Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:12158819-12400657

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D8Mit123 8 12170146 to 12170257 111 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 123
D8Mit202 8 12214666 to 12214771 105 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 202
Gm33029 8 12234676 to 12239916 5240 - lncRNA gene predicted gene, 33029
A230072I06Rik 8 12278819 to 12280657 1838 + unclassified gene RIKEN cDNA A230072I06 gene
Gm29175 8 12282211 to 12282612 401 + lincRNA gene predicted gene 29175
Tssr2490 8 12314677 to 12314681 4 + TSS region transcription start site region 2490
Gm33175 8 12315004 to 12319480 4476 - lincRNA gene predicted gene, 33175
Tssr76263 8 12323644 to 12323659 15 + TSS region transcription start site region 76263
Tssr76264 8 12323660 to 12323675 15 + TSS region transcription start site region 76264
Tssr76265 8 12323837 to 12323844 7 + TSS region transcription start site region 76265
Gm22207 8 12356153 to 12356469 316 + unclassified non-coding RNA gene predicted gene, 22207
Cpgi20091 8 12384804 to 12387145 2341 CpG island CpG island 20091
Tssr76266 8 12385739 to 12385750 11 + TSS region transcription start site region 76266
Tssr76267 8 12385751 to 12385766 15 + TSS region transcription start site region 76267
Tssr76268 8 12385769 to 12385780 11 + TSS region transcription start site region 76268
Sox1ot 8 12385771 to 12436732 50961 + sense overlapping lncRNA gene Sox1 overlapping transcript
Tssr2491 8 12385806 to 12385809 3 + TSS region transcription start site region 2491
Gm45560 8 12390168 to 12391639 1471 + unclassified gene predicted gene 45560
Cpgi20092 8 12390254 to 12390841 587 CpG island CpG island 20092
Cpgi20093 8 12391481 to 12391954 473 CpG island CpG island 20093
Cpgi20094 8 12394834 to 12397978 3144 CpG island CpG island 20094
Tssr76269 8 12395287 to 12395295 8 + TSS region transcription start site region 76269
Tssr76270 8 12395500 to 12395511 11 + TSS region transcription start site region 76270
Sox1 8 12395519 to 12399555 4036 + protein coding gene SRY (sex determining region Y)-box 1
Tssr76271 8 12395526 to 12395531 5 + TSS region transcription start site region 76271
Tssr76272 8 12395603 to 12395621 18 + TSS region transcription start site region 76272
Tssr76273 8 12395629 to 12395644 15 + TSS region transcription start site region 76273
Tssr76274 8 12395670 to 12395682 12 + TSS region transcription start site region 76274
Tssr76275 8 12395843 to 12395852 9 + TSS region transcription start site region 76275
Tssr76276 8 12395874 to 12395885 11 + TSS region transcription start site region 76276
Tssr76277 8 12395892 to 12395919 27 + TSS region transcription start site region 76277
Tssr76278 8 12396116 to 12396127 11 + TSS region transcription start site region 76278
Tssr76279 8 12396205 to 12396222 17 + TSS region transcription start site region 76279
Tssr76280 8 12396267 to 12396279 12 + TSS region transcription start site region 76280
Tssr76281 8 12396320 to 12396363 43 + TSS region transcription start site region 76281
Gm25239 8 12396403 to 12396488 85 + miRNA gene predicted gene, 25239