Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:11535694-11735736

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cars2 8 11514017 to 11550778 36761 - protein coding gene cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)
Cpgi20085 8 11550279 to 11551057 778 CpG island CpG island 20085
Tssr80385 8 11550689 to 11550755 66 - TSS region transcription start site region 80385
Cpgi20086 8 11554861 to 11558727 3866 CpG island CpG island 20086
Tssr80386 8 11555258 to 11555267 9 - TSS region transcription start site region 80386
Ing1 8 11555762 to 11563251 7489 + protein coding gene inhibitor of growth family, member 1
Tssr76223 8 11555784 to 11555794 10 + TSS region transcription start site region 76223
Tssr76224 8 11555845 to 11555879 34 + TSS region transcription start site region 76224
Tssr76225 8 11556061 to 11556099 38 + TSS region transcription start site region 76225
Tssr76226 8 11556436 to 11556466 30 + TSS region transcription start site region 76226
Tssr76227 8 11556469 to 11556491 22 + TSS region transcription start site region 76227
Tssr76228 8 11556867 to 11556918 51 + TSS region transcription start site region 76228
Tssr80387 8 11557991 to 11557997 6 - TSS region transcription start site region 80387
Tssr76229 8 11558412 to 11558433 21 + TSS region transcription start site region 76229
Tssr76230 8 11558450 to 11558468 18 + TSS region transcription start site region 76230
Ankrd10 8 11611583 to 11635757 24174 - protein coding gene ankyrin repeat domain 10
2610319H10Rik 8 11622372 to 11623240 868 unclassified gene RIKEN cDNA 2610319H10 gene
Tssr80388 8 11626803 to 11626812 9 - TSS region transcription start site region 80388
Cpgi20087 8 11634485 to 11636667 2182 CpG island CpG island 20087
Tssr80389 8 11635026 to 11635048 22 - TSS region transcription start site region 80389
Tssr80390 8 11635052 to 11635079 27 - TSS region transcription start site region 80390
Tssr80391 8 11635641 to 11635645 4 - TSS region transcription start site region 80391
Tssr80392 8 11635693 to 11635723 30 - TSS region transcription start site region 80392
Mir7238 8 11635694 to 11635736 42 - miRNA gene microRNA 7238
Tssr80393 8 11635729 to 11635743 14 - TSS region transcription start site region 80393
Tssr80394 8 11635745 to 11635765 20 - TSS region transcription start site region 80394
Gm45592 8 11637282 to 11638324 1042 + unclassified gene predicted gene 45592
Tssr76231 8 11644661 to 11644664 3 + TSS region transcription start site region 76231
1700016D06Rik 8 11654921 to 11678750 23829 - protein coding gene RIKEN cDNA 1700016D06 gene
Gm7562 8 11674574 to 11677110 2536 + unclassified gene predicted gene 7562
Tssr80395 8 11678696 to 11678706 10 - TSS region transcription start site region 80395
Tssr80396 8 11678710 to 11678726 16 - TSS region transcription start site region 80396
Tssr80397 8 11678728 to 11678754 26 - TSS region transcription start site region 80397
4930465I24Rik 8 11678808 to 11682211 3403 + antisense lncRNA gene RIKEN cDNA 4930465I24 gene
Gm7600 8 11683459 to 11684243 784 - pseudogene predicted gene 7600
Gm6524 8 11693042 to 11694484 1442 - pseudogene predicted gene 6524
Gm27854 8 11696615 to 11696858 243 - unclassified non-coding RNA gene predicted gene, 27854
D8Mit173 8 11700914 to 11701043 129 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 173
D8Mit173.1 8 11700989 to 11701185 196 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 173.1
Tssr76232 8 11713259 to 11713268 9 + TSS region transcription start site region 76232
1700128E19Rik 8 11713260 to 11720542 7282 + lincRNA gene RIKEN cDNA 1700128E19 gene
Tssr76233 8 11713274 to 11713287 13 + TSS region transcription start site region 76233
Gm45420 8 11714815 to 11715239 424 - pseudogene predicted gene 45420
Tssr80398 8 11715272 to 11715283 11 - TSS region transcription start site region 80398
4933413I22Rik 8 11726064 to 11727374 1310 unclassified gene RIKEN cDNA 4933413I22 gene
Cpgi20088 8 11727226 to 11729170 1944 CpG island CpG island 20088
Tssr76234 8 11727817 to 11727831 14 + TSS region transcription start site region 76234
Tssr76235 8 11727945 to 11727967 22 + TSS region transcription start site region 76235
Tssr76236 8 11728012 to 11728037 25 + TSS region transcription start site region 76236
Tssr76237 8 11728040 to 11728068 28 + TSS region transcription start site region 76237
Tssr76238 8 11728070 to 11728095 25 + TSS region transcription start site region 76238
Tssr76239 8 11728105 to 11728143 38 + TSS region transcription start site region 76239
Arhgef7 8 11728105 to 11835219 107114 + protein coding gene Rho guanine nucleotide exchange factor (GEF7)
Tssr76240 8 11728169 to 11728256 87 + TSS region transcription start site region 76240