Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:11435969-12486515

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171 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col4a2 8 11312805 to 11449287 136482 + protein coding gene collagen, type IV, alpha 2
Tssr76206 8 11448154 to 11448168 14 + TSS region transcription start site region 76206
Tssr76207 8 11448495 to 11448557 62 + TSS region transcription start site region 76207
Tssr76208 8 11448969 to 11449001 32 + TSS region transcription start site region 76208
Tssr76209 8 11449034 to 11449045 11 + TSS region transcription start site region 76209
Rab20 8 11453513 to 11478499 24986 - protein coding gene RAB20, member RAS oncogene family
Tssr80381 8 11454924 to 11454934 10 - TSS region transcription start site region 80381
D8Mit217 8 11455083 to 11455257 174 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 217
Gm20100 8 11457471 to 11459742 2271 - unclassified gene predicted gene, 20100
Tssr76210 8 11458498 to 11458521 23 + TSS region transcription start site region 76210
Tssr76211 8 11458522 to 11458544 22 + TSS region transcription start site region 76211
Tssr76212 8 11461212 to 11461223 11 + TSS region transcription start site region 76212
Tssr76213 8 11461228 to 11461244 16 + TSS region transcription start site region 76213
Tssr76214 8 11463969 to 11463982 13 + TSS region transcription start site region 76214
Tssr76215 8 11464602 to 11464631 29 + TSS region transcription start site region 76215
Tssr80382 8 11470351 to 11470354 3 - TSS region transcription start site region 80382
Tssr80383 8 11476817 to 11476824 7 - TSS region transcription start site region 80383
Tssr76216 8 11476989 to 11477002 13 + TSS region transcription start site region 76216
Tssr76217 8 11477004 to 11477016 12 + TSS region transcription start site region 76217
Tssr76218 8 11477018 to 11477030 12 + TSS region transcription start site region 76218
Cpgi20083 8 11477855 to 11478727 872 CpG island CpG island 20083
Tssr76219 8 11477921 to 11477953 32 + TSS region transcription start site region 76219
E230013L22Rik 8 11477929 to 11480241 2312 + bidirectional promoter lncRNA gene RIKEN cDNA E230013L22 gene
Tssr80384 8 11478618 to 11478668 50 - TSS region transcription start site region 80384
Cpgi20084 8 11497158 to 11498077 919 CpG island CpG island 20084
Naxd 8 11497506 to 11513287 15781 + protein coding gene NAD(P)HX dehydratase
Tssr76220 8 11497547 to 11497616 69 + TSS region transcription start site region 76220
Tssr76221 8 11497619 to 11497648 29 + TSS region transcription start site region 76221
Cars2 8 11514017 to 11550778 36761 - protein coding gene cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)
Tssr76222 8 11519235 to 11519238 3 + TSS region transcription start site region 76222
Cpgi20085 8 11550279 to 11551057 778 CpG island CpG island 20085
Tssr80385 8 11550689 to 11550755 66 - TSS region transcription start site region 80385
Cpgi20086 8 11554861 to 11558727 3866 CpG island CpG island 20086
Tssr80386 8 11555258 to 11555267 9 - TSS region transcription start site region 80386
Ing1 8 11555762 to 11563251 7489 + protein coding gene inhibitor of growth family, member 1
Tssr76223 8 11555784 to 11555794 10 + TSS region transcription start site region 76223
Tssr76224 8 11555845 to 11555879 34 + TSS region transcription start site region 76224
Tssr76225 8 11556061 to 11556099 38 + TSS region transcription start site region 76225
Tssr76226 8 11556436 to 11556466 30 + TSS region transcription start site region 76226
Tssr76227 8 11556469 to 11556491 22 + TSS region transcription start site region 76227
Tssr76228 8 11556867 to 11556918 51 + TSS region transcription start site region 76228
Tssr80387 8 11557991 to 11557997 6 - TSS region transcription start site region 80387
Tssr76229 8 11558412 to 11558433 21 + TSS region transcription start site region 76229
Tssr76230 8 11558450 to 11558468 18 + TSS region transcription start site region 76230
Ankrd10 8 11611583 to 11635757 24174 - protein coding gene ankyrin repeat domain 10
2610319H10Rik 8 11622372 to 11623240 868 unclassified gene RIKEN cDNA 2610319H10 gene
Tssr80388 8 11626803 to 11626812 9 - TSS region transcription start site region 80388
Cpgi20087 8 11634485 to 11636667 2182 CpG island CpG island 20087
Tssr80389 8 11635026 to 11635048 22 - TSS region transcription start site region 80389
Tssr80390 8 11635052 to 11635079 27 - TSS region transcription start site region 80390
Tssr80391 8 11635641 to 11635645 4 - TSS region transcription start site region 80391
Tssr80392 8 11635693 to 11635723 30 - TSS region transcription start site region 80392
Mir7238 8 11635694 to 11635736 42 - miRNA gene microRNA 7238
Tssr80393 8 11635729 to 11635743 14 - TSS region transcription start site region 80393
Tssr80394 8 11635745 to 11635765 20 - TSS region transcription start site region 80394
Gm45592 8 11637282 to 11638324 1042 + unclassified gene predicted gene 45592
Tssr76231 8 11644661 to 11644664 3 + TSS region transcription start site region 76231
1700016D06Rik 8 11654921 to 11678750 23829 - protein coding gene RIKEN cDNA 1700016D06 gene
Gm7562 8 11674574 to 11677110 2536 + unclassified gene predicted gene 7562
Tssr80395 8 11678696 to 11678706 10 - TSS region transcription start site region 80395
Tssr80396 8 11678710 to 11678726 16 - TSS region transcription start site region 80396
Tssr80397 8 11678728 to 11678754 26 - TSS region transcription start site region 80397
4930465I24Rik 8 11678808 to 11682211 3403 + antisense lncRNA gene RIKEN cDNA 4930465I24 gene
Gm7600 8 11683459 to 11684243 784 - pseudogene predicted gene 7600
Gm6524 8 11693042 to 11694484 1442 - pseudogene predicted gene 6524
Gm27854 8 11696615 to 11696858 243 - unclassified non-coding RNA gene predicted gene, 27854
D8Mit173 8 11700914 to 11701043 129 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 173
D8Mit173.1 8 11700989 to 11701185 196 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 173.1
Tssr76232 8 11713259 to 11713268 9 + TSS region transcription start site region 76232
1700128E19Rik 8 11713260 to 11720542 7282 + lincRNA gene RIKEN cDNA 1700128E19 gene
Tssr76233 8 11713274 to 11713287 13 + TSS region transcription start site region 76233
Gm45420 8 11714815 to 11715239 424 - pseudogene predicted gene 45420
Tssr80398 8 11715272 to 11715283 11 - TSS region transcription start site region 80398
4933413I22Rik 8 11726064 to 11727374 1310 unclassified gene RIKEN cDNA 4933413I22 gene
Cpgi20088 8 11727226 to 11729170 1944 CpG island CpG island 20088
Tssr76234 8 11727817 to 11727831 14 + TSS region transcription start site region 76234
Tssr76235 8 11727945 to 11727967 22 + TSS region transcription start site region 76235
Tssr76236 8 11728012 to 11728037 25 + TSS region transcription start site region 76236
Tssr76237 8 11728040 to 11728068 28 + TSS region transcription start site region 76237
Tssr76238 8 11728070 to 11728095 25 + TSS region transcription start site region 76238
Tssr76239 8 11728105 to 11728143 38 + TSS region transcription start site region 76239
Arhgef7 8 11728105 to 11835219 107114 + protein coding gene Rho guanine nucleotide exchange factor (GEF7)
Tssr76240 8 11728169 to 11728256 87 + TSS region transcription start site region 76240
D8Mit256 8 11736449 to 11736555 106 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 256
Gm18991 8 11738621 to 11739363 742 + pseudogene predicted gene, 18991
Gm46031 8 11750648 to 11772803 22155 - lncRNA gene predicted gene, 46031
Tssr76241 8 11756185 to 11756189 4 + TSS region transcription start site region 76241
Cpgi20089 8 11757666 to 11759114 1448 CpG island CpG island 20089
Tssr2489 8 11758250 to 11758262 12 - TSS region transcription start site region 2489
Tssr76242 8 11758329 to 11758375 46 + TSS region transcription start site region 76242
Tssr76243 8 11758380 to 11758412 32 + TSS region transcription start site region 76243
Tssr76244 8 11779213 to 11779224 11 + TSS region transcription start site region 76244
Tssr76245 8 11779275 to 11779294 19 + TSS region transcription start site region 76245
Tssr76246 8 11782453 to 11782481 28 + TSS region transcription start site region 76246
Tssr76247 8 11797374 to 11797387 13 + TSS region transcription start site region 76247
Tssr76248 8 11797411 to 11797448 37 + TSS region transcription start site region 76248
Tssr76249 8 11798720 to 11798730 10 + TSS region transcription start site region 76249
Tssr76250 8 11810325 to 11810350 25 + TSS region transcription start site region 76250
Tssr76251 8 11812381 to 11812385 4 + TSS region transcription start site region 76251
Tssr76252 8 11822306 to 11822310 4 + TSS region transcription start site region 76252
Gm15875 8 11838978 to 11840400 1422 - bidirectional promoter lncRNA gene predicted gene 15875
Tex29 8 11840488 to 11855761 15273 + protein coding gene testis expressed 29
Tssr76253 8 11840501 to 11840508 7 + TSS region transcription start site region 76253
Tssr76254 8 11840514 to 11840530 16 + TSS region transcription start site region 76254
Tssr76255 8 11840568 to 11840579 11 + TSS region transcription start site region 76255
Tssr76256 8 11854331 to 11854335 4 + TSS region transcription start site region 76256
Gm39132 8 11874159 to 11894113 19954 + lincRNA gene predicted gene, 39132
Cpgi20090 8 11912956 to 11913159 203 CpG island CpG island 20090
Tssr76257 8 11912972 to 11913001 29 + TSS region transcription start site region 76257
Tssr76258 8 11913012 to 11913024 12 + TSS region transcription start site region 76258
Tssr76259 8 11913122 to 11913136 14 + TSS region transcription start site region 76259
Gm45680 8 11945465 to 11948297 2832 - lincRNA gene predicted gene 45680
Tssr80399 8 11948314 to 11948318 4 - TSS region transcription start site region 80399
B020031H02Rik 8 11948339 to 12000216 51877 + lincRNA gene RIKEN cDNA B020031H02 gene
Tssr76260 8 11952589 to 11952624 35 + TSS region transcription start site region 76260
Tssr76261 8 11952654 to 11952679 25 + TSS region transcription start site region 76261
Tssr76262 8 11952680 to 11952690 10 + TSS region transcription start site region 76262
Gm18318 8 11960969 to 11961515 546 - pseudogene predicted gene, 18318
D8Mit123 8 12170146 to 12170257 111 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 123
D8Mit202 8 12214666 to 12214771 105 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 202
Gm33029 8 12234676 to 12239916 5240 - lncRNA gene predicted gene, 33029
A230072I06Rik 8 12278819 to 12280657 1838 + unclassified gene RIKEN cDNA A230072I06 gene
Gm29175 8 12282211 to 12282612 401 + lincRNA gene predicted gene 29175
Tssr2490 8 12314677 to 12314681 4 + TSS region transcription start site region 2490
Gm33175 8 12315004 to 12319480 4476 - lincRNA gene predicted gene, 33175
Tssr76263 8 12323644 to 12323659 15 + TSS region transcription start site region 76263
Tssr76264 8 12323660 to 12323675 15 + TSS region transcription start site region 76264
Tssr76265 8 12323837 to 12323844 7 + TSS region transcription start site region 76265
Gm22207 8 12356153 to 12356469 316 + unclassified non-coding RNA gene predicted gene, 22207
Cpgi20091 8 12384804 to 12387145 2341 CpG island CpG island 20091
Tssr76266 8 12385739 to 12385750 11 + TSS region transcription start site region 76266
Tssr76267 8 12385751 to 12385766 15 + TSS region transcription start site region 76267
Tssr76268 8 12385769 to 12385780 11 + TSS region transcription start site region 76268
Sox1ot 8 12385771 to 12436732 50961 + sense overlapping lncRNA gene Sox1 overlapping transcript
Tssr2491 8 12385806 to 12385809 3 + TSS region transcription start site region 2491
Gm45560 8 12390168 to 12391639 1471 + unclassified gene predicted gene 45560
Cpgi20092 8 12390254 to 12390841 587 CpG island CpG island 20092
Cpgi20093 8 12391481 to 12391954 473 CpG island CpG island 20093
Cpgi20094 8 12394834 to 12397978 3144 CpG island CpG island 20094
Tssr76269 8 12395287 to 12395295 8 + TSS region transcription start site region 76269
Tssr76270 8 12395500 to 12395511 11 + TSS region transcription start site region 76270
Sox1 8 12395519 to 12399555 4036 + protein coding gene SRY (sex determining region Y)-box 1
Tssr76271 8 12395526 to 12395531 5 + TSS region transcription start site region 76271
Tssr76272 8 12395603 to 12395621 18 + TSS region transcription start site region 76272
Tssr76273 8 12395629 to 12395644 15 + TSS region transcription start site region 76273
Tssr76274 8 12395670 to 12395682 12 + TSS region transcription start site region 76274
Tssr76275 8 12395843 to 12395852 9 + TSS region transcription start site region 76275
Tssr76276 8 12395874 to 12395885 11 + TSS region transcription start site region 76276
Tssr76277 8 12395892 to 12395919 27 + TSS region transcription start site region 76277
Tssr76278 8 12396116 to 12396127 11 + TSS region transcription start site region 76278
Tssr76279 8 12396205 to 12396222 17 + TSS region transcription start site region 76279
Tssr76280 8 12396267 to 12396279 12 + TSS region transcription start site region 76280
Tssr76281 8 12396320 to 12396363 43 + TSS region transcription start site region 76281
Gm25239 8 12396403 to 12396488 85 + miRNA gene predicted gene, 25239
Cpgi20095 8 12400882 to 12401963 1081 CpG island CpG island 20095
Cpgi20096 8 12428394 to 12428556 162 CpG island CpG island 20096
Cpgi20097 8 12430168 to 12431540 1372 CpG island CpG island 20097
Tssr80400 8 12439171 to 12439213 42 - TSS region transcription start site region 80400
Tssr76282 8 12439344 to 12439357 13 + TSS region transcription start site region 76282
Tssr76283 8 12439360 to 12439379 19 + TSS region transcription start site region 76283
Cpgi20098 8 12446321 to 12446611 290 CpG island CpG island 20098
D8Mit142 8 12449265 to 12449413 148 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 142
Tssr76284 8 12457240 to 12457265 25 + TSS region transcription start site region 76284
Tssr80401 8 12458016 to 12458024 8 - TSS region transcription start site region 80401
Gm33326 8 12461419 to 12466964 5545 - lincRNA gene predicted gene, 33326
Tssr80402 8 12466875 to 12466923 48 - TSS region transcription start site region 80402
Tssr80403 8 12466958 to 12466966 8 - TSS region transcription start site region 80403
Cpgi20099 8 12467811 to 12468035 224 CpG island CpG island 20099
Gm33532 8 12472134 to 12474458 2324 - lncRNA gene predicted gene, 33532
Cpgi20100 8 12477905 to 12478345 440 CpG island CpG island 20100
Tssr80404 8 12478131 to 12478150 19 - TSS region transcription start site region 80404