Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:121359229-121799301

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr79806 8 121421208 to 121421218 10 + TSS region transcription start site region 79806
Gm26747 8 121421238 to 121428043 6805 + lincRNA gene predicted gene, 26747
Gm26784 8 121434980 to 121435389 409 + lincRNA gene predicted gene, 26784
Cpgi21189 8 121454864 to 121455121 257 CpG island CpG island 21189
Cpgi21190 8 121468152 to 121468498 346 CpG island CpG island 21190
Cpgi21191 8 121480565 to 121480868 303 CpG island CpG island 21191
Cpgi21192 8 121484644 to 121485078 434 CpG island CpG island 21192
1700018B08Rik 8 121530780 to 121544320 13540 - protein coding gene RIKEN cDNA 1700018B08 gene
Cpgi21193 8 121541768 to 121542202 434 CpG island CpG island 21193
Tssr83224 8 121541939 to 121541946 7 - TSS region transcription start site region 83224
Tssr83225 8 121541962 to 121541974 12 - TSS region transcription start site region 83225
Tssr79807 8 121542065 to 121542072 7 + TSS region transcription start site region 79807
Gm27045 8 121542080 to 121543481 1401 + bidirectional promoter lncRNA gene predicted gene, 27045
Tssr79808 8 121542080 to 121542087 7 + TSS region transcription start site region 79808
Tssr79809 8 121542099 to 121542106 7 + TSS region transcription start site region 79809
Tssr79810 8 121542109 to 121542135 26 + TSS region transcription start site region 79810
Tssr83226 8 121544284 to 121544314 30 - TSS region transcription start site region 83226
Tssr83227 8 121544315 to 121544333 18 - TSS region transcription start site region 83227
Tssr79811 8 121544378 to 121544387 9 + TSS region transcription start site region 79811
1700030M09Rik 8 121544388 to 121547652 3264 + bidirectional promoter lncRNA gene RIKEN cDNA 1700030M09 gene
Tssr79812 8 121544394 to 121544425 31 + TSS region transcription start site region 79812
Fbxo31 8 121549440 to 121578806 29366 - protein coding gene F-box protein 31
Tssr83228 8 121570330 to 121570332 2 - TSS region transcription start site region 83228
Cpgi21194 8 121570407 to 121570983 576 CpG island CpG island 21194
Tssr83229 8 121570461 to 121570466 5 - TSS region transcription start site region 83229
Tssr79813 8 121570634 to 121570648 14 + TSS region transcription start site region 79813
Tssr2710 8 121571365 to 121571368 3 - TSS region transcription start site region 2710
Cpgi21195 8 121578014 to 121579394 1380 CpG island CpG island 21195
Tssr83230 8 121578671 to 121578682 11 - TSS region transcription start site region 83230
Tssr83231 8 121578755 to 121578817 62 - TSS region transcription start site region 83231
n-TMcat17 8 121579229 to 121579301 72 - tRNA gene nuclear encoded tRNA methionine 17 (anticodon CAT)
Tssr83232 8 121580507 to 121580541 34 - TSS region transcription start site region 83232
Tssr79814 8 121581734 to 121581736 2 + TSS region transcription start site region 79814
Gm17786 8 121581765 to 121582191 426 + pseudogene predicted gene, 17786
Cpgi21196 8 121585191 to 121585796 605 CpG island CpG island 21196
Cpgi21197 8 121590086 to 121591115 1029 CpG island CpG island 21197
Tssr83233 8 121590299 to 121590345 46 - TSS region transcription start site region 83233
Tssr79815 8 121590424 to 121590469 45 + TSS region transcription start site region 79815
Map1lc3b 8 121590468 to 121598047 7579 + protein coding gene microtubule-associated protein 1 light chain 3 beta
Tssr79816 8 121597779 to 121597794 15 + TSS region transcription start site region 79816
Zcchc14 8 121598697 to 121652716 54019 - protein coding gene zinc finger, CCHC domain containing 14
Tssr83234 8 121602254 to 121602258 4 - TSS region transcription start site region 83234
2600002B07Rik 8 121616547 to 121617907 1360 unclassified gene RIKEN cDNA 2600002B07 gene
Cpgi21198 8 121648438 to 121648706 268 CpG island CpG island 21198
Cpgi21199 8 121651132 to 121653656 2524 CpG island CpG island 21199
Tssr83235 8 121652852 to 121652888 36 - TSS region transcription start site region 83235
Tssr83236 8 121652895 to 121652913 18 - TSS region transcription start site region 83236
Gm27030 8 121654054 to 121654517 463 + lincRNA gene predicted gene, 27030
Cpgi21200 8 121660799 to 121660995 196 CpG island CpG island 21200
Gm23299 8 121666628 to 121666706 78 - snoRNA gene predicted gene, 23299
Gm45833 8 121666814 to 121674088 7274 - lincRNA gene predicted gene 45833
Cpgi21201 8 121675755 to 121675965 210 CpG island CpG island 21201
Cpgi21202 8 121693635 to 121693840 205 CpG island CpG island 21202
Cpgi21203 8 121709256 to 121709488 232 CpG island CpG island 21203
Gm46065 8 121725711 to 121730504 4793 - protein coding gene predicted gene, 46065
Cpgi21204 8 121729274 to 121731887 2613 CpG island CpG island 21204
Tssr79817 8 121729962 to 121729999 37 + TSS region transcription start site region 79817
Tssr2711 8 121730009 to 121730019 10 + TSS region transcription start site region 2711
Tssr79818 8 121730079 to 121730164 85 + TSS region transcription start site region 79818
Tssr79819 8 121730333 to 121730358 25 + TSS region transcription start site region 79819
Tssr79820 8 121730372 to 121730387 15 + TSS region transcription start site region 79820
Tssr79821 8 121730391 to 121730404 13 + TSS region transcription start site region 79821
Jph3 8 121730559 to 121791083 60524 + protein coding gene junctophilin 3
Tssr79822 8 121730587 to 121730589 2 + TSS region transcription start site region 79822
Cpgi21205 8 121752886 to 121753900 1014 CpG island CpG island 21205
Tssr83237 8 121792184 to 121792189 5 - TSS region transcription start site region 83237
Tssr83238 8 121792200 to 121792210 10 - TSS region transcription start site region 83238
Tssr83239 8 121792214 to 121792232 18 - TSS region transcription start site region 83239
Tssr83240 8 121792262 to 121792273 11 - TSS region transcription start site region 83240
Tssr79823 8 121792331 to 121792339 8 + TSS region transcription start site region 79823
Tssr83241 8 121792335 to 121792349 14 - TSS region transcription start site region 83241
Tssr79824 8 121792449 to 121792472 23 + TSS region transcription start site region 79824
Tssr79825 8 121792478 to 121792488 10 + TSS region transcription start site region 79825
Tssr2712 8 121796250 to 121796260 10 - TSS region transcription start site region 2712
Klhdc4 8 121796313 to 121829569 33256 - protein coding gene kelch domain containing 4
Tssr2713 8 121796483 to 121796493 10 - TSS region transcription start site region 2713
Tssr2714 8 121796667 to 121796678 11 + TSS region transcription start site region 2714