Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:11759677-12869681

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123 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arhgef7 8 11728105 to 11835219 107114 + protein coding gene Rho guanine nucleotide exchange factor (GEF7)
Gm46031 8 11750648 to 11772803 22155 - lncRNA gene predicted gene, 46031
Tssr76244 8 11779213 to 11779224 11 + TSS region transcription start site region 76244
Tssr76245 8 11779275 to 11779294 19 + TSS region transcription start site region 76245
Tssr76246 8 11782453 to 11782481 28 + TSS region transcription start site region 76246
Tssr76247 8 11797374 to 11797387 13 + TSS region transcription start site region 76247
Tssr76248 8 11797411 to 11797448 37 + TSS region transcription start site region 76248
Tssr76249 8 11798720 to 11798730 10 + TSS region transcription start site region 76249
Tssr76250 8 11810325 to 11810350 25 + TSS region transcription start site region 76250
Tssr76251 8 11812381 to 11812385 4 + TSS region transcription start site region 76251
Tssr76252 8 11822306 to 11822310 4 + TSS region transcription start site region 76252
Gm15875 8 11838978 to 11840400 1422 - bidirectional promoter lncRNA gene predicted gene 15875
Tex29 8 11840488 to 11855761 15273 + protein coding gene testis expressed 29
Tssr76253 8 11840501 to 11840508 7 + TSS region transcription start site region 76253
Tssr76254 8 11840514 to 11840530 16 + TSS region transcription start site region 76254
Tssr76255 8 11840568 to 11840579 11 + TSS region transcription start site region 76255
Tssr76256 8 11854331 to 11854335 4 + TSS region transcription start site region 76256
Gm39132 8 11874159 to 11894113 19954 + lincRNA gene predicted gene, 39132
Cpgi20090 8 11912956 to 11913159 203 CpG island CpG island 20090
Tssr76257 8 11912972 to 11913001 29 + TSS region transcription start site region 76257
Tssr76258 8 11913012 to 11913024 12 + TSS region transcription start site region 76258
Tssr76259 8 11913122 to 11913136 14 + TSS region transcription start site region 76259
Gm45680 8 11945465 to 11948297 2832 - lincRNA gene predicted gene 45680
Tssr80399 8 11948314 to 11948318 4 - TSS region transcription start site region 80399
B020031H02Rik 8 11948339 to 12000216 51877 + lincRNA gene RIKEN cDNA B020031H02 gene
Tssr76260 8 11952589 to 11952624 35 + TSS region transcription start site region 76260
Tssr76261 8 11952654 to 11952679 25 + TSS region transcription start site region 76261
Tssr76262 8 11952680 to 11952690 10 + TSS region transcription start site region 76262
Gm18318 8 11960969 to 11961515 546 - pseudogene predicted gene, 18318
D8Mit123 8 12170146 to 12170257 111 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 123
D8Mit202 8 12214666 to 12214771 105 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 202
Gm33029 8 12234676 to 12239916 5240 - lncRNA gene predicted gene, 33029
A230072I06Rik 8 12278819 to 12280657 1838 + unclassified gene RIKEN cDNA A230072I06 gene
Gm29175 8 12282211 to 12282612 401 + lincRNA gene predicted gene 29175
Tssr2490 8 12314677 to 12314681 4 + TSS region transcription start site region 2490
Gm33175 8 12315004 to 12319480 4476 - lincRNA gene predicted gene, 33175
Tssr76263 8 12323644 to 12323659 15 + TSS region transcription start site region 76263
Tssr76264 8 12323660 to 12323675 15 + TSS region transcription start site region 76264
Tssr76265 8 12323837 to 12323844 7 + TSS region transcription start site region 76265
Gm22207 8 12356153 to 12356469 316 + unclassified non-coding RNA gene predicted gene, 22207
Cpgi20091 8 12384804 to 12387145 2341 CpG island CpG island 20091
Tssr76266 8 12385739 to 12385750 11 + TSS region transcription start site region 76266
Tssr76267 8 12385751 to 12385766 15 + TSS region transcription start site region 76267
Tssr76268 8 12385769 to 12385780 11 + TSS region transcription start site region 76268
Sox1ot 8 12385771 to 12436732 50961 + sense overlapping lncRNA gene Sox1 overlapping transcript
Tssr2491 8 12385806 to 12385809 3 + TSS region transcription start site region 2491
Gm45560 8 12390168 to 12391639 1471 + unclassified gene predicted gene 45560
Cpgi20092 8 12390254 to 12390841 587 CpG island CpG island 20092
Cpgi20093 8 12391481 to 12391954 473 CpG island CpG island 20093
Cpgi20094 8 12394834 to 12397978 3144 CpG island CpG island 20094
Tssr76269 8 12395287 to 12395295 8 + TSS region transcription start site region 76269
Tssr76270 8 12395500 to 12395511 11 + TSS region transcription start site region 76270
Sox1 8 12395519 to 12399555 4036 + protein coding gene SRY (sex determining region Y)-box 1
Tssr76271 8 12395526 to 12395531 5 + TSS region transcription start site region 76271
Tssr76272 8 12395603 to 12395621 18 + TSS region transcription start site region 76272
Tssr76273 8 12395629 to 12395644 15 + TSS region transcription start site region 76273
Tssr76274 8 12395670 to 12395682 12 + TSS region transcription start site region 76274
Tssr76275 8 12395843 to 12395852 9 + TSS region transcription start site region 76275
Tssr76276 8 12395874 to 12395885 11 + TSS region transcription start site region 76276
Tssr76277 8 12395892 to 12395919 27 + TSS region transcription start site region 76277
Tssr76278 8 12396116 to 12396127 11 + TSS region transcription start site region 76278
Tssr76279 8 12396205 to 12396222 17 + TSS region transcription start site region 76279
Tssr76280 8 12396267 to 12396279 12 + TSS region transcription start site region 76280
Tssr76281 8 12396320 to 12396363 43 + TSS region transcription start site region 76281
Gm25239 8 12396403 to 12396488 85 + miRNA gene predicted gene, 25239
Cpgi20095 8 12400882 to 12401963 1081 CpG island CpG island 20095
Cpgi20096 8 12428394 to 12428556 162 CpG island CpG island 20096
Cpgi20097 8 12430168 to 12431540 1372 CpG island CpG island 20097
Tssr80400 8 12439171 to 12439213 42 - TSS region transcription start site region 80400
Tssr76282 8 12439344 to 12439357 13 + TSS region transcription start site region 76282
Tssr76283 8 12439360 to 12439379 19 + TSS region transcription start site region 76283
Cpgi20098 8 12446321 to 12446611 290 CpG island CpG island 20098
D8Mit142 8 12449265 to 12449413 148 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 142
Tssr76284 8 12457240 to 12457265 25 + TSS region transcription start site region 76284
Tssr80401 8 12458016 to 12458024 8 - TSS region transcription start site region 80401
Gm33326 8 12461419 to 12466964 5545 - lincRNA gene predicted gene, 33326
Tssr80402 8 12466875 to 12466923 48 - TSS region transcription start site region 80402
Tssr80403 8 12466958 to 12466966 8 - TSS region transcription start site region 80403
Cpgi20099 8 12467811 to 12468035 224 CpG island CpG island 20099
Gm33532 8 12472134 to 12474458 2324 - lncRNA gene predicted gene, 33532
Cpgi20100 8 12477905 to 12478345 440 CpG island CpG island 20100
Tssr80404 8 12478131 to 12478150 19 - TSS region transcription start site region 80404
Cpgi20101 8 12502303 to 12502854 551 CpG island CpG island 20101
4933439N14Rik 8 12502899 to 12505341 2442 + lincRNA gene RIKEN cDNA 4933439N14 gene
D8Ertd67e 8 12538948 to 12539197 249 DNA segment DNA segment, Chr 8, ERATO Doi 67, expressed
D630011A20Rik 8 12554272 to 12573320 19048 - bidirectional promoter lncRNA gene RIKEN cDNA D630011A20 gene
Cpgi20102 8 12563044 to 12563292 248 CpG island CpG island 20102
D8Mit141 8 12566166 to 12566402 236 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 141
Tssr76285 8 12572820 to 12572831 11 + TSS region transcription start site region 76285
Tssr76286 8 12573017 to 12573060 43 + TSS region transcription start site region 76286
Spaca7 8 12573029 to 12600744 27715 + protein coding gene sperm acrosome associated 7
Tssr76287 8 12573064 to 12573076 12 + TSS region transcription start site region 76287
Tssr80405 8 12573205 to 12573262 57 - TSS region transcription start site region 80405
Tssr80406 8 12573279 to 12573290 11 - TSS region transcription start site region 80406
Tssr80407 8 12573311 to 12573336 25 - TSS region transcription start site region 80407
Tssr76288 8 12589197 to 12589201 4 + TSS region transcription start site region 76288
Tubgcp3 8 12614277 to 12672243 57966 - protein coding gene tubulin, gamma complex associated protein 3
Tssr2492 8 12647192 to 12647194 2 + TSS region transcription start site region 2492
Gm26483 8 12666095 to 12666198 103 + miRNA gene predicted gene, 26483
Cpgi20103 8 12671591 to 12672735 1144 CpG island CpG island 20103
Tssr80408 8 12672099 to 12672132 33 - TSS region transcription start site region 80408
Tssr80409 8 12672135 to 12672146 11 - TSS region transcription start site region 80409
4931415C17Rik 8 12672391 to 12679238 6847 + lncRNA gene RIKEN cDNA 4931415C17 gene
Tssr2493 8 12672426 to 12672457 31 + TSS region transcription start site region 2493
2810487C13Rik 8 12674307 to 12675247 940 unclassified gene RIKEN cDNA 2810487C13 gene
Gm15348 8 12706944 to 12719127 12183 - lincRNA gene predicted gene 15348
Gm39133 8 12749201 to 12751308 2107 + lncRNA gene predicted gene, 39133
Gm33587 8 12753823 to 12756988 3165 - lncRNA gene predicted gene, 33587
Cpgi20104 8 12756462 to 12757942 1480 CpG island CpG island 20104
Tssr2494 8 12756790 to 12756833 43 - TSS region transcription start site region 2494
Tssr76289 8 12757002 to 12757027 25 + TSS region transcription start site region 76289
Atp11a 8 12757016 to 12868728 111712 + protein coding gene ATPase, class VI, type 11A
Tssr76290 8 12757030 to 12757065 35 + TSS region transcription start site region 76290
Tssr76291 8 12757078 to 12757089 11 + TSS region transcription start site region 76291
Tssr76292 8 12762645 to 12762657 12 + TSS region transcription start site region 76292
Tssr80410 8 12779619 to 12779623 4 - TSS region transcription start site region 80410
Tssr76293 8 12826193 to 12826215 22 + TSS region transcription start site region 76293
Gm15350 8 12828338 to 12831919 3581 - antisense lncRNA gene predicted gene 15350
Tssr80411 8 12831909 to 12831927 18 - TSS region transcription start site region 80411
Tssr76294 8 12842843 to 12842886 43 + TSS region transcription start site region 76294
Gm15347 8 12860358 to 12877344 16986 - antisense lncRNA gene predicted gene 15347
Tssr76295 8 12866646 to 12866661 15 + TSS region transcription start site region 76295
Tssr76296 8 12867112 to 12867116 4 + TSS region transcription start site region 76296