Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:122609066-122789119

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Galns 8 122578242 to 122611463 33221 - protein coding gene galactosamine (N-acetyl)-6-sulfate sulfatase
Cpgi21227 8 122610968 to 122612161 1193 CpG island CpG island 21227
Tssr83292 8 122611358 to 122611411 53 - TSS region transcription start site region 83292
Tssr83293 8 122611419 to 122611438 19 - TSS region transcription start site region 83293
Tssr79892 8 122611618 to 122611663 45 + TSS region transcription start site region 79892
Trappc2l 8 122611626 to 122615591 3965 + protein coding gene trafficking protein particle complex 2-like
Tssr79893 8 122613901 to 122613920 19 + TSS region transcription start site region 79893
Pabpn1l 8 122619471 to 122622735 3264 - protein coding gene poly(A)binding protein nuclear 1-like
Mir6396 8 122622265 to 122622375 110 - miRNA gene microRNA 6396
Cbfa2t3 8 122625141 to 122699109 73968 - protein coding gene CBFA2/RUNX1 translocation partner 3
Tssr83294 8 122629938 to 122629942 4 - TSS region transcription start site region 83294
Cpgi21228 8 122638679 to 122639053 374 CpG island CpG island 21228
Cpgi21229 8 122677150 to 122679191 2041 CpG island CpG island 21229
Tssr83295 8 122678130 to 122678182 52 - TSS region transcription start site region 83295
Tssr83296 8 122678522 to 122678572 50 - TSS region transcription start site region 83296
Tssr83297 8 122678653 to 122678669 16 - TSS region transcription start site region 83297
Gm15899 8 122683602 to 122683839 237 - pseudogene predicted gene 15899
Tssr2718 8 122694219 to 122694221 2 + TSS region transcription start site region 2718
Gm10612 8 122697860 to 122700160 2300 + antisense lncRNA gene predicted gene 10612
Tssr83298 8 122699066 to 122699119 53 - TSS region transcription start site region 83298
Tssr83299 8 122699122 to 122699137 15 - TSS region transcription start site region 83299
Tssr83300 8 122699459 to 122699465 6 - TSS region transcription start site region 83300
Cpgi21230 8 122709410 to 122709706 296 CpG island CpG island 21230
Tssr79894 8 122709430 to 122709436 6 + TSS region transcription start site region 79894
Tssr79895 8 122709503 to 122709528 25 + TSS region transcription start site region 79895
C230057M02Rik 8 122724948 to 122752325 27377 - lincRNA gene RIKEN cDNA C230057M02 gene
Cpgi21231 8 122751788 to 122752636 848 CpG island CpG island 21231
Tssr83301 8 122752183 to 122752207 24 - TSS region transcription start site region 83301
Tssr83302 8 122752339 to 122752378 39 - TSS region transcription start site region 83302
A530010L16Rik 8 122760034 to 122762866 2832 - lincRNA gene RIKEN cDNA A530010L16 gene
Cpgi21232 8 122769250 to 122769526 276 CpG island CpG island 21232
Gm39271 8 122774035 to 122775423 1388 - bidirectional promoter lncRNA gene predicted gene, 39271
Cpgi21233 8 122775327 to 122776090 763 CpG island CpG island 21233
Tssr2719 8 122775483 to 122775494 11 + TSS region transcription start site region 2719
Acsf3 8 122775493 to 122817882 42389 + protein coding gene acyl-CoA synthetase family member 3
Tssr79896 8 122775497 to 122775514 17 + TSS region transcription start site region 79896