Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:122604587-123274592

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169 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Galns 8 122578242 to 122611463 33221 - protein coding gene galactosamine (N-acetyl)-6-sulfate sulfatase
Cpgi21227 8 122610968 to 122612161 1193 CpG island CpG island 21227
Tssr83292 8 122611358 to 122611411 53 - TSS region transcription start site region 83292
Tssr83293 8 122611419 to 122611438 19 - TSS region transcription start site region 83293
Tssr79892 8 122611618 to 122611663 45 + TSS region transcription start site region 79892
Trappc2l 8 122611626 to 122615591 3965 + protein coding gene trafficking protein particle complex 2-like
Tssr79893 8 122613901 to 122613920 19 + TSS region transcription start site region 79893
Pabpn1l 8 122619471 to 122622735 3264 - protein coding gene poly(A)binding protein nuclear 1-like
Mir6396 8 122622265 to 122622375 110 - miRNA gene microRNA 6396
Cbfa2t3 8 122625141 to 122699109 73968 - protein coding gene CBFA2/RUNX1 translocation partner 3
Tssr83294 8 122629938 to 122629942 4 - TSS region transcription start site region 83294
Cpgi21228 8 122638679 to 122639053 374 CpG island CpG island 21228
Cpgi21229 8 122677150 to 122679191 2041 CpG island CpG island 21229
Tssr83295 8 122678130 to 122678182 52 - TSS region transcription start site region 83295
Tssr83296 8 122678522 to 122678572 50 - TSS region transcription start site region 83296
Tssr83297 8 122678653 to 122678669 16 - TSS region transcription start site region 83297
Gm15899 8 122683602 to 122683839 237 - pseudogene predicted gene 15899
Tssr2718 8 122694219 to 122694221 2 + TSS region transcription start site region 2718
Gm10612 8 122697860 to 122700160 2300 + antisense lncRNA gene predicted gene 10612
Tssr83298 8 122699066 to 122699119 53 - TSS region transcription start site region 83298
Tssr83299 8 122699122 to 122699137 15 - TSS region transcription start site region 83299
Tssr83300 8 122699459 to 122699465 6 - TSS region transcription start site region 83300
Cpgi21230 8 122709410 to 122709706 296 CpG island CpG island 21230
Tssr79894 8 122709430 to 122709436 6 + TSS region transcription start site region 79894
Tssr79895 8 122709503 to 122709528 25 + TSS region transcription start site region 79895
C230057M02Rik 8 122724948 to 122752325 27377 - lincRNA gene RIKEN cDNA C230057M02 gene
Cpgi21231 8 122751788 to 122752636 848 CpG island CpG island 21231
Tssr83301 8 122752183 to 122752207 24 - TSS region transcription start site region 83301
Tssr83302 8 122752339 to 122752378 39 - TSS region transcription start site region 83302
A530010L16Rik 8 122760034 to 122762866 2832 - lincRNA gene RIKEN cDNA A530010L16 gene
Cpgi21232 8 122769250 to 122769526 276 CpG island CpG island 21232
Gm39271 8 122774035 to 122775423 1388 - bidirectional promoter lncRNA gene predicted gene, 39271
Cpgi21233 8 122775327 to 122776090 763 CpG island CpG island 21233
Tssr2719 8 122775483 to 122775494 11 + TSS region transcription start site region 2719
Acsf3 8 122775493 to 122817882 42389 + protein coding gene acyl-CoA synthetase family member 3
Tssr79896 8 122775497 to 122775514 17 + TSS region transcription start site region 79896
Gm35466 8 122823424 to 122838033 14609 + lncRNA gene predicted gene, 35466
Gm45743 8 122826086 to 122828880 2794 + unclassified gene predicted gene 45743
Gm45893 8 122836551 to 122836797 246 + pseudogene predicted gene 45893
Gm16378 8 122841731 to 122842072 341 + pseudogene predicted gene 16378
Cpgi21234 8 122848269 to 122848556 287 CpG island CpG island 21234
Tssr79897 8 122848367 to 122848400 33 + TSS region transcription start site region 79897
Cdh15 8 122848374 to 122867397 19023 + protein coding gene cadherin 15
Tssr79898 8 122848407 to 122848437 30 + TSS region transcription start site region 79898
Tssr79899 8 122848441 to 122848461 20 + TSS region transcription start site region 79899
Cpgi21235 8 122864717 to 122865427 710 CpG island CpG island 21235
Gm45894 8 122870174 to 122901457 31283 + antisense lncRNA gene predicted gene 45894
Cpgi21236 8 122870370 to 122870938 568 CpG island CpG island 21236
Tssr79900 8 122870569 to 122870600 31 + TSS region transcription start site region 79900
Tssr79901 8 122870606 to 122870622 16 + TSS region transcription start site region 79901
Tssr79902 8 122879274 to 122879281 7 + TSS region transcription start site region 79902
Ankrd11 8 122883822 to 123042277 158455 - protein coding gene ankyrin repeat domain 11
Tssr83303 8 122892832 to 122892854 22 - TSS region transcription start site region 83303
Tssr83304 8 122892995 to 122893026 31 - TSS region transcription start site region 83304
Tssr83305 8 122893592 to 122893623 31 - TSS region transcription start site region 83305
Tssr83306 8 122893942 to 122893970 28 - TSS region transcription start site region 83306
Tssr83307 8 122893982 to 122894013 31 - TSS region transcription start site region 83307
Tssr83308 8 122894061 to 122894083 22 - TSS region transcription start site region 83308
Tssr83309 8 122894501 to 122894522 21 - TSS region transcription start site region 83309
Tssr83310 8 122894600 to 122894614 14 - TSS region transcription start site region 83310
Tssr83311 8 122894783 to 122894807 24 - TSS region transcription start site region 83311
Tssr83312 8 122895201 to 122895222 21 - TSS region transcription start site region 83312
Tssr83313 8 122895758 to 122895772 14 - TSS region transcription start site region 83313
Tssr83314 8 122895912 to 122895933 21 - TSS region transcription start site region 83314
Tssr2720 8 122903128 to 122903132 4 + TSS region transcription start site region 2720
Tssr83315 8 122914144 to 122914172 28 - TSS region transcription start site region 83315
1700123C12Rik 8 122914225 to 122917853 3628 unclassified non-coding RNA gene RIKEN cDNA 1700123C12 gene
Gm39272 8 122936888 to 122944485 7597 + lncRNA gene predicted gene, 39272
Tssr79903 8 122937853 to 122937883 30 + TSS region transcription start site region 79903
Tssr83316 8 122939587 to 122939592 5 - TSS region transcription start site region 83316
Tssr83317 8 122946521 to 122946524 3 - TSS region transcription start site region 83317
Tssr83318 8 122962640 to 122962654 14 - TSS region transcription start site region 83318
Tssr79904 8 122962926 to 122962933 7 + TSS region transcription start site region 79904
Tssr83319 8 122981977 to 122981981 4 - TSS region transcription start site region 83319
Gm24445 8 122982837 to 122982943 106 - snRNA gene predicted gene, 24445
Tssr83320 8 122986846 to 122986850 4 - TSS region transcription start site region 83320
Tssr2721 8 123001197 to 123001202 5 - TSS region transcription start site region 2721
Tssr83321 8 123013200 to 123013214 14 - TSS region transcription start site region 83321
Tssr83322 8 123013223 to 123013233 10 - TSS region transcription start site region 83322
Tssr83323 8 123013241 to 123013272 31 - TSS region transcription start site region 83323
Tssr83324 8 123013286 to 123013300 14 - TSS region transcription start site region 83324
Tssr83325 8 123013458 to 123013473 15 - TSS region transcription start site region 83325
Tssr83326 8 123023625 to 123023629 4 - TSS region transcription start site region 83326
Tssr83327 8 123025432 to 123025434 2 - TSS region transcription start site region 83327
Tssr83328 8 123028986 to 123028990 4 - TSS region transcription start site region 83328
Tssr83329 8 123032380 to 123032384 4 - TSS region transcription start site region 83329
Tssr83330 8 123032750 to 123032751 1 - TSS region transcription start site region 83330
Cpgi21237 8 123040992 to 123043205 2213 CpG island CpG island 21237
Tssr83331 8 123041046 to 123041053 7 - TSS region transcription start site region 83331
Tssr79905 8 123041373 to 123041389 16 + TSS region transcription start site region 79905
Tssr2722 8 123042090 to 123042095 5 - TSS region transcription start site region 2722
Tssr83332 8 123042232 to 123042243 11 - TSS region transcription start site region 83332
Tssr83333 8 123042245 to 123042270 25 - TSS region transcription start site region 83333
Tssr83334 8 123042271 to 123042302 31 - TSS region transcription start site region 83334
Tssr79906 8 123042414 to 123042436 22 + TSS region transcription start site region 79906
Tssr79907 8 123042559 to 123042654 95 + TSS region transcription start site region 79907
2810013P06Rik 8 123042575 to 123044602 2027 + bidirectional promoter lncRNA gene RIKEN cDNA 2810013P06 gene
Tssr79908 8 123042663 to 123042672 9 + TSS region transcription start site region 79908
Tssr79909 8 123062952 to 123062974 22 + TSS region transcription start site region 79909
Gm35677 8 123063475 to 123065229 1754 - lncRNA gene predicted gene, 35677
Cpgi21238 8 123065073 to 123066104 1031 CpG island CpG island 21238
Tssr79910 8 123065490 to 123065529 39 + TSS region transcription start site region 79910
Spg7 8 123065508 to 123097751 32243 + protein coding gene SPG7, paraplegin matrix AAA peptidase subunit
Cpgi21239 8 123102134 to 123103602 1468 CpG island CpG island 21239
Tssr83335 8 123102260 to 123102280 20 - TSS region transcription start site region 83335
Tssr79911 8 123102344 to 123102351 7 + TSS region transcription start site region 79911
Rpl13 8 123102350 to 123105244 2894 + protein coding gene ribosomal protein L13
Tssr79912 8 123102359 to 123102420 61 + TSS region transcription start site region 79912
Tssr79913 8 123102431 to 123102454 23 + TSS region transcription start site region 79913
Snord68 8 123103058 to 123103105 47 + snoRNA gene small nucleolar RNA, C/D box 68
Mir7079 8 123104975 to 123105043 68 + miRNA gene microRNA 7079
Cpgi21240 8 123116839 to 123118246 1407 CpG island CpG island 21240
Tssr79914 8 123117354 to 123117379 25 + TSS region transcription start site region 79914
Cpne7 8 123117374 to 123135182 17808 + protein coding gene copine VII
Tssr79915 8 123117387 to 123117404 17 + TSS region transcription start site region 79915
Tssr79916 8 123117447 to 123117476 29 + TSS region transcription start site region 79916
Cpgi21241 8 123126269 to 123126673 404 CpG island CpG island 21241
Mir7080 8 123130106 to 123130172 66 + miRNA gene microRNA 7080
Sult5a1 8 123142843 to 123158913 16070 - protein coding gene sulfotransferase family 5A, member 1
Tssr83336 8 123158229 to 123158264 35 - TSS region transcription start site region 83336
Tssr83337 8 123158268 to 123158295 27 - TSS region transcription start site region 83337
Tssr83338 8 123158307 to 123158325 18 - TSS region transcription start site region 83338
Gm42052 8 123169029 to 123171047 2018 + protein coding gene predicted gene, 42052
Gm4316 8 123172557 to 123178767 6210 + lincRNA gene predicted gene 4316
Tssr79917 8 123186108 to 123186117 9 + TSS region transcription start site region 79917
Tssr79918 8 123186163 to 123186174 11 + TSS region transcription start site region 79918
Tssr79919 8 123186237 to 123186262 25 + TSS region transcription start site region 79919
Dpep1 8 123186242 to 123201812 15570 + protein coding gene dipeptidase 1
Tssr79920 8 123186271 to 123186282 11 + TSS region transcription start site region 79920
Tssr79921 8 123186317 to 123186397 80 + TSS region transcription start site region 79921
Tssr79922 8 123186405 to 123186416 11 + TSS region transcription start site region 79922
Tssr2723 8 123193575 to 123193579 4 + TSS region transcription start site region 2723
Tssr79923 8 123193943 to 123193989 46 + TSS region transcription start site region 79923
Tssr79924 8 123194000 to 123194012 12 + TSS region transcription start site region 79924
Tssr79925 8 123194014 to 123194025 11 + TSS region transcription start site region 79925
Chmp1a 8 123204264 to 123212763 8499 - protein coding gene charged multivesicular body protein 1A
Tssr79926 8 123206539 to 123206540 1 + TSS region transcription start site region 79926
Rps12-ps9 8 123206623 to 123207021 398 + pseudogene ribosomal protein S12, pseudogene 9
Cpgi21242 8 123212245 to 123213407 1162 CpG island CpG island 21242
Tssr83339 8 123212742 to 123212779 37 - TSS region transcription start site region 83339
Tssr83340 8 123212780 to 123212789 9 - TSS region transcription start site region 83340
Tssr79927 8 123212826 to 123212848 22 + TSS region transcription start site region 79927
Spata33 8 123212832 to 123222046 9214 + protein coding gene spermatogenesis associated 33
Tssr79928 8 123212851 to 123212856 5 + TSS region transcription start site region 79928
Tssr79929 8 123212857 to 123212911 54 + TSS region transcription start site region 79929
Tssr79930 8 123212913 to 123212924 11 + TSS region transcription start site region 79930
Tssr79931 8 123213014 to 123213032 18 + TSS region transcription start site region 79931
Cpgi21243 8 123224428 to 123225427 999 CpG island CpG island 21243
Tssr79932 8 123224833 to 123224875 42 + TSS region transcription start site region 79932
Cdk10 8 123224842 to 123232250 7408 + protein coding gene cyclin-dependent kinase 10
Gm45842 8 123230799 to 123242160 11361 + antisense lncRNA gene predicted gene 45842
Spata2l 8 123232255 to 123236247 3992 - protein coding gene spermatogenesis associated 2-like
Tssr79933 8 123235064 to 123235072 8 + TSS region transcription start site region 79933
Tssr79934 8 123235086 to 123235096 10 + TSS region transcription start site region 79934
4933417D19Rik 8 123235091 to 123242359 7268 + antisense lncRNA gene RIKEN cDNA 4933417D19 gene
Tssr79935 8 123235105 to 123235117 12 + TSS region transcription start site region 79935
Cpgi21244 8 123235277 to 123236461 1184 CpG island CpG island 21244
Tssr83341 8 123236166 to 123236195 29 - TSS region transcription start site region 83341
Tssr83342 8 123236198 to 123236237 39 - TSS region transcription start site region 83342
Vps9d1 8 123242356 to 123254222 11866 - protein coding gene VPS9 domain containing 1
Cpgi21245 8 123253431 to 123255269 1838 CpG island CpG island 21245
Tssr83343 8 123254086 to 123254123 37 - TSS region transcription start site region 83343
Tssr83344 8 123254147 to 123254168 21 - TSS region transcription start site region 83344
Tssr83345 8 123254169 to 123254197 28 - TSS region transcription start site region 83345
Zfp276 8 123254195 to 123269745 15550 + protein coding gene zinc finger protein (C2H2 type) 276
Tssr79936 8 123254231 to 123254278 47 + TSS region transcription start site region 79936
Tssr79937 8 123254292 to 123254317 25 + TSS region transcription start site region 79937
Tssr2724 8 123254319 to 123254330 11 + TSS region transcription start site region 2724
Fanca 8 123268300 to 123318576 50276 - protein coding gene Fanconi anemia, complementation group A