Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:123088553-123548579

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spg7 8 123065508 to 123097751 32243 + protein coding gene SPG7, paraplegin matrix AAA peptidase subunit
Cpgi21239 8 123102134 to 123103602 1468 CpG island CpG island 21239
Tssr83335 8 123102260 to 123102280 20 - TSS region transcription start site region 83335
Tssr79911 8 123102344 to 123102351 7 + TSS region transcription start site region 79911
Rpl13 8 123102350 to 123105244 2894 + protein coding gene ribosomal protein L13
Tssr79912 8 123102359 to 123102420 61 + TSS region transcription start site region 79912
Tssr79913 8 123102431 to 123102454 23 + TSS region transcription start site region 79913
Snord68 8 123103058 to 123103105 47 + snoRNA gene small nucleolar RNA, C/D box 68
Mir7079 8 123104975 to 123105043 68 + miRNA gene microRNA 7079
Cpgi21240 8 123116839 to 123118246 1407 CpG island CpG island 21240
Tssr79914 8 123117354 to 123117379 25 + TSS region transcription start site region 79914
Cpne7 8 123117374 to 123135182 17808 + protein coding gene copine VII
Tssr79915 8 123117387 to 123117404 17 + TSS region transcription start site region 79915
Tssr79916 8 123117447 to 123117476 29 + TSS region transcription start site region 79916
Cpgi21241 8 123126269 to 123126673 404 CpG island CpG island 21241
Mir7080 8 123130106 to 123130172 66 + miRNA gene microRNA 7080
Sult5a1 8 123142843 to 123158913 16070 - protein coding gene sulfotransferase family 5A, member 1
Tssr83336 8 123158229 to 123158264 35 - TSS region transcription start site region 83336
Tssr83337 8 123158268 to 123158295 27 - TSS region transcription start site region 83337
Tssr83338 8 123158307 to 123158325 18 - TSS region transcription start site region 83338
Gm42052 8 123169029 to 123171047 2018 + protein coding gene predicted gene, 42052
Gm4316 8 123172557 to 123178767 6210 + lincRNA gene predicted gene 4316
Tssr79917 8 123186108 to 123186117 9 + TSS region transcription start site region 79917
Tssr79918 8 123186163 to 123186174 11 + TSS region transcription start site region 79918
Tssr79919 8 123186237 to 123186262 25 + TSS region transcription start site region 79919
Dpep1 8 123186242 to 123201812 15570 + protein coding gene dipeptidase 1
Tssr79920 8 123186271 to 123186282 11 + TSS region transcription start site region 79920
Tssr79921 8 123186317 to 123186397 80 + TSS region transcription start site region 79921
Tssr79922 8 123186405 to 123186416 11 + TSS region transcription start site region 79922
Tssr2723 8 123193575 to 123193579 4 + TSS region transcription start site region 2723
Tssr79923 8 123193943 to 123193989 46 + TSS region transcription start site region 79923
Tssr79924 8 123194000 to 123194012 12 + TSS region transcription start site region 79924
Tssr79925 8 123194014 to 123194025 11 + TSS region transcription start site region 79925
Chmp1a 8 123204264 to 123212763 8499 - protein coding gene charged multivesicular body protein 1A
Tssr79926 8 123206539 to 123206540 1 + TSS region transcription start site region 79926
Rps12-ps9 8 123206623 to 123207021 398 + pseudogene ribosomal protein S12, pseudogene 9
Cpgi21242 8 123212245 to 123213407 1162 CpG island CpG island 21242
Tssr83339 8 123212742 to 123212779 37 - TSS region transcription start site region 83339
Tssr83340 8 123212780 to 123212789 9 - TSS region transcription start site region 83340
Tssr79927 8 123212826 to 123212848 22 + TSS region transcription start site region 79927
Spata33 8 123212832 to 123222046 9214 + protein coding gene spermatogenesis associated 33
Tssr79928 8 123212851 to 123212856 5 + TSS region transcription start site region 79928
Tssr79929 8 123212857 to 123212911 54 + TSS region transcription start site region 79929
Tssr79930 8 123212913 to 123212924 11 + TSS region transcription start site region 79930
Tssr79931 8 123213014 to 123213032 18 + TSS region transcription start site region 79931
Cpgi21243 8 123224428 to 123225427 999 CpG island CpG island 21243
Tssr79932 8 123224833 to 123224875 42 + TSS region transcription start site region 79932
Cdk10 8 123224842 to 123232250 7408 + protein coding gene cyclin-dependent kinase 10
Gm45842 8 123230799 to 123242160 11361 + antisense lncRNA gene predicted gene 45842
Spata2l 8 123232255 to 123236247 3992 - protein coding gene spermatogenesis associated 2-like
Tssr79933 8 123235064 to 123235072 8 + TSS region transcription start site region 79933
Tssr79934 8 123235086 to 123235096 10 + TSS region transcription start site region 79934
4933417D19Rik 8 123235091 to 123242359 7268 + antisense lncRNA gene RIKEN cDNA 4933417D19 gene
Tssr79935 8 123235105 to 123235117 12 + TSS region transcription start site region 79935
Cpgi21244 8 123235277 to 123236461 1184 CpG island CpG island 21244
Tssr83341 8 123236166 to 123236195 29 - TSS region transcription start site region 83341
Tssr83342 8 123236198 to 123236237 39 - TSS region transcription start site region 83342
Vps9d1 8 123242356 to 123254222 11866 - protein coding gene VPS9 domain containing 1
Cpgi21245 8 123253431 to 123255269 1838 CpG island CpG island 21245
Tssr83343 8 123254086 to 123254123 37 - TSS region transcription start site region 83343
Tssr83344 8 123254147 to 123254168 21 - TSS region transcription start site region 83344
Tssr83345 8 123254169 to 123254197 28 - TSS region transcription start site region 83345
Zfp276 8 123254195 to 123269745 15550 + protein coding gene zinc finger protein (C2H2 type) 276
Tssr79936 8 123254231 to 123254278 47 + TSS region transcription start site region 79936
Tssr79937 8 123254292 to 123254317 25 + TSS region transcription start site region 79937
Tssr2724 8 123254319 to 123254330 11 + TSS region transcription start site region 2724
Fanca 8 123268300 to 123318576 50276 - protein coding gene Fanconi anemia, complementation group A
Tssr83346 8 123278336 to 123278351 15 - TSS region transcription start site region 83346
Tssr79938 8 123280611 to 123280640 29 + TSS region transcription start site region 79938
Tssr79939 8 123280929 to 123280950 21 + TSS region transcription start site region 79939
Tssr2725 8 123280958 to 123280967 9 + TSS region transcription start site region 2725
Tssr79940 8 123280971 to 123280982 11 + TSS region transcription start site region 79940
Tssr83347 8 123284092 to 123284113 21 - TSS region transcription start site region 83347
Tssr83348 8 123284126 to 123284160 34 - TSS region transcription start site region 83348
Tssr83349 8 123284163 to 123284196 33 - TSS region transcription start site region 83349
D8Ertd106e 8 123286211 to 123286417 206 DNA segment DNA segment, Chr 8, ERATO Doi 106, expressed
Tssr79941 8 123292165 to 123292170 5 + TSS region transcription start site region 79941
Tssr79942 8 123310660 to 123310665 5 + TSS region transcription start site region 79942
Cpgi21246 8 123318220 to 123318754 534 CpG island CpG island 21246
Tssr83350 8 123318541 to 123318550 9 - TSS region transcription start site region 83350
Tssr83351 8 123318553 to 123318579 26 - TSS region transcription start site region 83351
Cpgi21247 8 123332282 to 123333593 1311 CpG island CpG island 21247
Tssr79943 8 123332676 to 123332740 64 + TSS region transcription start site region 79943
Spire2 8 123332713 to 123369515 36802 + protein coding gene spire type actin nucleation factor 2
Tssr79944 8 123332742 to 123332770 28 + TSS region transcription start site region 79944
Tssr2726 8 123332855 to 123332869 14 + TSS region transcription start site region 2726
Cpgi21248 8 123353974 to 123354349 375 CpG island CpG island 21248
Cpgi21249 8 123373173 to 123374622 1449 CpG island CpG island 21249
Tcf25 8 123373753 to 123403835 30082 + protein coding gene transcription factor 25 (basic helix-loop-helix)
Tssr79945 8 123373778 to 123373846 68 + TSS region transcription start site region 79945
Tssr79946 8 123373850 to 123373858 8 + TSS region transcription start site region 79946
Tssr83352 8 123374314 to 123374327 13 - TSS region transcription start site region 83352
Tssr79947 8 123381436 to 123381460 24 + TSS region transcription start site region 79947
Tssr79948 8 123381489 to 123381502 13 + TSS region transcription start site region 79948
Tssr79949 8 123383375 to 123383400 25 + TSS region transcription start site region 79949
Tssr79950 8 123397762 to 123397775 13 + TSS region transcription start site region 79950
Tssr79951 8 123397776 to 123397787 11 + TSS region transcription start site region 79951
Tssr79952 8 123397789 to 123397825 36 + TSS region transcription start site region 79952
Tssr79953 8 123397854 to 123397874 20 + TSS region transcription start site region 79953
Tssr79954 8 123397892 to 123397915 23 + TSS region transcription start site region 79954
Tssr79955 8 123397921 to 123397930 9 + TSS region transcription start site region 79955
Tssr79956 8 123403539 to 123403576 37 + TSS region transcription start site region 79956
Tssr79957 8 123407093 to 123407114 21 + TSS region transcription start site region 79957
Mc1r 8 123407107 to 123410744 3637 + protein coding gene melanocortin 1 receptor
Gm38092 8 123408100 to 123408752 652 - unclassified gene predicted gene, 38092
Cpgi21250 8 123411043 to 123412012 969 CpG island CpG island 21250
Tssr79958 8 123411544 to 123411562 18 + TSS region transcription start site region 79958
Tubb3 8 123411564 to 123422010 10446 + protein coding gene tubulin, beta 3 class III
Tssr2727 8 123418085 to 123418092 7 + TSS region transcription start site region 2727
Tssr79959 8 123418095 to 123418114 19 + TSS region transcription start site region 79959
Tssr79960 8 123418145 to 123418156 11 + TSS region transcription start site region 79960
Tssr79961 8 123420629 to 123420643 14 + TSS region transcription start site region 79961
Tssr79962 8 123420724 to 123420763 39 + TSS region transcription start site region 79962
Tssr79963 8 123420794 to 123420840 46 + TSS region transcription start site region 79963
Tssr79964 8 123420865 to 123420879 14 + TSS region transcription start site region 79964
Mela 8 123425872 to 123434262 8390 pseudogene melanoma antigen
Tssr83353 8 123426737 to 123426739 2 - TSS region transcription start site region 83353
Tssr2728 8 123427473 to 123427480 7 - TSS region transcription start site region 2728
Tssr83354 8 123427558 to 123427566 8 - TSS region transcription start site region 83354
Tssr83355 8 123427645 to 123427659 14 - TSS region transcription start site region 83355
Tssr83356 8 123427722 to 123427729 7 - TSS region transcription start site region 83356
Tssr83357 8 123427837 to 123427848 11 - TSS region transcription start site region 83357
Tssr83358 8 123428102 to 123428112 10 - TSS region transcription start site region 83358
Tssr79965 8 123428410 to 123428420 10 + TSS region transcription start site region 79965
Tssr83359 8 123428965 to 123428972 7 - TSS region transcription start site region 83359
Tssr83360 8 123429072 to 123429081 9 - TSS region transcription start site region 83360
Tssr83361 8 123429446 to 123429449 3 - TSS region transcription start site region 83361
Tssr83362 8 123429595 to 123429599 4 - TSS region transcription start site region 83362
Tssr83363 8 123432279 to 123432289 10 - TSS region transcription start site region 83363
Tssr83364 8 123432352 to 123432355 3 - TSS region transcription start site region 83364
Tssr83365 8 123432432 to 123432439 7 - TSS region transcription start site region 83365
Tssr83366 8 123432553 to 123432562 9 - TSS region transcription start site region 83366
Tssr83367 8 123432613 to 123432619 6 - TSS region transcription start site region 83367
Tssr83368 8 123432626 to 123432633 7 - TSS region transcription start site region 83368
Cpgi21251 8 123442841 to 123443551 710 CpG island CpG island 21251
Def8 8 123442956 to 123463899 20943 + protein coding gene differentially expressed in FDCP 8
Tssr79966 8 123442969 to 123443026 57 + TSS region transcription start site region 79966
Tssr79967 8 123443288 to 123443339 51 + TSS region transcription start site region 79967
Tssr2729 8 123443341 to 123443355 14 + TSS region transcription start site region 2729
Tssr79968 8 123447066 to 123447081 15 + TSS region transcription start site region 79968
Tssr79969 8 123452420 to 123452431 11 + TSS region transcription start site region 79969
Tssr79970 8 123452447 to 123452453 6 + TSS region transcription start site region 79970
Tssr79971 8 123454240 to 123454286 46 + TSS region transcription start site region 79971
Tssr79972 8 123454298 to 123454309 11 + TSS region transcription start site region 79972
Gm25428 8 123471384 to 123471497 113 + snoRNA gene predicted gene, 25428
Gm39275 8 123474758 to 123475410 652 - lncRNA gene predicted gene, 39275
Cpgi21252 8 123477160 to 123478514 1354 CpG island CpG island 21252
Tssr79973 8 123477849 to 123477856 7 + TSS region transcription start site region 79973
Tssr79974 8 123477859 to 123477904 45 + TSS region transcription start site region 79974
Afg3l1 8 123477903 to 123503916 26013 + protein coding gene AFG3-like AAA ATPase 1
Tssr79975 8 123477934 to 123477945 11 + TSS region transcription start site region 79975
Tssr79976 8 123478144 to 123478181 37 + TSS region transcription start site region 79976
Tssr79977 8 123492707 to 123492712 5 + TSS region transcription start site region 79977
Dbndd1 8 123504718 to 123515463 10745 - protein coding gene dysbindin (dystrobrevin binding protein 1) domain containing 1
Cpgi21253 8 123514585 to 123515722 1137 CpG island CpG island 21253
Tssr83369 8 123515333 to 123515437 104 - TSS region transcription start site region 83369
Tssr83370 8 123515466 to 123515498 32 - TSS region transcription start site region 83370
1700040B14Rik 8 123518348 to 123518794 446 unclassified gene RIKEN cDNA 1700040B14 gene
Tssr83371 8 123518741 to 123518810 69 - TSS region transcription start site region 83371
Tssr83372 8 123518815 to 123518825 10 - TSS region transcription start site region 83372
Gas8 8 123518834 to 123536650 17816 + protein coding gene growth arrest specific 8
Cpgi21254 8 123518843 to 123519318 475 CpG island CpG island 21254
Tssr79978 8 123518843 to 123518928 85 + TSS region transcription start site region 79978
Gm22314 8 123523260 to 123523540 280 + unclassified non-coding RNA gene predicted gene, 22314
n-R5s100 8 123538786 to 123538904 118 - rRNA gene nuclear encoded rRNA 5S 100
n-R5s101 8 123540493 to 123540611 118 - rRNA gene nuclear encoded rRNA 5S 101
n-R5s102 8 123542178 to 123542296 118 - rRNA gene nuclear encoded rRNA 5S 102
n-R5s103 8 123543873 to 123543991 118 - rRNA gene nuclear encoded rRNA 5S 103
n-R5s104 8 123545578 to 123545696 118 - rRNA gene nuclear encoded rRNA 5S 104
n-R5s105 8 123547265 to 123547383 118 - rRNA gene nuclear encoded rRNA 5S 105