tssr2724 8 123254319 to 123254330 11 + TSS region transcription start site region 2724
Fanca 8 123268300 to 123318576 50276 - protein coding gene Fanconi anemia, complementation group A
Tssr83346 8 123278336 to 123278351 15 - TSS region transcription start site region 83346
Tssr79938 8 123280611 to 123280640 29 + TSS region transcription start site region 79938
Tssr79939 8 123280929 to 123280950 21 + TSS region transcription start site region 79939
Tssr2725 8 123280958 to 123280967 9 + TSS region transcription start site region 2725
Tssr79940 8 123280971 to 123280982 11 + TSS region transcription start site region 79940
Tssr83347 8 123284092 to 123284113 21 - TSS region transcription start site region 83347
Tssr83348 8 123284126 to 123284160 34 - TSS region transcription start site region 83348
Tssr83349 8 123284163 to 123284196 33 - TSS region transcription start site region 83349
D8Ertd106e 8 123286211 to 123286417 206 DNA segment DNA segment, Chr 8, ERATO Doi 106, expressed
Tssr79941 8 123292165 to 123292170 5 + TSS region transcription start site region 79941
Tssr79942 8 123310660 to 123310665 5 + TSS region transcription start site region 79942
Cpgi21246 8 123318220 to 123318754 534 CpG island CpG island 21246
Tssr83350 8 123318541 to 123318550 9 - TSS region transcription start site region 83350
Tssr83351 8 123318553 to 123318579 26 - TSS region transcription start site region 83351
Cpgi21247 8 123332282 to 123333593 1311 CpG island CpG island 21247
Tssr79943 8 123332676 to 123332740 64 + TSS region transcription start site region 79943
Spire2 8 123332713 to 123369515 36802 + protein coding gene spire type actin nucleation factor 2
Tssr79944 8 123332742 to 123332770 28 + TSS region transcription start site region 79944
Tssr2726 8 123332855 to 123332869 14 + TSS region transcription start site region 2726
Cpgi21248 8 123353974 to 123354349 375 CpG island CpG island 21248
Cpgi21249 8 123373173 to 123374622 1449 CpG island CpG island 21249
Tcf25 8 123373753 to 123403835 30082 + protein coding gene transcription factor 25 (basic helix-loop-helix)
Tssr79945 8 123373778 to 123373846 68 + TSS region transcription start site region 79945
Tssr79946 8 123373850 to 123373858 8 + TSS region transcription start site region 79946
Tssr83352 8 123374314 to 123374327 13 - TSS region transcription start site region 83352
Tssr79947 8 123381436 to 123381460 24 + TSS region transcription start site region 79947
Tssr79948 8 123381489 to 123381502 13 + TSS region transcription start site region 79948
Tssr79949 8 123383375 to 123383400 25 + TSS region transcription start site region 79949
Tssr79950 8 123397762 to 123397775 13 + TSS region transcription start site region 79950
Tssr79951 8 123397776 to 123397787 11 + TSS region transcription start site region 79951
Tssr79952 8 123397789 to 123397825 36 + TSS region transcription start site region 79952
Tssr79953 8 123397854 to 123397874 20 + TSS region transcription start site region 79953
Tssr79954 8 123397892 to 123397915 23 + TSS region transcription start site region 79954
Tssr79955 8 123397921 to 123397930 9 + TSS region transcription start site region 79955
Tssr79956 8 123403539 to 123403576 37 + TSS region transcription start site region 79956
Tssr79957 8 123407093 to 123407114 21 + TSS region transcription start site region 79957
Mc1r 8 123407107 to 123410744 3637 + protein coding gene melanocortin 1 receptor
Gm38092 8 123408100 to 123408752 652 - unclassified gene predicted gene, 38092
Cpgi21250 8 123411043 to 123412012 969 CpG island CpG island 21250
Tssr79958 8 123411544 to 123411562 18 + TSS region transcription start site region 79958
Tubb3 8 123411553 to 123422015 10462 + protein coding gene tubulin, beta 3 class III
Tssr2727 8 123418085 to 123418092 7 + TSS region transcription start site region 2727
Tssr79959 8 123418095 to 123418114 19 + TSS region transcription start site region 79959
Tssr79960 8 123418145 to 123418156 11 + TSS region transcription start site region 79960
Tssr79961 8 123420629 to 123420643 14 + TSS region transcription start site region 79961
Tssr79962 8 123420724 to 123420763 39 + TSS region transcription start site region 79962
Tssr79963 8 123420794 to 123420840 46 + TSS region transcription start site region 79963
Tssr79964 8 123420865 to 123420879 14 + TSS region transcription start site region 79964
Mela 8 123425872 to 123434262 8390 pseudogene melanoma antigen
Tssr83353 8 123426737 to 123426739 2 - TSS region transcription start site region 83353
Tssr2728 8 123427473 to 123427480 7 - TSS region transcription start site region 2728
Tssr83354 8 123427558 to 123427566 8 - TSS region transcription start site region 83354
Tssr83355 8 123427645 to 123427659 14 - TSS region transcription start site region 83355
Tssr83356 8 123427722 to 123427729 7 - TSS region transcription start site region 83356
Tssr83357 8 123427837 to 123427848 11 - TSS region transcription start site region 83357
Tssr83358 8 123428102 to 123428112 10 - TSS region transcription start site region 83358
Tssr79965 8 123428410 to 123428420 10 + TSS region transcription start site region 79965
Tssr83359 8 123428965 to 123428972 7 - TSS region transcription start site region 83359
Tssr83360 8 123429072 to 123429081 9 - TSS region transcription start site region 83360
Tssr83361 8 123429446 to 123429449 3 - TSS region transcription start site region 83361
Tssr83362 8 123429595 to 123429599 4 - TSS region transcription start site region 83362
Tssr83363 8 123432279 to 123432289 10 - TSS region transcription start site region 83363
Tssr83364 8 123432352 to 123432355 3 - TSS region transcription start site region 83364
Tssr83365 8 123432432 to 123432439 7 - TSS region transcription start site region 83365
Tssr83366 8 123432553 to 123432562 9 - TSS region transcription start site region 83366
Tssr83367 8 123432613 to 123432619 6 - TSS region transcription start site region 83367
Tssr83368 8 123432626 to 123432633 7 - TSS region transcription start site region 83368