Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:11728339-12220216

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi20088 8 11727226 to 11729170 1944 CpG island CpG island 20088
Arhgef7 8 11728105 to 11835219 107114 + protein coding gene Rho guanine nucleotide exchange factor (GEF7)
D8Mit256 8 11736449 to 11736555 106 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 256
Gm18991 8 11738621 to 11739363 742 + pseudogene predicted gene, 18991
Gm46031 8 11750648 to 11772803 22155 - lncRNA gene predicted gene, 46031
Tssr76241 8 11756185 to 11756189 4 + TSS region transcription start site region 76241
Cpgi20089 8 11757666 to 11759114 1448 CpG island CpG island 20089
Tssr2489 8 11758250 to 11758262 12 - TSS region transcription start site region 2489
Tssr76242 8 11758329 to 11758375 46 + TSS region transcription start site region 76242
Tssr76243 8 11758380 to 11758412 32 + TSS region transcription start site region 76243
Tssr76244 8 11779213 to 11779224 11 + TSS region transcription start site region 76244
Tssr76245 8 11779275 to 11779294 19 + TSS region transcription start site region 76245
Tssr76246 8 11782453 to 11782481 28 + TSS region transcription start site region 76246
Tssr76247 8 11797374 to 11797387 13 + TSS region transcription start site region 76247
Tssr76248 8 11797411 to 11797448 37 + TSS region transcription start site region 76248
Tssr76249 8 11798720 to 11798730 10 + TSS region transcription start site region 76249
Tssr76250 8 11810325 to 11810350 25 + TSS region transcription start site region 76250
Tssr76251 8 11812381 to 11812385 4 + TSS region transcription start site region 76251
Tssr76252 8 11822306 to 11822310 4 + TSS region transcription start site region 76252
Gm15875 8 11838978 to 11840400 1422 - bidirectional promoter lncRNA gene predicted gene 15875
Tex29 8 11840488 to 11855761 15273 + protein coding gene testis expressed 29
Tssr76253 8 11840501 to 11840508 7 + TSS region transcription start site region 76253
Tssr76254 8 11840514 to 11840530 16 + TSS region transcription start site region 76254
Tssr76255 8 11840568 to 11840579 11 + TSS region transcription start site region 76255
Tssr76256 8 11854331 to 11854335 4 + TSS region transcription start site region 76256
Gm39132 8 11874159 to 11894113 19954 + lincRNA gene predicted gene, 39132
Cpgi20090 8 11912956 to 11913159 203 CpG island CpG island 20090
Tssr76257 8 11912972 to 11913001 29 + TSS region transcription start site region 76257
Tssr76258 8 11913012 to 11913024 12 + TSS region transcription start site region 76258
Tssr76259 8 11913122 to 11913136 14 + TSS region transcription start site region 76259
Gm45680 8 11945465 to 11948297 2832 - lincRNA gene predicted gene 45680
Tssr80399 8 11948314 to 11948318 4 - TSS region transcription start site region 80399
B020031H02Rik 8 11948339 to 12000216 51877 + lincRNA gene RIKEN cDNA B020031H02 gene
Tssr76260 8 11952589 to 11952624 35 + TSS region transcription start site region 76260
Tssr76261 8 11952654 to 11952679 25 + TSS region transcription start site region 76261
Tssr76262 8 11952680 to 11952690 10 + TSS region transcription start site region 76262
Gm18318 8 11960969 to 11961515 546 - pseudogene predicted gene, 18318
D8Mit123 8 12170146 to 12170257 111 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 123
D8Mit202 8 12214666 to 12214771 105 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 202