Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:123017447-123217476

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ankrd11 8 122883822 to 123042277 158455 - protein coding gene ankyrin repeat domain 11
Tssr83326 8 123023625 to 123023629 4 - TSS region transcription start site region 83326
Tssr83327 8 123025432 to 123025434 2 - TSS region transcription start site region 83327
Tssr83328 8 123028986 to 123028990 4 - TSS region transcription start site region 83328
Tssr83329 8 123032380 to 123032384 4 - TSS region transcription start site region 83329
Tssr83330 8 123032750 to 123032751 1 - TSS region transcription start site region 83330
Cpgi21237 8 123040992 to 123043205 2213 CpG island CpG island 21237
Tssr83331 8 123041046 to 123041053 7 - TSS region transcription start site region 83331
Tssr79905 8 123041373 to 123041389 16 + TSS region transcription start site region 79905
Tssr2722 8 123042090 to 123042095 5 - TSS region transcription start site region 2722
Tssr83332 8 123042232 to 123042243 11 - TSS region transcription start site region 83332
Tssr83333 8 123042245 to 123042270 25 - TSS region transcription start site region 83333
Tssr83334 8 123042271 to 123042302 31 - TSS region transcription start site region 83334
Tssr79906 8 123042414 to 123042436 22 + TSS region transcription start site region 79906
Tssr79907 8 123042559 to 123042654 95 + TSS region transcription start site region 79907
2810013P06Rik 8 123042575 to 123044602 2027 + bidirectional promoter lncRNA gene RIKEN cDNA 2810013P06 gene
Tssr79908 8 123042663 to 123042672 9 + TSS region transcription start site region 79908
Tssr79909 8 123062952 to 123062974 22 + TSS region transcription start site region 79909
Gm35677 8 123063475 to 123065229 1754 - lncRNA gene predicted gene, 35677
Cpgi21238 8 123065073 to 123066104 1031 CpG island CpG island 21238
Tssr79910 8 123065490 to 123065529 39 + TSS region transcription start site region 79910
Spg7 8 123065508 to 123097751 32243 + protein coding gene SPG7, paraplegin matrix AAA peptidase subunit
Cpgi21239 8 123102134 to 123103602 1468 CpG island CpG island 21239
Tssr83335 8 123102260 to 123102280 20 - TSS region transcription start site region 83335
Tssr79911 8 123102344 to 123102351 7 + TSS region transcription start site region 79911
Rpl13 8 123102350 to 123105244 2894 + protein coding gene ribosomal protein L13
Tssr79912 8 123102359 to 123102420 61 + TSS region transcription start site region 79912
Tssr79913 8 123102431 to 123102454 23 + TSS region transcription start site region 79913
Snord68 8 123103058 to 123103105 47 + snoRNA gene small nucleolar RNA, C/D box 68
Mir7079 8 123104975 to 123105043 68 + miRNA gene microRNA 7079
Cpgi21240 8 123116839 to 123118246 1407 CpG island CpG island 21240
Tssr79914 8 123117354 to 123117379 25 + TSS region transcription start site region 79914
Cpne7 8 123117374 to 123135182 17808 + protein coding gene copine VII
Tssr79915 8 123117387 to 123117404 17 + TSS region transcription start site region 79915
Tssr79916 8 123117447 to 123117476 29 + TSS region transcription start site region 79916
Cpgi21241 8 123126269 to 123126673 404 CpG island CpG island 21241
Mir7080 8 123130106 to 123130172 66 + miRNA gene microRNA 7080
Sult5a1 8 123142843 to 123158913 16070 - protein coding gene sulfotransferase family 5A, member 1
Tssr83336 8 123158229 to 123158264 35 - TSS region transcription start site region 83336
Tssr83337 8 123158268 to 123158295 27 - TSS region transcription start site region 83337
Tssr83338 8 123158307 to 123158325 18 - TSS region transcription start site region 83338
Gm42052 8 123169029 to 123171047 2018 + protein coding gene predicted gene, 42052
Gm4316 8 123172557 to 123178767 6210 + lincRNA gene predicted gene 4316
Tssr79917 8 123186108 to 123186117 9 + TSS region transcription start site region 79917
Tssr79918 8 123186163 to 123186174 11 + TSS region transcription start site region 79918
Tssr79919 8 123186237 to 123186262 25 + TSS region transcription start site region 79919
Dpep1 8 123186242 to 123201812 15570 + protein coding gene dipeptidase 1
Tssr79920 8 123186271 to 123186282 11 + TSS region transcription start site region 79920
Tssr79921 8 123186317 to 123186397 80 + TSS region transcription start site region 79921
Tssr79922 8 123186405 to 123186416 11 + TSS region transcription start site region 79922
Tssr2723 8 123193575 to 123193579 4 + TSS region transcription start site region 2723
Tssr79923 8 123193943 to 123193989 46 + TSS region transcription start site region 79923
Tssr79924 8 123194000 to 123194012 12 + TSS region transcription start site region 79924
Tssr79925 8 123194014 to 123194025 11 + TSS region transcription start site region 79925
Chmp1a 8 123204264 to 123212763 8499 - protein coding gene charged multivesicular body protein 1A
Tssr79926 8 123206539 to 123206540 1 + TSS region transcription start site region 79926
Rps12-ps9 8 123206623 to 123207021 398 + pseudogene ribosomal protein S12, pseudogene 9
Cpgi21242 8 123212245 to 123213407 1162 CpG island CpG island 21242
Tssr83339 8 123212742 to 123212779 37 - TSS region transcription start site region 83339
Tssr83340 8 123212780 to 123212789 9 - TSS region transcription start site region 83340
Tssr79927 8 123212826 to 123212848 22 + TSS region transcription start site region 79927
Spata33 8 123212832 to 123222046 9214 + protein coding gene spermatogenesis associated 33
Tssr79928 8 123212851 to 123212856 5 + TSS region transcription start site region 79928
Tssr79929 8 123212857 to 123212911 54 + TSS region transcription start site region 79929
Tssr79930 8 123212913 to 123212924 11 + TSS region transcription start site region 79930
Tssr79931 8 123213014 to 123213032 18 + TSS region transcription start site region 79931