Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:116088962-117058965

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D8Mit35 8 116101792 to 116101929 137 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 35
Sluc9 8 116101792 to 116101929 137 QTL susceptibility to lung cancer 9
Im1 8 116101792 to 116101929 137 QTL Immunoregulatory 1
Tssr79564 8 116126916 to 116126927 11 + TSS region transcription start site region 79564
4930422C21Rik 8 116181451 to 116187369 5918 - lincRNA gene RIKEN cDNA 4930422C21 gene
Gm31225 8 116190682 to 116192533 1851 + lncRNA gene predicted gene, 31225
Gm31278 8 116243515 to 116352435 108920 - lncRNA gene predicted gene, 31278
D8Mit89 8 116333216 to 116333346 130 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 89
1700018P08Rik 8 116357061 to 116359550 2489 + lincRNA gene RIKEN cDNA 1700018P08 gene
Tssr83062 8 116435720 to 116435732 12 - TSS region transcription start site region 83062
Tssr83063 8 116435763 to 116435774 11 - TSS region transcription start site region 83063
Cpgi21087 8 116480714 to 116480900 186 CpG island CpG island 21087
Gm5357 8 116489186 to 116491109 1923 + pseudogene predicted gene 5357
Gm9058 8 116501698 to 116502572 874 + pseudogene predicted gene 9058
Tssr79565 8 116501700 to 116501705 5 + TSS region transcription start site region 79565
Tssr79566 8 116504966 to 116504967 1 + TSS region transcription start site region 79566
Tssr79567 8 116504973 to 116505023 50 + TSS region transcription start site region 79567
Dynlrb2 8 116505015 to 116515915 10900 + protein coding gene dynein light chain roadblock-type 2
Gm39258 8 116527885 to 116529401 1516 - lncRNA gene predicted gene, 39258
D8Mit186 8 116528649 to 116528783 134 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 186
Tssr83064 8 116529385 to 116529392 7 - TSS region transcription start site region 83064
Tssr83065 8 116529414 to 116529422 8 - TSS region transcription start site region 83065
Tssr83066 8 116529442 to 116529449 7 - TSS region transcription start site region 83066
Tssr79568 8 116537980 to 116537983 3 + TSS region transcription start site region 79568
Tssr83067 8 116571888 to 116571892 4 - TSS region transcription start site region 83067
Tssr83068 8 116573962 to 116573965 3 - TSS region transcription start site region 83068
Cdyl2 8 116574400 to 116732991 158591 - protein coding gene chromodomain protein, Y chromosome-like 2
Gm31367 8 116605918 to 116610520 4602 + lncRNA gene predicted gene, 31367
Tssr79569 8 116605947 to 116605955 8 + TSS region transcription start site region 79569
Tssr83069 8 116616346 to 116616350 4 - TSS region transcription start site region 83069
Tssr83070 8 116673160 to 116673186 26 - TSS region transcription start site region 83070
Tssr83071 8 116677809 to 116677823 14 - TSS region transcription start site region 83071
Tssr83072 8 116677953 to 116677967 14 - TSS region transcription start site region 83072
Tssr83073 8 116708155 to 116708159 4 - TSS region transcription start site region 83073
Tssr83074 8 116711467 to 116711510 43 - TSS region transcription start site region 83074
Tssr83075 8 116713855 to 116713864 9 - TSS region transcription start site region 83075
D8Mit360 8 116721188 to 116721362 174 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 360
Cpgi21088 8 116732017 to 116733801 1784 CpG island CpG island 21088
Tssr83076 8 116732827 to 116732899 72 - TSS region transcription start site region 83076
Tssr83077 8 116733061 to 116733076 15 - TSS region transcription start site region 83077
Tssr83078 8 116733255 to 116733314 59 - TSS region transcription start site region 83078
Tssr83079 8 116733323 to 116733354 31 - TSS region transcription start site region 83079
Gm10620 8 116764144 to 116765479 1335 - pseudogene predicted gene 10620
D8Mit90 8 116778937 to 116779094 157 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 90
4930563M20Rik 8 116781712 to 116801412 19700 - lncRNA gene RIKEN cDNA 4930563M20 gene
Tssr83080 8 116799973 to 116799990 17 - TSS region transcription start site region 83080
Cpgi21089 8 116801295 to 116801770 475 CpG island CpG island 21089
D8Mit118 8 116813044 to 116813169 125 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 118
Gm42045 8 116841972 to 116853185 11213 - lncRNA gene predicted gene, 42045
Cpgi21090 8 116863347 to 116863764 417 CpG island CpG island 21090
Tssr79570 8 116873706 to 116873717 11 + TSS region transcription start site region 79570
Cmc2 8 116888685 to 116921455 32770 - protein coding gene COX assembly mitochondrial protein 2
Tssr83081 8 116894764 to 116894775 11 - TSS region transcription start site region 83081
Cpgi21091 8 116920985 to 116922162 1177 CpG island CpG island 21091
Tssr83082 8 116921378 to 116921392 14 - TSS region transcription start site region 83082
Tssr83083 8 116921408 to 116921451 43 - TSS region transcription start site region 83083
Tssr79571 8 116921715 to 116921733 18 + TSS region transcription start site region 79571
Cenpn 8 116921730 to 116941507 19777 + protein coding gene centromere protein N
Tssr79572 8 116921735 to 116921752 17 + TSS region transcription start site region 79572
Tssr79573 8 116921754 to 116921763 9 + TSS region transcription start site region 79573
Cpgi21092 8 116943147 to 116944368 1221 CpG island CpG island 21092
Tssr79574 8 116943387 to 116943424 37 + TSS region transcription start site region 79574
Atmin 8 116943393 to 116960445 17052 + protein coding gene ATM interactor
Tssr83084 8 116944100 to 116944129 29 - TSS region transcription start site region 83084
Tssr83085 8 116944182 to 116944195 13 - TSS region transcription start site region 83085
Tssr83086 8 116944324 to 116944330 6 - TSS region transcription start site region 83086
Tssr83087 8 116944373 to 116944384 11 - TSS region transcription start site region 83087
1700030J22Rik 8 116969599 to 116978954 9355 - protein coding gene RIKEN cDNA 1700030J22 gene
Cpgi21093 8 116978456 to 116979471 1015 CpG island CpG island 21093
Tssr83088 8 116978882 to 116978906 24 - TSS region transcription start site region 83088
Tssr83089 8 116978908 to 116978997 89 - TSS region transcription start site region 83089
Tssr79575 8 116979084 to 116979109 25 + TSS region transcription start site region 79575
Gcsh 8 116981828 to 116993449 11621 - protein coding gene glycine cleavage system protein H (aminomethyl carrier)
Cpgi21094 8 116992838 to 116993881 1043 CpG island CpG island 21094
Tssr83090 8 116993439 to 116993456 17 - TSS region transcription start site region 83090
Tssr83091 8 116993459 to 116993538 79 - TSS region transcription start site region 83091
Pkd1l2 8 116995679 to 117082449 86770 - protein coding gene polycystic kidney disease 1 like 2
Gm31519 8 117019043 to 117021941 2898 + lncRNA gene predicted gene, 31519
Cpgi21095 8 117028520 to 117028715 195 CpG island CpG island 21095
Gm15395 8 117036497 to 117043639 7142 + antisense lncRNA gene predicted gene 15395
Tssr79576 8 117051034 to 117051050 16 + TSS region transcription start site region 79576
Tssr79577 8 117055428 to 117055471 43 + TSS region transcription start site region 79577