Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:119471517-119661525

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Necab2 8 119446719 to 119472640 25921 + protein coding gene N-terminal EF-hand calcium binding protein 2
Slc38a8 8 119479602 to 119501698 22096 - protein coding gene solute carrier family 38, member 8
Tssr83124 8 119501698 to 119501726 28 - TSS region transcription start site region 83124
Tssr83125 8 119501761 to 119501766 5 - TSS region transcription start site region 83125
Mbtps1 8 119508156 to 119558735 50579 - protein coding gene membrane-bound transcription factor peptidase, site 1
Tssr83126 8 119545080 to 119545083 3 - TSS region transcription start site region 83126
Cpgi21115 8 119557974 to 119559328 1354 CpG island CpG island 21115
Tssr83127 8 119558412 to 119558462 50 - TSS region transcription start site region 83127
Tssr83128 8 119558468 to 119558488 20 - TSS region transcription start site region 83128
Tssr83129 8 119558681 to 119558692 11 - TSS region transcription start site region 83129
Tssr83130 8 119558699 to 119558711 12 - TSS region transcription start site region 83130
Tssr83131 8 119558718 to 119558766 48 - TSS region transcription start site region 83131
Tssr83132 8 119558794 to 119558807 13 - TSS region transcription start site region 83132
Tssr79702 8 119558973 to 119558979 6 + TSS region transcription start site region 79702
Hsdl1 8 119561989 to 119575183 13194 - protein coding gene hydroxysteroid dehydrogenase like 1
Tssr83133 8 119563723 to 119563727 4 - TSS region transcription start site region 83133
Tssr83134 8 119566517 to 119566525 8 - TSS region transcription start site region 83134
Tssr83135 8 119570024 to 119570035 11 - TSS region transcription start site region 83135
Tssr83136 8 119570079 to 119570091 12 - TSS region transcription start site region 83136
Tssr83137 8 119572080 to 119572091 11 - TSS region transcription start site region 83137
Cpgi21116 8 119574193 to 119575711 1518 CpG island CpG island 21116
Tssr83138 8 119574522 to 119574533 11 - TSS region transcription start site region 83138
Tssr83139 8 119574821 to 119574833 12 - TSS region transcription start site region 83139
Tssr83140 8 119574840 to 119574851 11 - TSS region transcription start site region 83140
Tssr83141 8 119574914 to 119574927 13 - TSS region transcription start site region 83141
Tssr83142 8 119574930 to 119574970 40 - TSS region transcription start site region 83142
Tssr83143 8 119574973 to 119574984 11 - TSS region transcription start site region 83143
Tssr83144 8 119575127 to 119575138 11 - TSS region transcription start site region 83144
Tssr83145 8 119575143 to 119575205 62 - TSS region transcription start site region 83145
Dnaaf1 8 119575235 to 119598454 23219 + protein coding gene dynein, axonemal assembly factor 1
Tssr79703 8 119575262 to 119575340 78 + TSS region transcription start site region 79703
Tssr79704 8 119575354 to 119575361 7 + TSS region transcription start site region 79704
Tssr83146 8 119585821 to 119585851 30 - TSS region transcription start site region 83146
Cpgi21117 8 119585998 to 119586293 295 CpG island CpG island 21117
Tssr83147 8 119586116 to 119586122 6 - TSS region transcription start site region 83147
Taf1c 8 119597974 to 119605240 7266 - protein coding gene TATA-box binding protein associated factor, RNA polymerase I, C
Rps13-ps4 8 119602170 to 119602625 455 - pseudogene ribosomal protein S13, pseudogene 4
Cpgi21118 8 119604679 to 119605586 907 CpG island CpG island 21118
Tssr83148 8 119605199 to 119605213 14 - TSS region transcription start site region 83148
Cpgi21119 8 119612462 to 119612896 434 CpG island CpG island 21119
Tssr79705 8 119612701 to 119612732 31 + TSS region transcription start site region 79705
Adad2 8 119612747 to 119616924 4177 + protein coding gene adenosine deaminase domain containing 2
Kcng4 8 119623854 to 119635680 11826 - protein coding gene potassium voltage-gated channel, subfamily G, member 4
Cpgi21120 8 119625705 to 119626340 635 CpG island CpG island 21120
Tssr83149 8 119625915 to 119625943 28 - TSS region transcription start site region 83149
Gm46055 8 119631151 to 119632876 1725 - lncRNA gene predicted gene, 46055
Cpgi21121 8 119632858 to 119633577 719 CpG island CpG island 21121
Tssr83150 8 119635467 to 119635478 11 - TSS region transcription start site region 83150
Tssr83151 8 119635491 to 119635505 14 - TSS region transcription start site region 83151
Tssr83152 8 119635511 to 119635536 25 - TSS region transcription start site region 83152
Tssr83153 8 119635553 to 119635575 22 - TSS region transcription start site region 83153
Gm46054 8 119635818 to 119646868 11050 + lncRNA gene predicted gene, 46054
Gm32352 8 119659475 to 119670881 11406 - antisense lncRNA gene predicted gene, 32352
Tssr83154 8 119661301 to 119661334 33 - TSS region transcription start site region 83154