Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:117460425-121230435

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518 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr79625 8 117460526 to 117460540 14 + TSS region transcription start site region 79625
Tssr79626 8 117460599 to 117460647 48 + TSS region transcription start site region 79626
Tssr79627 8 117460731 to 117460757 26 + TSS region transcription start site region 79627
Tssr79628 8 117460795 to 117460812 17 + TSS region transcription start site region 79628
Tssr79629 8 117460856 to 117460881 25 + TSS region transcription start site region 79629
Tssr79630 8 117460949 to 117460989 40 + TSS region transcription start site region 79630
Tssr79631 8 117461064 to 117461095 31 + TSS region transcription start site region 79631
Tssr79632 8 117461101 to 117461127 26 + TSS region transcription start site region 79632
Tssr79633 8 117461139 to 117461158 19 + TSS region transcription start site region 79633
Tssr79634 8 117461183 to 117461230 47 + TSS region transcription start site region 79634
Tssr83098 8 117461248 to 117461266 18 - TSS region transcription start site region 83098
Tssr83099 8 117461496 to 117461503 7 - TSS region transcription start site region 83099
Cpgi21099 8 117470295 to 117470543 248 CpG island CpG island 21099
Tssr83100 8 117480166 to 117480169 3 - TSS region transcription start site region 83100
Cpgi21100 8 117498103 to 117498917 814 CpG island CpG island 21100
Tssr79635 8 117498251 to 117498264 13 + TSS region transcription start site region 79635
Tssr79636 8 117498272 to 117498291 19 + TSS region transcription start site region 79636
Plcg2 8 117498291 to 117635142 136851 + protein coding gene phospholipase C, gamma 2
Tssr79637 8 117498293 to 117498318 25 + TSS region transcription start site region 79637
Tssr79638 8 117504001 to 117504007 6 + TSS region transcription start site region 79638
Gm27361 8 117546972 to 117547026 54 - miRNA gene predicted gene, 27361
Tssr79639 8 117548907 to 117548919 12 + TSS region transcription start site region 79639
Cpgi21101 8 117589967 to 117590344 377 CpG island CpG island 21101
Tssr79640 8 117595163 to 117595169 6 + TSS region transcription start site region 79640
D8Mit216 8 117608477 to 117608587 110 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 216
D8Mit276 8 117626099 to 117626309 210 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 276
Cpgi21102 8 117634825 to 117634988 163 CpG island CpG island 21102
Sdr42e1 8 117661399 to 117673689 12290 - protein coding gene short chain dehydrogenase/reductase family 42E, member 1
Cpgi21103 8 117663536 to 117663737 201 CpG island CpG island 21103
Tssr83101 8 117671260 to 117671271 11 - TSS region transcription start site region 83101
Tssr83102 8 117671501 to 117671523 22 - TSS region transcription start site region 83102
Tssr83103 8 117671526 to 117671555 29 - TSS region transcription start site region 83103
Cpgi21104 8 117673378 to 117673670 292 CpG island CpG island 21104
Tssr83104 8 117673632 to 117673655 23 - TSS region transcription start site region 83104
Tssr83105 8 117673663 to 117673674 11 - TSS region transcription start site region 83105
Tssr83106 8 117673682 to 117673701 19 - TSS region transcription start site region 83106
Gm31717 8 117675815 to 117677209 1394 - lincRNA gene predicted gene, 31717
Gm38416 8 117681622 to 117693198 11576 + lincRNA gene predicted gene, 38416
Tssr83107 8 117692255 to 117692278 23 - TSS region transcription start site region 83107
Tssr83108 8 117692281 to 117692298 17 - TSS region transcription start site region 83108
Tssr79641 8 117701007 to 117701054 47 + TSS region transcription start site region 79641
Tssr79642 8 117701064 to 117701084 20 + TSS region transcription start site region 79642
Tssr79643 8 117701820 to 117701850 30 + TSS region transcription start site region 79643
Hsd17b2 8 117701904 to 117759027 57123 + protein coding gene hydroxysteroid (17-beta) dehydrogenase 2
Tssr79644 8 117701937 to 117701956 19 + TSS region transcription start site region 79644
Cpgi21105 8 117701990 to 117702159 169 CpG island CpG island 21105
Tssr79645 8 117702056 to 117702061 5 + TSS region transcription start site region 79645
Tssr79646 8 117702189 to 117702200 11 + TSS region transcription start site region 79646
Gm45776 8 117712570 to 117714091 1521 + unclassified gene predicted gene 45776
Tssr83109 8 117714219 to 117714227 8 - TSS region transcription start site region 83109
Tssr79647 8 117739066 to 117739067 1 + TSS region transcription start site region 79647
Gm31774 8 117746331 to 117748260 1929 - antisense lncRNA gene predicted gene, 31774
Tssr83110 8 117748253 to 117748262 9 - TSS region transcription start site region 83110
Gm39261 8 117761601 to 117776462 14861 - lncRNA gene predicted gene, 39261
Mphosph6 8 117791642 to 117801935 10293 - protein coding gene M phase phosphoprotein 6
Tssr2698 8 117794756 to 117794761 5 + TSS region transcription start site region 2698
Cpgi21106 8 117801492 to 117802779 1287 CpG island CpG island 21106
Tssr83111 8 117801903 to 117801949 46 - TSS region transcription start site region 83111
Tssr83112 8 117801962 to 117801973 11 - TSS region transcription start site region 83112
Gm10617 8 117802062 to 117803234 1172 + pseudogene predicted gene 10617
Cpgi21107 8 117806634 to 117806799 165 CpG island CpG island 21107
D8Ertd503e 8 117902039 to 117902248 209 DNA segment DNA segment, Chr 8, ERATO Doi 503, expressed
Tssr79648 8 117920079 to 117920089 10 + TSS region transcription start site region 79648
Cpgi21108 8 117934511 to 117934720 209 CpG island CpG island 21108
Gm39262 8 117944793 to 117948430 3637 - lncRNA gene predicted gene, 39262
Gm25200 8 118120954 to 118121083 129 + snoRNA gene predicted gene, 25200
Cpgi21109 8 118283561 to 118284689 1128 CpG island CpG island 21109
Tssr79649 8 118283588 to 118283602 14 + TSS region transcription start site region 79649
Tssr79650 8 118283607 to 118283618 11 + TSS region transcription start site region 79650
Tssr79651 8 118283623 to 118283633 10 + TSS region transcription start site region 79651
Tssr79652 8 118283653 to 118283664 11 + TSS region transcription start site region 79652
Tssr79653 8 118283719 to 118283738 19 + TSS region transcription start site region 79653
Cdh13 8 118283733 to 119324921 1041188 + protein coding gene cadherin 13
Tssr79654 8 118283744 to 118283767 23 + TSS region transcription start site region 79654
Tssr79655 8 118283789 to 118283803 14 + TSS region transcription start site region 79655
Tssr83113 8 118309056 to 118309060 4 - TSS region transcription start site region 83113
Tssr79656 8 118309403 to 118309424 21 + TSS region transcription start site region 79656
D8Mit120 8 118341509 to 118341638 129 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 120
Tssr79657 8 118354247 to 118354250 3 + TSS region transcription start site region 79657
Gm45722 8 118381726 to 118382191 465 - pseudogene predicted gene 45722
Gm24035 8 118426493 to 118426599 106 - snRNA gene predicted gene, 24035
Tssr2699 8 118438119 to 118438131 12 + TSS region transcription start site region 2699
Tssr79658 8 118443636 to 118443638 2 + TSS region transcription start site region 79658
Tssr83114 8 118465744 to 118465751 7 - TSS region transcription start site region 83114
Tssr79659 8 118470653 to 118470680 27 + TSS region transcription start site region 79659
Tssr79660 8 118549704 to 118549705 1 + TSS region transcription start site region 79660
Tssr79661 8 118561437 to 118561440 3 + TSS region transcription start site region 79661
D8Mit361 8 118591011 to 118591117 106 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 361
Gm45721 8 118607127 to 118610499 3372 - antisense lncRNA gene predicted gene 45721
Gm45720 8 118610989 to 118615879 4890 - antisense lncRNA gene predicted gene 45720
Cpgi21110 8 118638842 to 118639114 272 CpG island CpG island 21110
D8Mit322 8 118719348 to 118719453 105 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 322
Gm22999 8 118726900 to 118726987 87 + snoRNA gene predicted gene, 22999
Tssr79662 8 118733384 to 118733388 4 + TSS region transcription start site region 79662
D8Mit275 8 118734610 to 118734807 197 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 275
Cpgi21111 8 118753918 to 118754074 156 CpG island CpG island 21111
Tssr79663 8 118799386 to 118799394 8 + TSS region transcription start site region 79663
Tssr79664 8 118891176 to 118891182 6 + TSS region transcription start site region 79664
D8Mit362 8 118899638 to 118899763 125 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 362
Tssr83115 8 118906604 to 118906606 2 - TSS region transcription start site region 83115
Tssr79665 8 118970389 to 118970393 4 + TSS region transcription start site region 79665
D8Mit168 8 118985838 to 118985973 135 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 168
Gm31893 8 119052306 to 119058195 5889 - lncRNA gene predicted gene, 31893
Tssr79666 8 119062044 to 119062058 14 + TSS region transcription start site region 79666
Tssr79667 8 119086561 to 119086562 1 + TSS region transcription start site region 79667
Tssr79668 8 119095002 to 119095032 30 + TSS region transcription start site region 79668
Tssr2700 8 119213901 to 119213907 6 + TSS region transcription start site region 2700
Tssr79669 8 119277368 to 119277392 24 + TSS region transcription start site region 79669
Tssr79670 8 119277396 to 119277428 32 + TSS region transcription start site region 79670
Tssr79671 8 119277429 to 119277440 11 + TSS region transcription start site region 79671
D8Mit187 8 119319605 to 119319885 280 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 187
Cpgi21112 8 119344133 to 119344969 836 CpG island CpG island 21112
Tssr79672 8 119344472 to 119344483 11 + TSS region transcription start site region 79672
Tssr79673 8 119344490 to 119344536 46 + TSS region transcription start site region 79673
Hsbp1 8 119344538 to 119348929 4391 + protein coding gene heat shock factor binding protein 1
Tssr79674 8 119344540 to 119344551 11 + TSS region transcription start site region 79674
Tssr79675 8 119344717 to 119344731 14 + TSS region transcription start site region 79675
Tssr79676 8 119344749 to 119344761 12 + TSS region transcription start site region 79676
Tssr79677 8 119344932 to 119344973 41 + TSS region transcription start site region 79677
Tssr79678 8 119345239 to 119345260 21 + TSS region transcription start site region 79678
Tssr79679 8 119345425 to 119345435 10 + TSS region transcription start site region 79679
Tssr79680 8 119345621 to 119345632 11 + TSS region transcription start site region 79680
Tssr79681 8 119348124 to 119348189 65 + TSS region transcription start site region 79681
D8Mit274 8 119359466 to 119359708 242 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 274
Gm45723 8 119384389 to 119386392 2003 + lincRNA gene predicted gene 45723
Cpgi21113 8 119394508 to 119395819 1311 CpG island CpG island 21113
Tssr79682 8 119394866 to 119394954 88 + TSS region transcription start site region 79682
Mlycd 8 119394878 to 119411102 16224 + protein coding gene malonyl-CoA decarboxylase
Tssr79683 8 119404582 to 119404595 13 + TSS region transcription start site region 79683
Gm46053 8 119406544 to 119407549 1005 - lncRNA gene predicted gene, 46053
D8Mit188 8 119408978 to 119409127 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 188
Gm32006 8 119415104 to 119429070 13966 - lncRNA gene predicted gene, 32006
Tssr2701 8 119415987 to 119415990 3 + TSS region transcription start site region 2701
Tssr83116 8 119416918 to 119416928 10 - TSS region transcription start site region 83116
Tssr79684 8 119417378 to 119417394 16 + TSS region transcription start site region 79684
Tssr83117 8 119417982 to 119417990 8 - TSS region transcription start site region 83117
Tssr79685 8 119418952 to 119418957 5 + TSS region transcription start site region 79685
Tssr79686 8 119418983 to 119418987 4 + TSS region transcription start site region 79686
Tssr79687 8 119419013 to 119419018 5 + TSS region transcription start site region 79687
Tssr2702 8 119419027 to 119419032 5 + TSS region transcription start site region 2702
Tssr79688 8 119419041 to 119419052 11 + TSS region transcription start site region 79688
Tssr2703 8 119423988 to 119424003 15 + TSS region transcription start site region 2703
Tssr83118 8 119424330 to 119424343 13 - TSS region transcription start site region 83118
Tssr83119 8 119424344 to 119424362 18 - TSS region transcription start site region 83119
Tssr79689 8 119424461 to 119424481 20 + TSS region transcription start site region 79689
Tssr83120 8 119424969 to 119425002 33 - TSS region transcription start site region 83120
Tssr79690 8 119425903 to 119425931 28 + TSS region transcription start site region 79690
Tssr79691 8 119425936 to 119425958 22 + TSS region transcription start site region 79691
Tssr83121 8 119426580 to 119426593 13 - TSS region transcription start site region 83121
Tssr83122 8 119428928 to 119428937 9 - TSS region transcription start site region 83122
Tssr83123 8 119428989 to 119429023 34 - TSS region transcription start site region 83123
Osgin1 8 119434135 to 119446256 12121 + protein coding gene oxidative stress induced growth inhibitor 1
Tssr79692 8 119437092 to 119437133 41 + TSS region transcription start site region 79692
Tssr79693 8 119437139 to 119437154 15 + TSS region transcription start site region 79693
Tssr79694 8 119441397 to 119441418 21 + TSS region transcription start site region 79694
Tssr79695 8 119442478 to 119442512 34 + TSS region transcription start site region 79695
Cpgi21114 8 119446310 to 119448117 1807 CpG island CpG island 21114
Necab2 8 119446719 to 119472640 25921 + protein coding gene N-terminal EF-hand calcium binding protein 2
Tssr79696 8 119446745 to 119446766 21 + TSS region transcription start site region 79696
Tssr79697 8 119446841 to 119446852 11 + TSS region transcription start site region 79697
Tssr79698 8 119446922 to 119446947 25 + TSS region transcription start site region 79698
Tssr79699 8 119447038 to 119447135 97 + TSS region transcription start site region 79699
Tssr79700 8 119465276 to 119465305 29 + TSS region transcription start site region 79700
Tssr79701 8 119466432 to 119466450 18 + TSS region transcription start site region 79701
Slc38a8 8 119479602 to 119501698 22096 - protein coding gene solute carrier family 38, member 8
Tssr83124 8 119501698 to 119501726 28 - TSS region transcription start site region 83124
Tssr83125 8 119501761 to 119501766 5 - TSS region transcription start site region 83125
Mbtps1 8 119508156 to 119558735 50579 - protein coding gene membrane-bound transcription factor peptidase, site 1
Tssr83126 8 119545080 to 119545083 3 - TSS region transcription start site region 83126
Cpgi21115 8 119557974 to 119559328 1354 CpG island CpG island 21115
Tssr83127 8 119558412 to 119558462 50 - TSS region transcription start site region 83127
Tssr83128 8 119558468 to 119558488 20 - TSS region transcription start site region 83128
Tssr83129 8 119558681 to 119558692 11 - TSS region transcription start site region 83129
Tssr83130 8 119558699 to 119558711 12 - TSS region transcription start site region 83130
Tssr83131 8 119558718 to 119558766 48 - TSS region transcription start site region 83131
Tssr83132 8 119558794 to 119558807 13 - TSS region transcription start site region 83132
Tssr79702 8 119558973 to 119558979 6 + TSS region transcription start site region 79702
Hsdl1 8 119561989 to 119575183 13194 - protein coding gene hydroxysteroid dehydrogenase like 1
Tssr83133 8 119563723 to 119563727 4 - TSS region transcription start site region 83133
Tssr83134 8 119566517 to 119566525 8 - TSS region transcription start site region 83134
Tssr83135 8 119570024 to 119570035 11 - TSS region transcription start site region 83135
Tssr83136 8 119570079 to 119570091 12 - TSS region transcription start site region 83136
Tssr83137 8 119572080 to 119572091 11 - TSS region transcription start site region 83137
Cpgi21116 8 119574193 to 119575711 1518 CpG island CpG island 21116
Tssr83138 8 119574522 to 119574533 11 - TSS region transcription start site region 83138
Tssr83139 8 119574821 to 119574833 12 - TSS region transcription start site region 83139
Tssr83140 8 119574840 to 119574851 11 - TSS region transcription start site region 83140
Tssr83141 8 119574914 to 119574927 13 - TSS region transcription start site region 83141
Tssr83142 8 119574930 to 119574970 40 - TSS region transcription start site region 83142
Tssr83143 8 119574973 to 119574984 11 - TSS region transcription start site region 83143
Tssr83144 8 119575127 to 119575138 11 - TSS region transcription start site region 83144
Tssr83145 8 119575143 to 119575205 62 - TSS region transcription start site region 83145
Dnaaf1 8 119575235 to 119598454 23219 + protein coding gene dynein, axonemal assembly factor 1
Tssr79703 8 119575262 to 119575340 78 + TSS region transcription start site region 79703
Tssr79704 8 119575354 to 119575361 7 + TSS region transcription start site region 79704
Tssr83146 8 119585821 to 119585851 30 - TSS region transcription start site region 83146
Cpgi21117 8 119585998 to 119586293 295 CpG island CpG island 21117
Tssr83147 8 119586116 to 119586122 6 - TSS region transcription start site region 83147
Taf1c 8 119597974 to 119605240 7266 - protein coding gene TATA-box binding protein associated factor, RNA polymerase I, C
Rps13-ps4 8 119602170 to 119602625 455 - pseudogene ribosomal protein S13, pseudogene 4