Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:11563339-12385216

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ankrd10 8 11611583 to 11635757 24174 - protein coding gene ankyrin repeat domain 10
2610319H10Rik 8 11622372 to 11623240 868 unclassified gene RIKEN cDNA 2610319H10 gene
Tssr80388 8 11626803 to 11626812 9 - TSS region transcription start site region 80388
Cpgi20087 8 11634485 to 11636667 2182 CpG island CpG island 20087
Tssr80389 8 11635026 to 11635048 22 - TSS region transcription start site region 80389
Tssr80390 8 11635052 to 11635079 27 - TSS region transcription start site region 80390
Tssr80391 8 11635641 to 11635645 4 - TSS region transcription start site region 80391
Tssr80392 8 11635693 to 11635723 30 - TSS region transcription start site region 80392
Mir7238 8 11635694 to 11635736 42 - miRNA gene microRNA 7238
Tssr80393 8 11635729 to 11635743 14 - TSS region transcription start site region 80393
Tssr80394 8 11635745 to 11635765 20 - TSS region transcription start site region 80394
Gm45592 8 11637282 to 11638324 1042 + unclassified gene predicted gene 45592
Tssr76231 8 11644661 to 11644664 3 + TSS region transcription start site region 76231
1700016D06Rik 8 11654921 to 11678750 23829 - protein coding gene RIKEN cDNA 1700016D06 gene
Gm7562 8 11674574 to 11677110 2536 + unclassified gene predicted gene 7562
Tssr80395 8 11678696 to 11678706 10 - TSS region transcription start site region 80395
Tssr80396 8 11678710 to 11678726 16 - TSS region transcription start site region 80396
Tssr80397 8 11678728 to 11678754 26 - TSS region transcription start site region 80397
4930465I24Rik 8 11678808 to 11682211 3403 + antisense lncRNA gene RIKEN cDNA 4930465I24 gene
Gm7600 8 11683459 to 11684243 784 - pseudogene predicted gene 7600
Gm6524 8 11693042 to 11694484 1442 - pseudogene predicted gene 6524
Gm27854 8 11696615 to 11696858 243 - unclassified non-coding RNA gene predicted gene, 27854
D8Mit173 8 11700914 to 11701043 129 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 173
D8Mit173.1 8 11700989 to 11701185 196 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 173.1
Tssr76232 8 11713259 to 11713268 9 + TSS region transcription start site region 76232
1700128E19Rik 8 11713260 to 11720542 7282 + lincRNA gene RIKEN cDNA 1700128E19 gene
Tssr76233 8 11713274 to 11713287 13 + TSS region transcription start site region 76233
Gm45420 8 11714815 to 11715239 424 - pseudogene predicted gene 45420
Tssr80398 8 11715272 to 11715283 11 - TSS region transcription start site region 80398
4933413I22Rik 8 11726064 to 11727374 1310 unclassified gene RIKEN cDNA 4933413I22 gene
Cpgi20088 8 11727226 to 11729170 1944 CpG island CpG island 20088
Tssr76234 8 11727817 to 11727831 14 + TSS region transcription start site region 76234
Tssr76235 8 11727945 to 11727967 22 + TSS region transcription start site region 76235
Tssr76236 8 11728012 to 11728037 25 + TSS region transcription start site region 76236
Tssr76237 8 11728040 to 11728068 28 + TSS region transcription start site region 76237
Tssr76238 8 11728070 to 11728095 25 + TSS region transcription start site region 76238
Tssr76239 8 11728105 to 11728143 38 + TSS region transcription start site region 76239
Arhgef7 8 11728105 to 11835219 107114 + protein coding gene Rho guanine nucleotide exchange factor (GEF7)
Tssr76240 8 11728169 to 11728256 87 + TSS region transcription start site region 76240
D8Mit256 8 11736449 to 11736555 106 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 256
Gm18991 8 11738621 to 11739363 742 + pseudogene predicted gene, 18991
Gm46031 8 11750648 to 11772803 22155 - lncRNA gene predicted gene, 46031
Tssr76241 8 11756185 to 11756189 4 + TSS region transcription start site region 76241
Cpgi20089 8 11757666 to 11759114 1448 CpG island CpG island 20089
Tssr2489 8 11758250 to 11758262 12 - TSS region transcription start site region 2489
Tssr76242 8 11758329 to 11758375 46 + TSS region transcription start site region 76242
Tssr76243 8 11758380 to 11758412 32 + TSS region transcription start site region 76243
Tssr76244 8 11779213 to 11779224 11 + TSS region transcription start site region 76244
Tssr76245 8 11779275 to 11779294 19 + TSS region transcription start site region 76245
Tssr76246 8 11782453 to 11782481 28 + TSS region transcription start site region 76246
Tssr76247 8 11797374 to 11797387 13 + TSS region transcription start site region 76247
Tssr76248 8 11797411 to 11797448 37 + TSS region transcription start site region 76248
Tssr76249 8 11798720 to 11798730 10 + TSS region transcription start site region 76249
Tssr76250 8 11810325 to 11810350 25 + TSS region transcription start site region 76250
Tssr76251 8 11812381 to 11812385 4 + TSS region transcription start site region 76251
Tssr76252 8 11822306 to 11822310 4 + TSS region transcription start site region 76252
Gm15875 8 11838978 to 11840400 1422 - bidirectional promoter lncRNA gene predicted gene 15875
Tex29 8 11840488 to 11855761 15273 + protein coding gene testis expressed 29
Tssr76253 8 11840501 to 11840508 7 + TSS region transcription start site region 76253
Tssr76254 8 11840514 to 11840530 16 + TSS region transcription start site region 76254
Tssr76255 8 11840568 to 11840579 11 + TSS region transcription start site region 76255
Tssr76256 8 11854331 to 11854335 4 + TSS region transcription start site region 76256
Gm39132 8 11874159 to 11894113 19954 + lincRNA gene predicted gene, 39132
Cpgi20090 8 11912956 to 11913159 203 CpG island CpG island 20090
Tssr76257 8 11912972 to 11913001 29 + TSS region transcription start site region 76257
Tssr76258 8 11913012 to 11913024 12 + TSS region transcription start site region 76258
Tssr76259 8 11913122 to 11913136 14 + TSS region transcription start site region 76259
Gm45680 8 11945465 to 11948297 2832 - lincRNA gene predicted gene 45680
Tssr80399 8 11948314 to 11948318 4 - TSS region transcription start site region 80399
B020031H02Rik 8 11948339 to 12000216 51877 + lincRNA gene RIKEN cDNA B020031H02 gene
Tssr76260 8 11952589 to 11952624 35 + TSS region transcription start site region 76260
Tssr76261 8 11952654 to 11952679 25 + TSS region transcription start site region 76261
Tssr76262 8 11952680 to 11952690 10 + TSS region transcription start site region 76262
Gm18318 8 11960969 to 11961515 546 - pseudogene predicted gene, 18318
D8Mit123 8 12170146 to 12170257 111 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 123
D8Mit202 8 12214666 to 12214771 105 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 202
Gm33029 8 12234676 to 12239916 5240 - lncRNA gene predicted gene, 33029
A230072I06Rik 8 12278819 to 12280657 1838 + unclassified gene RIKEN cDNA A230072I06 gene
Gm29175 8 12282211 to 12282612 401 + lincRNA gene predicted gene 29175
Tssr2490 8 12314677 to 12314681 4 + TSS region transcription start site region 2490
Gm33175 8 12315004 to 12319480 4476 - lincRNA gene predicted gene, 33175
Tssr76263 8 12323644 to 12323659 15 + TSS region transcription start site region 76263
Tssr76264 8 12323660 to 12323675 15 + TSS region transcription start site region 76264
Tssr76265 8 12323837 to 12323844 7 + TSS region transcription start site region 76265
Gm22207 8 12356153 to 12356469 316 + unclassified non-coding RNA gene predicted gene, 22207
Cpgi20091 8 12384804 to 12387145 2341 CpG island CpG island 20091