Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:121736788-122626795

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208 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Jph3 8 121730559 to 121791083 60524 + protein coding gene junctophilin 3
Cpgi21205 8 121752886 to 121753900 1014 CpG island CpG island 21205
Tssr83237 8 121792184 to 121792189 5 - TSS region transcription start site region 83237
Tssr83238 8 121792200 to 121792210 10 - TSS region transcription start site region 83238
Tssr83239 8 121792214 to 121792232 18 - TSS region transcription start site region 83239
Tssr83240 8 121792262 to 121792273 11 - TSS region transcription start site region 83240
Tssr79823 8 121792331 to 121792339 8 + TSS region transcription start site region 79823
Tssr83241 8 121792335 to 121792349 14 - TSS region transcription start site region 83241
Tssr79824 8 121792449 to 121792472 23 + TSS region transcription start site region 79824
Tssr79825 8 121792478 to 121792488 10 + TSS region transcription start site region 79825
Tssr2712 8 121796250 to 121796260 10 - TSS region transcription start site region 2712
Klhdc4 8 121796313 to 121829569 33256 - protein coding gene kelch domain containing 4
Tssr2713 8 121796483 to 121796493 10 - TSS region transcription start site region 2713
Tssr2714 8 121796667 to 121796678 11 + TSS region transcription start site region 2714
Tssr83242 8 121805309 to 121805320 11 - TSS region transcription start site region 83242
Tssr83243 8 121805326 to 121805338 12 - TSS region transcription start site region 83243
Tssr2715 8 121805498 to 121805511 13 + TSS region transcription start site region 2715
Tssr83244 8 121806262 to 121806284 22 - TSS region transcription start site region 83244
Tssr79826 8 121806386 to 121806397 11 + TSS region transcription start site region 79826
Gm20406 8 121806415 to 121807369 954 + antisense lncRNA gene predicted gene 20406
Tssr79827 8 121806418 to 121806432 14 + TSS region transcription start site region 79827
Cpgi21206 8 121829019 to 121829870 851 CpG island CpG island 21206
Tssr83245 8 121829506 to 121829515 9 - TSS region transcription start site region 83245
Tssr83246 8 121829520 to 121829571 51 - TSS region transcription start site region 83246
Tssr79828 8 121829670 to 121829689 19 + TSS region transcription start site region 79828
Gm24283 8 121830436 to 121830542 106 + snRNA gene predicted gene, 24283
Gm42047 8 121833800 to 121838825 5025 + pseudogene predicted gene, 42047
Gm42048 8 121843142 to 121843902 760 + lncRNA gene predicted gene, 42048
Gm26812 8 121850194 to 121860621 10427 + lincRNA gene predicted gene, 26812
Cpgi21207 8 121850893 to 121851088 195 CpG island CpG island 21207
Tssr83247 8 121851051 to 121851068 17 - TSS region transcription start site region 83247
Tssr79829 8 121851330 to 121851364 34 + TSS region transcription start site region 79829
9530085P06Rik 8 121856777 to 121857603 826 - unclassified gene RIKEN cDNA 9530085P06 gene
D8Ertd56e 8 121873548 to 121873748 200 DNA segment DNA segment, Chr 8, ERATO Doi 56, expressed
Slc7a5 8 121881146 to 121907686 26540 - protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 5
Tssr83248 8 121882958 to 121882984 26 - TSS region transcription start site region 83248
Tssr83249 8 121885959 to 121885987 28 - TSS region transcription start site region 83249
Cpgi21208 8 121906702 to 121908218 1516 CpG island CpG island 21208
Tssr79830 8 121906703 to 121906708 5 + TSS region transcription start site region 79830
Tssr79831 8 121907083 to 121907097 14 + TSS region transcription start site region 79831
Tssr83250 8 121907630 to 121907636 6 - TSS region transcription start site region 83250
Tssr83251 8 121907678 to 121907694 16 - TSS region transcription start site region 83251
Tssr79832 8 121907827 to 121907877 50 + TSS region transcription start site region 79832
BC048644 8 121907833 to 121918428 10595 + bidirectional promoter lncRNA gene cDNA sequence BC048644
Car5a 8 121916135 to 121944912 28777 - protein coding gene carbonic anhydrase 5a, mitochondrial
Cpgi21209 8 121916254 to 121916616 362 CpG island CpG island 21209
Tssr83252 8 121944849 to 121944880 31 - TSS region transcription start site region 83252
Tssr83253 8 121944886 to 121944908 22 - TSS region transcription start site region 83253
Gm37497 8 121947050 to 121947847 797 - unclassified gene predicted gene, 37497
Cpgi21210 8 121947832 to 121948064 232 CpG island CpG island 21210
Tssr79833 8 121947952 to 121947979 27 + TSS region transcription start site region 79833
Gm27011 8 121949674 to 121950645 971 - bidirectional promoter lncRNA gene predicted gene, 27011
Banp 8 121949786 to 122029260 79474 + protein coding gene BTG3 associated nuclear protein
Cpgi21211 8 121949824 to 121951602 1778 CpG island CpG island 21211
Tssr79834 8 121950557 to 121950656 99 + TSS region transcription start site region 79834
Tssr79835 8 121950675 to 121950687 12 + TSS region transcription start site region 79835
Tssr79836 8 121950743 to 121950766 23 + TSS region transcription start site region 79836
Gm17709 8 121972730 to 121973822 1092 - pseudogene predicted gene, 17709
Tssr83254 8 121974130 to 121974131 1 - TSS region transcription start site region 83254
Mir7237 8 121978024 to 121978086 62 + miRNA gene microRNA 7237
Tssr79837 8 122006871 to 122006887 16 + TSS region transcription start site region 79837
Tssr79838 8 122006915 to 122006936 21 + TSS region transcription start site region 79838
Tssr79839 8 122015197 to 122015217 20 + TSS region transcription start site region 79839
Tssr79840 8 122025791 to 122025810 19 + TSS region transcription start site region 79840
Gm34413 8 122089585 to 122094867 5282 - lncRNA gene predicted gene, 34413
Tssr83255 8 122094820 to 122094865 45 - TSS region transcription start site region 83255
Tssr79841 8 122140004 to 122140022 18 + TSS region transcription start site region 79841
Tssr83256 8 122140561 to 122140585 24 - TSS region transcription start site region 83256
Gm39268 8 122145861 to 122150020 4159 - lncRNA gene predicted gene, 39268
4930448E06Rik 8 122173935 to 122175112 1177 unclassified gene RIKEN cDNA 4930448E06 gene
Tssr79842 8 122181788 to 122181795 7 + TSS region transcription start site region 79842
Cpgi21212 8 122229637 to 122231430 1793 CpG island CpG island 21212
Tssr79843 8 122230182 to 122230217 35 + TSS region transcription start site region 79843
Tssr79844 8 122230233 to 122230289 56 + TSS region transcription start site region 79844
Cpgi21213 8 122268947 to 122269820 873 CpG island CpG island 21213
Zfp469 8 122269569 to 122272650 3081 + protein coding gene zinc finger protein 469
Gm46057 8 122273878 to 122275650 1772 - lncRNA gene predicted gene, 46057
Gm39269 8 122275931 to 122287256 11325 - lncRNA gene predicted gene, 39269
Cpgi21214 8 122281242 to 122284869 3627 CpG island CpG island 21214
Tssr79845 8 122282117 to 122282140 23 + TSS region transcription start site region 79845
Zfpm1 8 122282141 to 122337251 55110 + protein coding gene zinc finger protein, multitype 1
Tssr79846 8 122282148 to 122282194 46 + TSS region transcription start site region 79846
Tssr79847 8 122282211 to 122282222 11 + TSS region transcription start site region 79847
Tssr79848 8 122306974 to 122306975 1 + TSS region transcription start site region 79848
Tssr79849 8 122307240 to 122307268 28 + TSS region transcription start site region 79849
Tssr79850 8 122332763 to 122332788 25 + TSS region transcription start site region 79850
Cpgi21215 8 122335404 to 122337362 1958 CpG island CpG island 21215
Tssr79851 8 122335960 to 122335972 12 + TSS region transcription start site region 79851
Gm45353 8 122339171 to 122343100 3929 + lincRNA gene predicted gene 45353
Tssr79852 8 122342450 to 122342459 9 + TSS region transcription start site region 79852
Gm46056 8 122343641 to 122346036 2395 - lncRNA gene predicted gene, 46056
Tssr79853 8 122356236 to 122356245 9 + TSS region transcription start site region 79853
Trhr2 8 122356967 to 122360746 3779 - protein coding gene thyrotropin releasing hormone receptor 2
Gm39270 8 122365059 to 122376483 11424 - lncRNA gene predicted gene, 39270
Gm20681 8 122374037 to 122376444 2407 + lincRNA gene predicted gene 20681
Cpgi21216 8 122376290 to 122377294 1004 CpG island CpG island 21216
Zc3h18 8 122376609 to 122417360 40751 + protein coding gene zinc finger CCCH-type containing 18
Tssr79854 8 122376611 to 122376652 41 + TSS region transcription start site region 79854
Tssr79855 8 122376662 to 122376673 11 + TSS region transcription start site region 79855
Tssr79856 8 122376676 to 122376701 25 + TSS region transcription start site region 79856
Tssr79857 8 122376900 to 122376929 29 + TSS region transcription start site region 79857
Tssr83257 8 122421087 to 122421110 23 - TSS region transcription start site region 83257
Tssr79858 8 122421800 to 122421803 3 + TSS region transcription start site region 79858
Il17c 8 122422085 to 122423639 1554 + protein coding gene interleukin 17C
Tssr79859 8 122424770 to 122424787 17 + TSS region transcription start site region 79859
Cyba 8 122424776 to 122432930 8154 - protein coding gene cytochrome b-245, alpha polypeptide
Tssr79860 8 122424940 to 122424974 34 + TSS region transcription start site region 79860
Tssr83258 8 122424979 to 122424998 19 - TSS region transcription start site region 83258
Tssr83259 8 122425017 to 122425028 11 - TSS region transcription start site region 83259
Tssr83260 8 122425042 to 122425056 14 - TSS region transcription start site region 83260
Tssr83261 8 122425061 to 122425087 26 - TSS region transcription start site region 83261
Tssr83262 8 122426214 to 122426234 20 - TSS region transcription start site region 83262
Tssr83263 8 122426240 to 122426260 20 - TSS region transcription start site region 83263
Tssr83264 8 122426961 to 122426997 36 - TSS region transcription start site region 83264
Tssr83265 8 122427707 to 122427711 4 - TSS region transcription start site region 83265
Tssr79861 8 122430556 to 122430565 9 + TSS region transcription start site region 79861
Tssr79862 8 122431690 to 122431705 15 + TSS region transcription start site region 79862
Tssr79863 8 122431712 to 122431770 58 + TSS region transcription start site region 79863
Tssr2716 8 122431878 to 122431891 13 + TSS region transcription start site region 2716
Tssr83266 8 122432446 to 122432456 10 - TSS region transcription start site region 83266
Cpgi21217 8 122432508 to 122433121 613 CpG island CpG island 21217
Tssr83267 8 122432894 to 122432923 29 - TSS region transcription start site region 83267
Tssr83268 8 122432924 to 122432946 22 - TSS region transcription start site region 83268
Tssr79864 8 122433019 to 122433032 13 + TSS region transcription start site region 79864
Mvd 8 122433601 to 122443422 9821 - protein coding gene mevalonate (diphospho) decarboxylase
Tssr79865 8 122436880 to 122436889 9 + TSS region transcription start site region 79865
Tssr79866 8 122438149 to 122438175 26 + TSS region transcription start site region 79866
Tssr79867 8 122438230 to 122438243 13 + TSS region transcription start site region 79867
Cpgi21218 8 122439400 to 122439714 314 CpG island CpG island 21218
Cpgi21219 8 122442680 to 122444025 1345 CpG island CpG island 21219
Tssr83269 8 122443363 to 122443403 40 - TSS region transcription start site region 83269
Tssr83270 8 122443404 to 122443426 22 - TSS region transcription start site region 83270
Tssr83271 8 122443432 to 122443439 7 - TSS region transcription start site region 83271
Tssr79868 8 122443635 to 122443659 24 + TSS region transcription start site region 79868
9330133O14Rik 8 122443656 to 122446476 2820 + lncRNA gene RIKEN cDNA 9330133O14 gene
Tssr79869 8 122443662 to 122443721 59 + TSS region transcription start site region 79869
Tssr79870 8 122444056 to 122444059 3 + TSS region transcription start site region 79870
Gm20735 8 122445268 to 122451322 6054 - lincRNA gene predicted gene, 20735
Snai3 8 122454208 to 122460733 6525 - protein coding gene snail family zinc finger 3
Cpgi21220 8 122460258 to 122461395 1137 CpG island CpG island 21220
Tssr83272 8 122460666 to 122460695 29 - TSS region transcription start site region 83272
Rnf166 8 122466147 to 122476064 9917 - protein coding gene ring finger protein 166
Tssr79871 8 122470196 to 122470212 16 + TSS region transcription start site region 79871
Tssr79872 8 122470227 to 122470232 5 + TSS region transcription start site region 79872
Gm24366 8 122471627 to 122471712 85 - miRNA gene predicted gene, 24366
Tssr83273 8 122474776 to 122474781 5 - TSS region transcription start site region 83273
Cpgi21221 8 122474984 to 122476687 1703 CpG island CpG island 21221
Tssr83274 8 122475709 to 122475729 20 - TSS region transcription start site region 83274
Tssr83275 8 122476003 to 122476026 23 - TSS region transcription start site region 83275
Tssr83276 8 122476036 to 122476088 52 - TSS region transcription start site region 83276
Ctu2 8 122476094 to 122483094 7000 + protein coding gene cytosolic thiouridylase subunit 2
Tssr83277 8 122476096 to 122476115 19 - TSS region transcription start site region 83277
Tssr79873 8 122476152 to 122476194 42 + TSS region transcription start site region 79873
Tssr79874 8 122476196 to 122476223 27 + TSS region transcription start site region 79874
Piezo1 8 122481698 to 122551329 69631 - protein coding gene piezo-type mechanosensitive ion channel component 1
Cpgi21222 8 122488117 to 122488511 394 CpG island CpG island 21222
Tssr83278 8 122491935 to 122491941 6 - TSS region transcription start site region 83278
Gm26497 8 122520568 to 122520674 106 - snRNA gene predicted gene, 26497
Tssr79875 8 122523574 to 122523627 53 + TSS region transcription start site region 79875
Tssr79876 8 122523649 to 122523658 9 + TSS region transcription start site region 79876
Tssr79877 8 122546482 to 122546501 19 + TSS region transcription start site region 79877
Tssr79878 8 122549338 to 122549357 19 + TSS region transcription start site region 79878
Cpgi21223 8 122550094 to 122551912 1818 CpG island CpG island 21223
Tssr79879 8 122550421 to 122550432 11 + TSS region transcription start site region 79879
Tssr79880 8 122550651 to 122550698 47 + TSS region transcription start site region 79880
Tssr83279 8 122551316 to 122551333 17 - TSS region transcription start site region 83279
Gm34847 8 122556348 to 122559608 3260 + lncRNA gene predicted gene, 34847
Tssr83280 8 122556734 to 122556755 21 - TSS region transcription start site region 83280
Tssr79881 8 122557846 to 122557895 49 + TSS region transcription start site region 79881
Tssr79882 8 122564573 to 122564613 40 + TSS region transcription start site region 79882
Tssr79883 8 122564783 to 122564800 17 + TSS region transcription start site region 79883
Tssr79884 8 122564918 to 122564956 38 + TSS region transcription start site region 79884
Cpgi21224 8 122567233 to 122568486 1253 CpG island CpG island 21224
Tssr83281 8 122567706 to 122567715 9 - TSS region transcription start site region 83281
Tssr83282 8 122567771 to 122567793 22 - TSS region transcription start site region 83282
Tssr2717 8 122567976 to 122567983 7 + TSS region transcription start site region 2717
Tssr79885 8 122568001 to 122568020 19 + TSS region transcription start site region 79885
Cdt1 8 122568015 to 122573130 5115 + protein coding gene chromatin licensing and DNA replication factor 1
Tssr79886 8 122568021 to 122568060 39 + TSS region transcription start site region 79886
Tssr83283 8 122568348 to 122568367 19 - TSS region transcription start site region 83283
Tssr79887 8 122569173 to 122569195 22 + TSS region transcription start site region 79887
Tssr79888 8 122570230 to 122570250 20 + TSS region transcription start site region 79888
Tssr79889 8 122574635 to 122574638 3 + TSS region transcription start site region 79889
Aprt 8 122574637 to 122576907 2270 - protein coding gene adenine phosphoribosyl transferase
Tssr79890 8 122574805 to 122574810 5 + TSS region transcription start site region 79890
Tssr83284 8 122575017 to 122575033 16 - TSS region transcription start site region 83284
Tssr83285 8 122575431 to 122575444 13 - TSS region transcription start site region 83285
Tssr83286 8 122575448 to 122575478 30 - TSS region transcription start site region 83286
Cpgi21225 8 122576232 to 122577243 1011 CpG island CpG island 21225
Tssr83287 8 122576613 to 122576624 11 - TSS region transcription start site region 83287
Tssr83288 8 122576830 to 122576892 62 - TSS region transcription start site region 83288
Tssr83289 8 122576899 to 122576927 28 - TSS region transcription start site region 83289
Galns 8 122578242 to 122611463 33221 - protein coding gene galactosamine (N-acetyl)-6-sulfate sulfatase
Gm34962 8 122586818 to 122591272 4454 + pseudogene predicted gene, 34962
Tssr79891 8 122589694 to 122589696 2 + TSS region transcription start site region 79891
Cpgi21226 8 122594112 to 122594408 296 CpG island CpG island 21226
Tssr83290 8 122596092 to 122596111 19 - TSS region transcription start site region 83290
Tssr83291 8 122596176 to 122596192 16 - TSS region transcription start site region 83291
Gm45857 8 122596899 to 122597254 355 - pseudogene predicted gene 45857
Cpgi21227 8 122610968 to 122612161 1193 CpG island CpG island 21227