Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:121652730-122293822

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102 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi21199 8 121651132 to 121653656 2524 CpG island CpG island 21199
Tssr83235 8 121652852 to 121652888 36 - TSS region transcription start site region 83235
Tssr83236 8 121652895 to 121652913 18 - TSS region transcription start site region 83236
Gm27030 8 121654054 to 121654517 463 + lincRNA gene predicted gene, 27030
Cpgi21200 8 121660799 to 121660995 196 CpG island CpG island 21200
Gm23299 8 121666628 to 121666706 78 - snoRNA gene predicted gene, 23299
Gm45833 8 121666814 to 121674088 7274 - lincRNA gene predicted gene 45833
Cpgi21201 8 121675755 to 121675965 210 CpG island CpG island 21201
Cpgi21202 8 121693635 to 121693840 205 CpG island CpG island 21202
Cpgi21203 8 121709256 to 121709488 232 CpG island CpG island 21203
Gm46065 8 121725711 to 121730504 4793 - protein coding gene predicted gene, 46065
Cpgi21204 8 121729274 to 121731887 2613 CpG island CpG island 21204
Tssr79817 8 121729962 to 121729999 37 + TSS region transcription start site region 79817
Tssr2711 8 121730009 to 121730019 10 + TSS region transcription start site region 2711
Tssr79818 8 121730079 to 121730164 85 + TSS region transcription start site region 79818
Tssr79819 8 121730333 to 121730358 25 + TSS region transcription start site region 79819
Tssr79820 8 121730372 to 121730387 15 + TSS region transcription start site region 79820
Tssr79821 8 121730391 to 121730404 13 + TSS region transcription start site region 79821
Jph3 8 121730559 to 121791083 60524 + protein coding gene junctophilin 3
Tssr79822 8 121730587 to 121730589 2 + TSS region transcription start site region 79822
Cpgi21205 8 121752886 to 121753900 1014 CpG island CpG island 21205
Tssr83237 8 121792184 to 121792189 5 - TSS region transcription start site region 83237
Tssr83238 8 121792200 to 121792210 10 - TSS region transcription start site region 83238
Tssr83239 8 121792214 to 121792232 18 - TSS region transcription start site region 83239
Tssr83240 8 121792262 to 121792273 11 - TSS region transcription start site region 83240
Tssr79823 8 121792331 to 121792339 8 + TSS region transcription start site region 79823
Tssr83241 8 121792335 to 121792349 14 - TSS region transcription start site region 83241
Tssr79824 8 121792449 to 121792472 23 + TSS region transcription start site region 79824
Tssr79825 8 121792478 to 121792488 10 + TSS region transcription start site region 79825
Tssr2712 8 121796250 to 121796260 10 - TSS region transcription start site region 2712
Klhdc4 8 121796313 to 121829569 33256 - protein coding gene kelch domain containing 4
Tssr2713 8 121796483 to 121796493 10 - TSS region transcription start site region 2713
Tssr2714 8 121796667 to 121796678 11 + TSS region transcription start site region 2714
Tssr83242 8 121805309 to 121805320 11 - TSS region transcription start site region 83242
Tssr83243 8 121805326 to 121805338 12 - TSS region transcription start site region 83243
Tssr2715 8 121805498 to 121805511 13 + TSS region transcription start site region 2715
Tssr83244 8 121806262 to 121806284 22 - TSS region transcription start site region 83244
Tssr79826 8 121806386 to 121806397 11 + TSS region transcription start site region 79826
Gm20406 8 121806415 to 121807369 954 + antisense lncRNA gene predicted gene 20406
Tssr79827 8 121806418 to 121806432 14 + TSS region transcription start site region 79827
Cpgi21206 8 121829019 to 121829870 851 CpG island CpG island 21206
Tssr83245 8 121829506 to 121829515 9 - TSS region transcription start site region 83245
Tssr83246 8 121829520 to 121829571 51 - TSS region transcription start site region 83246
Tssr79828 8 121829670 to 121829689 19 + TSS region transcription start site region 79828
Gm24283 8 121830436 to 121830542 106 + snRNA gene predicted gene, 24283
Gm42047 8 121833800 to 121838825 5025 + pseudogene predicted gene, 42047
Gm42048 8 121843142 to 121843902 760 + lncRNA gene predicted gene, 42048
Gm26812 8 121850194 to 121860621 10427 + lincRNA gene predicted gene, 26812
Cpgi21207 8 121850893 to 121851088 195 CpG island CpG island 21207
Tssr83247 8 121851051 to 121851068 17 - TSS region transcription start site region 83247
Tssr79829 8 121851330 to 121851364 34 + TSS region transcription start site region 79829
9530085P06Rik 8 121856777 to 121857603 826 - unclassified gene RIKEN cDNA 9530085P06 gene
D8Ertd56e 8 121873548 to 121873748 200 DNA segment DNA segment, Chr 8, ERATO Doi 56, expressed
Slc7a5 8 121881146 to 121907686 26540 - protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 5
Tssr83248 8 121882958 to 121882984 26 - TSS region transcription start site region 83248
Tssr83249 8 121885959 to 121885987 28 - TSS region transcription start site region 83249
Cpgi21208 8 121906702 to 121908218 1516 CpG island CpG island 21208
Tssr79830 8 121906703 to 121906708 5 + TSS region transcription start site region 79830
Tssr79831 8 121907083 to 121907097 14 + TSS region transcription start site region 79831
Tssr83250 8 121907630 to 121907636 6 - TSS region transcription start site region 83250
Tssr83251 8 121907678 to 121907694 16 - TSS region transcription start site region 83251
Tssr79832 8 121907827 to 121907877 50 + TSS region transcription start site region 79832
BC048644 8 121907833 to 121918428 10595 + bidirectional promoter lncRNA gene cDNA sequence BC048644
Car5a 8 121916135 to 121944912 28777 - protein coding gene carbonic anhydrase 5a, mitochondrial
Cpgi21209 8 121916254 to 121916616 362 CpG island CpG island 21209
Tssr83252 8 121944849 to 121944880 31 - TSS region transcription start site region 83252
Tssr83253 8 121944886 to 121944908 22 - TSS region transcription start site region 83253
Gm37497 8 121947050 to 121947847 797 - unclassified gene predicted gene, 37497
Cpgi21210 8 121947832 to 121948064 232 CpG island CpG island 21210
Tssr79833 8 121947952 to 121947979 27 + TSS region transcription start site region 79833
Gm27011 8 121949674 to 121950645 971 - bidirectional promoter lncRNA gene predicted gene, 27011
Banp 8 121949786 to 122029260 79474 + protein coding gene BTG3 associated nuclear protein
Cpgi21211 8 121949824 to 121951602 1778 CpG island CpG island 21211
Tssr79834 8 121950557 to 121950656 99 + TSS region transcription start site region 79834
Tssr79835 8 121950675 to 121950687 12 + TSS region transcription start site region 79835
Tssr79836 8 121950743 to 121950766 23 + TSS region transcription start site region 79836
Gm17709 8 121972730 to 121973822 1092 - pseudogene predicted gene, 17709
Tssr83254 8 121974130 to 121974131 1 - TSS region transcription start site region 83254
Mir7237 8 121978024 to 121978086 62 + miRNA gene microRNA 7237
Tssr79837 8 122006871 to 122006887 16 + TSS region transcription start site region 79837
Tssr79838 8 122006915 to 122006936 21 + TSS region transcription start site region 79838
Tssr79839 8 122015197 to 122015217 20 + TSS region transcription start site region 79839
Tssr79840 8 122025791 to 122025810 19 + TSS region transcription start site region 79840
Gm34413 8 122089585 to 122094867 5282 - lncRNA gene predicted gene, 34413
Tssr83255 8 122094820 to 122094865 45 - TSS region transcription start site region 83255
Tssr79841 8 122140004 to 122140022 18 + TSS region transcription start site region 79841
Tssr83256 8 122140561 to 122140585 24 - TSS region transcription start site region 83256
Gm39268 8 122145861 to 122150020 4159 - lncRNA gene predicted gene, 39268
4930448E06Rik 8 122173935 to 122175112 1177 unclassified gene RIKEN cDNA 4930448E06 gene
Tssr79842 8 122181788 to 122181795 7 + TSS region transcription start site region 79842
Cpgi21212 8 122229637 to 122231430 1793 CpG island CpG island 21212
Tssr79843 8 122230182 to 122230217 35 + TSS region transcription start site region 79843
Tssr79844 8 122230233 to 122230289 56 + TSS region transcription start site region 79844
Cpgi21213 8 122268947 to 122269820 873 CpG island CpG island 21213
Zfp469 8 122269569 to 122272650 3081 + protein coding gene zinc finger protein 469
Gm46057 8 122273878 to 122275650 1772 - lncRNA gene predicted gene, 46057
Gm39269 8 122275931 to 122287256 11325 - lncRNA gene predicted gene, 39269
Cpgi21214 8 122281242 to 122284869 3627 CpG island CpG island 21214
Tssr79845 8 122282117 to 122282140 23 + TSS region transcription start site region 79845
Zfpm1 8 122282141 to 122337251 55110 + protein coding gene zinc finger protein, multitype 1
Tssr79846 8 122282148 to 122282194 46 + TSS region transcription start site region 79846
Tssr79847 8 122282211 to 122282222 11 + TSS region transcription start site region 79847