Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:120337240-124277268

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931 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gse1 8 120228827 to 120581383 352556 + protein coding gene genetic suppressor element 1, coiled-coil protein
Gm32968 8 120327675 to 120339024 11349 + lncRNA gene predicted gene, 32968
Gm39264 8 120342211 to 120345258 3047 - lncRNA gene predicted gene, 39264
Tssr79749 8 120343855 to 120343893 38 + TSS region transcription start site region 79749
Tssr79750 8 120369154 to 120369176 22 + TSS region transcription start site region 79750
Tssr79751 8 120372317 to 120372329 12 + TSS region transcription start site region 79751
Cpgi21142 8 120393984 to 120394181 197 CpG island CpG island 21142
Cpgi21143 8 120399437 to 120399794 357 CpG island CpG island 21143
Tssr83191 8 120419947 to 120419953 6 - TSS region transcription start site region 83191
Tssr83192 8 120428282 to 120428287 5 - TSS region transcription start site region 83192
Gm22715 8 120443459 to 120443549 90 - miRNA gene predicted gene, 22715
Tssr79752 8 120464486 to 120464490 4 + TSS region transcription start site region 79752
Cpgi21144 8 120486474 to 120488401 1927 CpG island CpG island 21144
Tssr79753 8 120487148 to 120487165 17 + TSS region transcription start site region 79753
Tssr79754 8 120487614 to 120487649 35 + TSS region transcription start site region 79754
Tssr79755 8 120487652 to 120487666 14 + TSS region transcription start site region 79755
Tssr79756 8 120488179 to 120488200 21 + TSS region transcription start site region 79756
Tssr79757 8 120488206 to 120488225 19 + TSS region transcription start site region 79757
Tssr79758 8 120488232 to 120488241 9 + TSS region transcription start site region 79758
Tssr79759 8 120488416 to 120488490 74 + TSS region transcription start site region 79759
Tssr79760 8 120488491 to 120488510 19 + TSS region transcription start site region 79760
Tssr79761 8 120488542 to 120488569 27 + TSS region transcription start site region 79761
Tssr79762 8 120488730 to 120488748 18 + TSS region transcription start site region 79762
Tssr79763 8 120488752 to 120488803 51 + TSS region transcription start site region 79763
Cpgi21145 8 120488764 to 120490193 1429 CpG island CpG island 21145
Tssr79764 8 120488821 to 120488840 19 + TSS region transcription start site region 79764
Tssr79765 8 120489053 to 120489067 14 + TSS region transcription start site region 79765
Tssr83193 8 120489332 to 120489344 12 - TSS region transcription start site region 83193
Tssr83194 8 120489428 to 120489453 25 - TSS region transcription start site region 83194
Cpgi21146 8 120494825 to 120495111 286 CpG island CpG island 21146
Cpgi21147 8 120496559 to 120496823 264 CpG island CpG island 21147
Cpgi21148 8 120505236 to 120505409 173 CpG island CpG island 21148
Tssr79766 8 120506012 to 120506023 11 + TSS region transcription start site region 79766
Gm26971 8 120520615 to 120521686 1071 + sense intronic lncRNA gene predicted gene, 26971
Tssr79767 8 120522463 to 120522489 26 + TSS region transcription start site region 79767
Tssr79768 8 120525351 to 120525371 20 + TSS region transcription start site region 79768
Tssr83195 8 120532597 to 120532638 41 - TSS region transcription start site region 83195
Cpgi21149 8 120532863 to 120533082 219 CpG island CpG island 21149
Cpgi21150 8 120535010 to 120539245 4235 CpG island CpG island 21150
Tssr79769 8 120535723 to 120535734 11 + TSS region transcription start site region 79769
Tssr79770 8 120535789 to 120535867 78 + TSS region transcription start site region 79770
Tssr79771 8 120536559 to 120536573 14 + TSS region transcription start site region 79771
1700016A09Rik 8 120536892 to 120537726 834 - unclassified gene RIKEN cDNA 1700016A09 gene
Tssr83196 8 120537264 to 120537276 12 - TSS region transcription start site region 83196
Tssr79772 8 120537363 to 120537393 30 + TSS region transcription start site region 79772
Tssr79773 8 120537423 to 120537445 22 + TSS region transcription start site region 79773
Tssr79774 8 120537447 to 120537471 24 + TSS region transcription start site region 79774
Tssr79775 8 120537472 to 120537501 29 + TSS region transcription start site region 79775
Tssr79776 8 120537505 to 120537512 7 + TSS region transcription start site region 79776
Tssr83197 8 120537572 to 120537579 7 - TSS region transcription start site region 83197
Tssr83198 8 120537642 to 120537658 16 - TSS region transcription start site region 83198
Tssr83199 8 120537664 to 120537692 28 - TSS region transcription start site region 83199
Tssr83200 8 120537766 to 120537782 16 - TSS region transcription start site region 83200
Tssr83201 8 120538647 to 120538666 19 - TSS region transcription start site region 83201
Mir7687 8 120538696 to 120538754 58 + miRNA gene microRNA 7687
Cpgi21151 8 120548439 to 120548686 247 CpG island CpG island 21151
Tssr79777 8 120549290 to 120549292 2 + TSS region transcription start site region 79777
Cpgi21152 8 120549467 to 120549790 323 CpG island CpG island 21152
Cpgi21153 8 120554739 to 120554932 193 CpG island CpG island 21153
Cpgi21154 8 120572592 to 120572900 308 CpG island CpG island 21154
Cpgi21155 8 120577886 to 120578085 199 CpG island CpG island 21155
Gins2 8 120581266 to 120589075 7809 - protein coding gene GINS complex subunit 2 (Psf2 homolog)
Cpgi21156 8 120588661 to 120589673 1012 CpG island CpG island 21156
Tssr83202 8 120589019 to 120589050 31 - TSS region transcription start site region 83202
Tssr83203 8 120589059 to 120589068 9 - TSS region transcription start site region 83203
Tssr83204 8 120589071 to 120589080 9 - TSS region transcription start site region 83204
Tssr83205 8 120589081 to 120589090 9 - TSS region transcription start site region 83205
Gm10614 8 120589531 to 120593801 4270 + bidirectional promoter lncRNA gene predicted gene 10614
Gm45834 8 120597110 to 120597563 453 - pseudogene predicted gene 45834
Cpgi21157 8 120598463 to 120598915 452 CpG island CpG island 21157
Gm26739 8 120598552 to 120599277 725 + lincRNA gene predicted gene, 26739
1190005I06Rik 8 120608602 to 120634382 25780 - protein coding gene RIKEN cDNA 1190005I06 gene
Cpgi21158 8 120608628 to 120608971 343 CpG island CpG island 21158
Gm27021 8 120608786 to 120668079 59293 - protein coding gene predicted gene, 27021
Tssr79778 8 120627469 to 120627475 6 + TSS region transcription start site region 79778
Gm33075 8 120628524 to 120632471 3947 + lncRNA gene predicted gene, 33075
Tssr83206 8 120628570 to 120628577 7 - TSS region transcription start site region 83206
Tssr83207 8 120628612 to 120628621 9 - TSS region transcription start site region 83207
Tssr79779 8 120628698 to 120628711 13 + TSS region transcription start site region 79779
Tssr79780 8 120628723 to 120628728 5 + TSS region transcription start site region 79780
Cpgi21159 8 120633561 to 120634810 1249 CpG island CpG island 21159
Tssr83208 8 120634358 to 120634374 16 - TSS region transcription start site region 83208
Tssr83209 8 120634379 to 120634398 19 - TSS region transcription start site region 83209
Gm26537 8 120643950 to 120653687 9737 + antisense lncRNA gene predicted gene, 26537
Emc8 8 120653914 to 120668112 14198 - protein coding gene ER membrane protein complex subunit 8
Cpgi21160 8 120667535 to 120669052 1517 CpG island CpG island 21160
Tssr83210 8 120668030 to 120668056 26 - TSS region transcription start site region 83210
Tssr83211 8 120668058 to 120668098 40 - TSS region transcription start site region 83211
Tssr83212 8 120668124 to 120668133 9 - TSS region transcription start site region 83212
Cox4i1 8 120668225 to 120674209 5984 + protein coding gene cytochrome c oxidase subunit 4I1
Tssr79781 8 120668265 to 120668268 3 + TSS region transcription start site region 79781
Tssr79782 8 120668281 to 120668299 18 + TSS region transcription start site region 79782
Tssr79783 8 120668312 to 120668318 6 + TSS region transcription start site region 79783
Tssr79784 8 120669297 to 120669321 24 + TSS region transcription start site region 79784
Tssr79785 8 120672732 to 120672762 30 + TSS region transcription start site region 79785
Tssr79786 8 120685380 to 120685410 30 + TSS region transcription start site region 79786
Gm33142 8 120685399 to 120686265 866 + unclassified non-coding RNA gene predicted gene, 33142
Tssr79787 8 120685843 to 120685870 27 + TSS region transcription start site region 79787
Gm39265 8 120686054 to 120701181 15127 - lncRNA gene predicted gene, 39265
Tssr79788 8 120697716 to 120697721 5 + TSS region transcription start site region 79788
Tssr83213 8 120716085 to 120716100 15 - TSS region transcription start site region 83213
Gm24239 8 120717500 to 120717754 254 - unclassified non-coding RNA gene predicted gene, 24239
Gm18709 8 120727263 to 120727943 680 + pseudogene predicted gene, 18709
Cpgi21161 8 120735652 to 120736708 1056 CpG island CpG island 21161
Tssr79789 8 120736352 to 120736364 12 + TSS region transcription start site region 79789
Irf8 8 120736358 to 120756694 20336 + protein coding gene interferon regulatory factor 8
Tssr79790 8 120736490 to 120736501 11 + TSS region transcription start site region 79790
Tssr79791 8 120739660 to 120739675 15 + TSS region transcription start site region 79791
Tssr79792 8 120739833 to 120739857 24 + TSS region transcription start site region 79792
Tssr79793 8 120744804 to 120744810 6 + TSS region transcription start site region 79793
Tssr79794 8 120756305 to 120756346 41 + TSS region transcription start site region 79794
Gm39266 8 120767475 to 120770229 2754 - lncRNA gene predicted gene, 39266
D8Mit55 8 120785201 to 120785344 143 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 55
Gm33199 8 120786929 to 120795374 8445 + lncRNA gene predicted gene, 33199
Tssr79795 8 120832952 to 120832954 2 + TSS region transcription start site region 79795
Cpgi21162 8 120847871 to 120848052 181 CpG island CpG island 21162
Gm39267 8 120851385 to 120867621 16236 - lncRNA gene predicted gene, 39267
Gm33368 8 120868990 to 120874597 5607 - lncRNA gene predicted gene, 33368
Gm26878 8 120879399 to 120881217 1818 + lincRNA gene predicted gene, 26878
Cpgi21163 8 120883341 to 120883674 333 CpG island CpG island 21163
Cpgi21164 8 120887422 to 120887685 263 CpG island CpG island 21164
Cpgi21165 8 120900481 to 120900867 386 CpG island CpG island 21165
Gm33471 8 120917008 to 120919697 2689 + lncRNA gene predicted gene, 33471
Cpgi21166 8 120971997 to 120972561 564 CpG island CpG island 21166
Gm28324 8 121002927 to 121003190 263 + lincRNA gene predicted gene 28324
Gm33579 8 121016513 to 121023617 7104 - lncRNA gene predicted gene, 33579
Cpgi21167 8 121016632 to 121016989 357 CpG island CpG island 21167
Gm46071 8 121035751 to 121037957 2206 - lncRNA gene predicted gene, 46071
Cpgi21168 8 121043372 to 121043729 357 CpG island CpG island 21168
Fendrr 8 121054882 to 121083110 28228 - lncRNA gene Foxf1 adjacent non-coding developmental regulatory RNA
Cpgi21169 8 121063716 to 121063887 171 CpG island CpG island 21169
Tssr83214 8 121070300 to 121070323 23 - TSS region transcription start site region 83214
Cpgi21170 8 121071529 to 121071694 165 CpG island CpG island 21170
Cpgi21171 8 121073480 to 121074034 554 CpG island CpG island 21171
Tssr79796 8 121079479 to 121079485 6 + TSS region transcription start site region 79796
Cpgi21172 8 121080209 to 121081235 1026 CpG island CpG island 21172
Cpgi21173 8 121082307 to 121085419 3112 CpG island CpG island 21173
Tssr83215 8 121083023 to 121083050 27 - TSS region transcription start site region 83215
Tssr83216 8 121083052 to 121083083 31 - TSS region transcription start site region 83216
Tssr83217 8 121083085 to 121083153 68 - TSS region transcription start site region 83217
Tssr83218 8 121083166 to 121083191 25 - TSS region transcription start site region 83218
Tssr79797 8 121083330 to 121083340 10 + TSS region transcription start site region 79797
Tssr79798 8 121083838 to 121083859 21 + TSS region transcription start site region 79798
Tssr83219 8 121083916 to 121083934 18 - TSS region transcription start site region 83219
Tssr83220 8 121083949 to 121083972 23 - TSS region transcription start site region 83220
Tssr79799 8 121084334 to 121084341 7 + TSS region transcription start site region 79799
Tssr79800 8 121084352 to 121084368 16 + TSS region transcription start site region 79800
Foxf1 8 121084386 to 121088144 3758 + protein coding gene forkhead box F1
Gm27530 8 121084609 to 121084706 97 - miRNA gene predicted gene, 27530
Cpgi21174 8 121088722 to 121090030 1308 CpG island CpG island 21174
Cpgi21175 8 121092853 to 121093088 235 CpG island CpG island 21175
Mthfsd 8 121097555 to 121108415 10860 - protein coding gene methenyltetrahydrofolate synthetase domain containing
Cpgi21176 8 121107724 to 121108768 1044 CpG island CpG island 21176
Tssr83221 8 121108301 to 121108359 58 - TSS region transcription start site region 83221
Tssr83222 8 121108361 to 121108406 45 - TSS region transcription start site region 83222
Cpgi21177 8 121113307 to 121113690 383 CpG island CpG island 21177
Cpgi21178 8 121114803 to 121115501 698 CpG island CpG island 21178
Cpgi21179 8 121116031 to 121118330 2299 CpG island CpG island 21179
Tssr79801 8 121116163 to 121116177 14 + TSS region transcription start site region 79801
Foxc2 8 121116171 to 121118895 2724 + protein coding gene forkhead box C2
Tssr79802 8 121116190 to 121116201 11 + TSS region transcription start site region 79802
Tssr79803 8 121116866 to 121116872 6 + TSS region transcription start site region 79803
Tssr79804 8 121118325 to 121118332 7 + TSS region transcription start site region 79804
Cpgi21180 8 121125286 to 121125901 615 CpG island CpG island 21180
Tssr83223 8 121125635 to 121125640 5 - TSS region transcription start site region 83223
Cpgi21181 8 121127732 to 121129407 1675 CpG island CpG island 21181
Tssr79805 8 121127827 to 121127848 21 + TSS region transcription start site region 79805
Foxl1 8 121127940 to 121130644 2704 + protein coding gene forkhead box L1
Gm37609 8 121140943 to 121141620 677 + unclassified gene predicted gene, 37609
Gm33633 8 121166916 to 121168363 1447 - lncRNA gene predicted gene, 33633
Cpgi21182 8 121170681 to 121170875 194 CpG island CpG island 21182
Gm42046 8 121172324 to 121183403 11079 + lncRNA gene predicted gene, 42046
5033426O07Rik 8 121198714 to 121203496 4782 - lincRNA gene RIKEN cDNA 5033426O07 gene
Cpgi21183 8 121213174 to 121213564 390 CpG island CpG island 21183
Gm33739 8 121213807 to 121222717 8910 + lncRNA gene predicted gene, 33739
Cpgi21184 8 121220574 to 121220785 211 CpG island CpG island 21184
D8Mit169 8 121232856 to 121232998 142 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 169
Gm26815 8 121256747 to 121356836 100089 - lincRNA gene predicted gene, 26815
Gm33823 8 121261747 to 121264665 2918 - lncRNA gene predicted gene, 33823
Cpgi21185 8 121272549 to 121273335 786 CpG island CpG island 21185
Cpgi21186 8 121290701 to 121290859 158 CpG island CpG island 21186
Cpgi21187 8 121293916 to 121294534 618 CpG island CpG island 21187
D8Mit36 8 121307238 to 121307371 133 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 36
Sluc38a 8 121307238 to 121307371 133 QTL susceptibility to lung cancer 38a
Sluc38 8 121307238 to 121307371 133 QTL susceptibility to lung cancer 38
Cpgi21188 8 121311004 to 121311209 205 CpG island CpG island 21188
Tssr79806 8 121421208 to 121421218 10 + TSS region transcription start site region 79806
Gm26747 8 121421238 to 121428043 6805 + lincRNA gene predicted gene, 26747
Gm26784 8 121434980 to 121435389 409 + lincRNA gene predicted gene, 26784
Cpgi21189 8 121454864 to 121455121 257 CpG island CpG island 21189
Cpgi21190 8 121468152 to 121468498 346 CpG island CpG island 21190
Cpgi21191 8 121480565 to 121480868 303 CpG island CpG island 21191
Cpgi21192 8 121484644 to 121485078 434 CpG island CpG island 21192
1700018B08Rik 8 121530780 to 121544320 13540 - protein coding gene RIKEN cDNA 1700018B08 gene
Cpgi21193 8 121541768 to 121542202 434 CpG island CpG island 21193
Tssr83224 8 121541939 to 121541946 7 - TSS region transcription start site region 83224
Tssr83225 8 121541962 to 121541974 12 - TSS region transcription start site region 83225
Tssr79807 8 121542065 to 121542072 7 + TSS region transcription start site region 79807
Tssr79808 8 121542080 to 121542087 7 + TSS region transcription start site region 79808
Gm27045 8 121542080 to 121543481 1401 + bidirectional promoter lncRNA gene predicted gene, 27045