Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:120842238-121772371

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136 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi21162 8 120847871 to 120848052 181 CpG island CpG island 21162
Gm39267 8 120851385 to 120867621 16236 - lncRNA gene predicted gene, 39267
Gm33368 8 120868990 to 120874597 5607 - lncRNA gene predicted gene, 33368
Gm26878 8 120879399 to 120881217 1818 + lincRNA gene predicted gene, 26878
Cpgi21163 8 120883341 to 120883674 333 CpG island CpG island 21163
Cpgi21164 8 120887422 to 120887685 263 CpG island CpG island 21164
Cpgi21165 8 120900481 to 120900867 386 CpG island CpG island 21165
Gm33471 8 120917008 to 120919697 2689 + lncRNA gene predicted gene, 33471
Cpgi21166 8 120971997 to 120972561 564 CpG island CpG island 21166
Gm28324 8 121002927 to 121003190 263 + lincRNA gene predicted gene 28324
Gm33579 8 121016513 to 121023617 7104 - lncRNA gene predicted gene, 33579
Cpgi21167 8 121016632 to 121016989 357 CpG island CpG island 21167
Gm46071 8 121035751 to 121037957 2206 - lncRNA gene predicted gene, 46071
Cpgi21168 8 121043372 to 121043729 357 CpG island CpG island 21168
Fendrr 8 121054882 to 121083110 28228 - lncRNA gene Foxf1 adjacent non-coding developmental regulatory RNA
Cpgi21169 8 121063716 to 121063887 171 CpG island CpG island 21169
Tssr83214 8 121070300 to 121070323 23 - TSS region transcription start site region 83214
Cpgi21170 8 121071529 to 121071694 165 CpG island CpG island 21170
Cpgi21171 8 121073480 to 121074034 554 CpG island CpG island 21171
Tssr79796 8 121079479 to 121079485 6 + TSS region transcription start site region 79796
Cpgi21172 8 121080209 to 121081235 1026 CpG island CpG island 21172
Cpgi21173 8 121082307 to 121085419 3112 CpG island CpG island 21173
Tssr83215 8 121083023 to 121083050 27 - TSS region transcription start site region 83215
Tssr83216 8 121083052 to 121083083 31 - TSS region transcription start site region 83216
Tssr83217 8 121083085 to 121083153 68 - TSS region transcription start site region 83217
Tssr83218 8 121083166 to 121083191 25 - TSS region transcription start site region 83218
Tssr79797 8 121083330 to 121083340 10 + TSS region transcription start site region 79797
Tssr79798 8 121083838 to 121083859 21 + TSS region transcription start site region 79798
Tssr83219 8 121083916 to 121083934 18 - TSS region transcription start site region 83219
Tssr83220 8 121083949 to 121083972 23 - TSS region transcription start site region 83220
Tssr79799 8 121084334 to 121084341 7 + TSS region transcription start site region 79799
Tssr79800 8 121084352 to 121084368 16 + TSS region transcription start site region 79800
Foxf1 8 121084386 to 121088144 3758 + protein coding gene forkhead box F1
Gm27530 8 121084609 to 121084706 97 - miRNA gene predicted gene, 27530
Cpgi21174 8 121088722 to 121090030 1308 CpG island CpG island 21174
Cpgi21175 8 121092853 to 121093088 235 CpG island CpG island 21175
Mthfsd 8 121097555 to 121108415 10860 - protein coding gene methenyltetrahydrofolate synthetase domain containing
Cpgi21176 8 121107724 to 121108768 1044 CpG island CpG island 21176
Tssr83221 8 121108301 to 121108359 58 - TSS region transcription start site region 83221
Tssr83222 8 121108361 to 121108406 45 - TSS region transcription start site region 83222
Cpgi21177 8 121113307 to 121113690 383 CpG island CpG island 21177
Cpgi21178 8 121114803 to 121115501 698 CpG island CpG island 21178
Cpgi21179 8 121116031 to 121118330 2299 CpG island CpG island 21179
Tssr79801 8 121116163 to 121116177 14 + TSS region transcription start site region 79801
Foxc2 8 121116171 to 121118895 2724 + protein coding gene forkhead box C2
Tssr79802 8 121116190 to 121116201 11 + TSS region transcription start site region 79802
Tssr79803 8 121116866 to 121116872 6 + TSS region transcription start site region 79803
Tssr79804 8 121118325 to 121118332 7 + TSS region transcription start site region 79804
Cpgi21180 8 121125286 to 121125901 615 CpG island CpG island 21180
Tssr83223 8 121125635 to 121125640 5 - TSS region transcription start site region 83223
Cpgi21181 8 121127732 to 121129407 1675 CpG island CpG island 21181
Tssr79805 8 121127827 to 121127848 21 + TSS region transcription start site region 79805
Foxl1 8 121127940 to 121130644 2704 + protein coding gene forkhead box L1
Gm37609 8 121140943 to 121141620 677 + unclassified gene predicted gene, 37609
Gm33633 8 121166916 to 121168363 1447 - lncRNA gene predicted gene, 33633
Cpgi21182 8 121170681 to 121170875 194 CpG island CpG island 21182
Gm42046 8 121172324 to 121183403 11079 + lncRNA gene predicted gene, 42046
5033426O07Rik 8 121198714 to 121203496 4782 - lincRNA gene RIKEN cDNA 5033426O07 gene
Cpgi21183 8 121213174 to 121213564 390 CpG island CpG island 21183
Gm33739 8 121213807 to 121222717 8910 + lncRNA gene predicted gene, 33739
Cpgi21184 8 121220574 to 121220785 211 CpG island CpG island 21184
D8Mit169 8 121232856 to 121232998 142 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 169
Gm26815 8 121256747 to 121356836 100089 - lincRNA gene predicted gene, 26815
Gm33823 8 121261747 to 121264665 2918 - lncRNA gene predicted gene, 33823
Cpgi21185 8 121272549 to 121273335 786 CpG island CpG island 21185
Cpgi21186 8 121290701 to 121290859 158 CpG island CpG island 21186
Cpgi21187 8 121293916 to 121294534 618 CpG island CpG island 21187
Sluc38 8 121307238 to 121307371 133 QTL susceptibility to lung cancer 38
Sluc38a 8 121307238 to 121307371 133 QTL susceptibility to lung cancer 38a
D8Mit36 8 121307238 to 121307371 133 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 36
Cpgi21188 8 121311004 to 121311209 205 CpG island CpG island 21188
Tssr79806 8 121421208 to 121421218 10 + TSS region transcription start site region 79806
Gm26747 8 121421238 to 121428043 6805 + lincRNA gene predicted gene, 26747
Gm26784 8 121434980 to 121435389 409 + lincRNA gene predicted gene, 26784
Cpgi21189 8 121454864 to 121455121 257 CpG island CpG island 21189
Cpgi21190 8 121468152 to 121468498 346 CpG island CpG island 21190
Cpgi21191 8 121480565 to 121480868 303 CpG island CpG island 21191
Cpgi21192 8 121484644 to 121485078 434 CpG island CpG island 21192
1700018B08Rik 8 121530780 to 121544320 13540 - protein coding gene RIKEN cDNA 1700018B08 gene
Cpgi21193 8 121541768 to 121542202 434 CpG island CpG island 21193
Tssr83224 8 121541939 to 121541946 7 - TSS region transcription start site region 83224
Tssr83225 8 121541962 to 121541974 12 - TSS region transcription start site region 83225
Tssr79807 8 121542065 to 121542072 7 + TSS region transcription start site region 79807
Gm27045 8 121542080 to 121543481 1401 + bidirectional promoter lncRNA gene predicted gene, 27045
Tssr79808 8 121542080 to 121542087 7 + TSS region transcription start site region 79808
Tssr79809 8 121542099 to 121542106 7 + TSS region transcription start site region 79809
Tssr79810 8 121542109 to 121542135 26 + TSS region transcription start site region 79810
Tssr83226 8 121544284 to 121544314 30 - TSS region transcription start site region 83226
Tssr83227 8 121544315 to 121544333 18 - TSS region transcription start site region 83227
Tssr79811 8 121544378 to 121544387 9 + TSS region transcription start site region 79811
1700030M09Rik 8 121544388 to 121547652 3264 + bidirectional promoter lncRNA gene RIKEN cDNA 1700030M09 gene
Tssr79812 8 121544394 to 121544425 31 + TSS region transcription start site region 79812
Fbxo31 8 121549440 to 121578806 29366 - protein coding gene F-box protein 31
Tssr83228 8 121570330 to 121570332 2 - TSS region transcription start site region 83228
Cpgi21194 8 121570407 to 121570983 576 CpG island CpG island 21194
Tssr83229 8 121570461 to 121570466 5 - TSS region transcription start site region 83229
Tssr79813 8 121570634 to 121570648 14 + TSS region transcription start site region 79813
Tssr2710 8 121571365 to 121571368 3 - TSS region transcription start site region 2710
Cpgi21195 8 121578014 to 121579394 1380 CpG island CpG island 21195
Tssr83230 8 121578671 to 121578682 11 - TSS region transcription start site region 83230
Tssr83231 8 121578755 to 121578817 62 - TSS region transcription start site region 83231
n-TMcat17 8 121579229 to 121579301 72 - tRNA gene nuclear encoded tRNA methionine 17 (anticodon CAT)
Tssr83232 8 121580507 to 121580541 34 - TSS region transcription start site region 83232
Tssr79814 8 121581734 to 121581736 2 + TSS region transcription start site region 79814
Gm17786 8 121581765 to 121582191 426 + pseudogene predicted gene, 17786
Cpgi21196 8 121585191 to 121585796 605 CpG island CpG island 21196
Cpgi21197 8 121590086 to 121591115 1029 CpG island CpG island 21197
Tssr83233 8 121590299 to 121590345 46 - TSS region transcription start site region 83233
Tssr79815 8 121590424 to 121590469 45 + TSS region transcription start site region 79815
Map1lc3b 8 121590468 to 121598047 7579 + protein coding gene microtubule-associated protein 1 light chain 3 beta
Tssr79816 8 121597779 to 121597794 15 + TSS region transcription start site region 79816
Zcchc14 8 121598697 to 121652716 54019 - protein coding gene zinc finger, CCHC domain containing 14
Tssr83234 8 121602254 to 121602258 4 - TSS region transcription start site region 83234
2600002B07Rik 8 121616547 to 121617907 1360 unclassified gene RIKEN cDNA 2600002B07 gene
Cpgi21198 8 121648438 to 121648706 268 CpG island CpG island 21198
Cpgi21199 8 121651132 to 121653656 2524 CpG island CpG island 21199
Tssr83235 8 121652852 to 121652888 36 - TSS region transcription start site region 83235
Tssr83236 8 121652895 to 121652913 18 - TSS region transcription start site region 83236
Gm27030 8 121654054 to 121654517 463 + lincRNA gene predicted gene, 27030
Cpgi21200 8 121660799 to 121660995 196 CpG island CpG island 21200
Gm23299 8 121666628 to 121666706 78 - snoRNA gene predicted gene, 23299
Gm45833 8 121666814 to 121674088 7274 - lincRNA gene predicted gene 45833
Cpgi21201 8 121675755 to 121675965 210 CpG island CpG island 21201
Cpgi21202 8 121693635 to 121693840 205 CpG island CpG island 21202
Cpgi21203 8 121709256 to 121709488 232 CpG island CpG island 21203
Gm46065 8 121725711 to 121730504 4793 - protein coding gene predicted gene, 46065
Cpgi21204 8 121729274 to 121731887 2613 CpG island CpG island 21204
Tssr79817 8 121729962 to 121729999 37 + TSS region transcription start site region 79817
Tssr2711 8 121730009 to 121730019 10 + TSS region transcription start site region 2711
Tssr79818 8 121730079 to 121730164 85 + TSS region transcription start site region 79818
Tssr79819 8 121730333 to 121730358 25 + TSS region transcription start site region 79819
Tssr79820 8 121730372 to 121730387 15 + TSS region transcription start site region 79820
Tssr79821 8 121730391 to 121730404 13 + TSS region transcription start site region 79821
Jph3 8 121730559 to 121791083 60524 + protein coding gene junctophilin 3
Tssr79822 8 121730587 to 121730589 2 + TSS region transcription start site region 79822
Cpgi21205 8 121752886 to 121753900 1014 CpG island CpG island 21205