Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:122005233-122455289

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Banp 8 121949786 to 122029260 79474 + protein coding gene BTG3 associated nuclear protein
Tssr79837 8 122006871 to 122006887 16 + TSS region transcription start site region 79837
Tssr79838 8 122006915 to 122006936 21 + TSS region transcription start site region 79838
Tssr79839 8 122015197 to 122015217 20 + TSS region transcription start site region 79839
Tssr79840 8 122025791 to 122025810 19 + TSS region transcription start site region 79840
Gm34413 8 122089585 to 122094867 5282 - lncRNA gene predicted gene, 34413
Tssr83255 8 122094820 to 122094865 45 - TSS region transcription start site region 83255
Tssr79841 8 122140004 to 122140022 18 + TSS region transcription start site region 79841
Tssr83256 8 122140561 to 122140585 24 - TSS region transcription start site region 83256
Gm39268 8 122145861 to 122150020 4159 - lncRNA gene predicted gene, 39268
4930448E06Rik 8 122173935 to 122175112 1177 unclassified gene RIKEN cDNA 4930448E06 gene
Tssr79842 8 122181788 to 122181795 7 + TSS region transcription start site region 79842
Cpgi21212 8 122229637 to 122231430 1793 CpG island CpG island 21212
Tssr79843 8 122230182 to 122230217 35 + TSS region transcription start site region 79843
Tssr79844 8 122230233 to 122230289 56 + TSS region transcription start site region 79844
Cpgi21213 8 122268947 to 122269820 873 CpG island CpG island 21213
Zfp469 8 122269569 to 122272650 3081 + protein coding gene zinc finger protein 469
Gm46057 8 122273878 to 122275650 1772 - lncRNA gene predicted gene, 46057
Gm39269 8 122275931 to 122287256 11325 - lncRNA gene predicted gene, 39269
Cpgi21214 8 122281242 to 122284869 3627 CpG island CpG island 21214
Tssr79845 8 122282117 to 122282140 23 + TSS region transcription start site region 79845
Zfpm1 8 122282141 to 122337251 55110 + protein coding gene zinc finger protein, multitype 1
Tssr79846 8 122282148 to 122282194 46 + TSS region transcription start site region 79846
Tssr79847 8 122282211 to 122282222 11 + TSS region transcription start site region 79847
Tssr79848 8 122306974 to 122306975 1 + TSS region transcription start site region 79848
Tssr79849 8 122307240 to 122307268 28 + TSS region transcription start site region 79849
Tssr79850 8 122332763 to 122332788 25 + TSS region transcription start site region 79850
Cpgi21215 8 122335404 to 122337362 1958 CpG island CpG island 21215
Tssr79851 8 122335960 to 122335972 12 + TSS region transcription start site region 79851
Gm45353 8 122339171 to 122343100 3929 + lincRNA gene predicted gene 45353
Tssr79852 8 122342450 to 122342459 9 + TSS region transcription start site region 79852
Gm46056 8 122343641 to 122346036 2395 - lncRNA gene predicted gene, 46056
Tssr79853 8 122356236 to 122356245 9 + TSS region transcription start site region 79853
Trhr2 8 122356967 to 122360746 3779 - protein coding gene thyrotropin releasing hormone receptor 2
Gm39270 8 122365059 to 122376483 11424 - lncRNA gene predicted gene, 39270
Gm20681 8 122374037 to 122376444 2407 + lincRNA gene predicted gene 20681
Cpgi21216 8 122376290 to 122377294 1004 CpG island CpG island 21216
Zc3h18 8 122376609 to 122417360 40751 + protein coding gene zinc finger CCCH-type containing 18
Tssr79854 8 122376611 to 122376652 41 + TSS region transcription start site region 79854
Tssr79855 8 122376662 to 122376673 11 + TSS region transcription start site region 79855
Tssr79856 8 122376676 to 122376701 25 + TSS region transcription start site region 79856
Tssr79857 8 122376900 to 122376929 29 + TSS region transcription start site region 79857
Tssr83257 8 122421087 to 122421110 23 - TSS region transcription start site region 83257
Tssr79858 8 122421800 to 122421803 3 + TSS region transcription start site region 79858
Il17c 8 122422085 to 122423639 1554 + protein coding gene interleukin 17C
Tssr79859 8 122424770 to 122424787 17 + TSS region transcription start site region 79859
Cyba 8 122424776 to 122432930 8154 - protein coding gene cytochrome b-245, alpha polypeptide
Tssr79860 8 122424940 to 122424974 34 + TSS region transcription start site region 79860
Tssr83258 8 122424979 to 122424998 19 - TSS region transcription start site region 83258
Tssr83259 8 122425017 to 122425028 11 - TSS region transcription start site region 83259
Tssr83260 8 122425042 to 122425056 14 - TSS region transcription start site region 83260
Tssr83261 8 122425061 to 122425087 26 - TSS region transcription start site region 83261
Tssr83262 8 122426214 to 122426234 20 - TSS region transcription start site region 83262
Tssr83263 8 122426240 to 122426260 20 - TSS region transcription start site region 83263
Tssr83264 8 122426961 to 122426997 36 - TSS region transcription start site region 83264
Tssr83265 8 122427707 to 122427711 4 - TSS region transcription start site region 83265
Tssr79861 8 122430556 to 122430565 9 + TSS region transcription start site region 79861
Tssr79862 8 122431690 to 122431705 15 + TSS region transcription start site region 79862
Tssr79863 8 122431712 to 122431770 58 + TSS region transcription start site region 79863
Tssr2716 8 122431878 to 122431891 13 + TSS region transcription start site region 2716
Tssr83266 8 122432446 to 122432456 10 - TSS region transcription start site region 83266
Cpgi21217 8 122432508 to 122433121 613 CpG island CpG island 21217
Tssr83267 8 122432894 to 122432923 29 - TSS region transcription start site region 83267
Tssr83268 8 122432924 to 122432946 22 - TSS region transcription start site region 83268
Tssr79864 8 122433019 to 122433032 13 + TSS region transcription start site region 79864
Mvd 8 122433601 to 122443422 9821 - protein coding gene mevalonate (diphospho) decarboxylase
Tssr79865 8 122436880 to 122436889 9 + TSS region transcription start site region 79865
Tssr79866 8 122438149 to 122438175 26 + TSS region transcription start site region 79866
Tssr79867 8 122438230 to 122438243 13 + TSS region transcription start site region 79867
Cpgi21218 8 122439400 to 122439714 314 CpG island CpG island 21218
Cpgi21219 8 122442680 to 122444025 1345 CpG island CpG island 21219
Tssr83269 8 122443363 to 122443403 40 - TSS region transcription start site region 83269
Tssr83270 8 122443404 to 122443426 22 - TSS region transcription start site region 83270
Tssr83271 8 122443432 to 122443439 7 - TSS region transcription start site region 83271
Tssr79868 8 122443635 to 122443659 24 + TSS region transcription start site region 79868
9330133O14Rik 8 122443656 to 122446476 2820 + lncRNA gene RIKEN cDNA 9330133O14 gene
Tssr79869 8 122443662 to 122443721 59 + TSS region transcription start site region 79869
Tssr79870 8 122444056 to 122444059 3 + TSS region transcription start site region 79870
Gm20735 8 122445268 to 122451322 6054 - lincRNA gene predicted gene, 20735
Snai3 8 122454208 to 122460733 6525 - protein coding gene snail family zinc finger 3