Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 8:11414017-11650778

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62 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col4a2 8 11312805 to 11449287 136482 + protein coding gene collagen, type IV, alpha 2
Gm15419 8 11399186 to 11417892 18706 - lncRNA gene predicted gene 15419
Tssr2488 8 11423562 to 11423564 2 + TSS region transcription start site region 2488
D8Mit218.2 8 11428855 to 11429006 151 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 218.2
D8Mit218 8 11428984 to 11429076 92 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 218
Tssr76205 8 11431090 to 11431101 11 + TSS region transcription start site region 76205
Tssr76206 8 11448154 to 11448168 14 + TSS region transcription start site region 76206
Tssr76207 8 11448495 to 11448557 62 + TSS region transcription start site region 76207
Tssr76208 8 11448969 to 11449001 32 + TSS region transcription start site region 76208
Tssr76209 8 11449034 to 11449045 11 + TSS region transcription start site region 76209
Rab20 8 11453518 to 11478710 25192 - protein coding gene RAB20, member RAS oncogene family
Tssr80381 8 11454924 to 11454934 10 - TSS region transcription start site region 80381
D8Mit217 8 11455083 to 11455257 174 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 217
Gm20100 8 11457471 to 11459742 2271 - unclassified gene predicted gene, 20100
Tssr76210 8 11458498 to 11458521 23 + TSS region transcription start site region 76210
Tssr76211 8 11458522 to 11458544 22 + TSS region transcription start site region 76211
Tssr76212 8 11461212 to 11461223 11 + TSS region transcription start site region 76212
Tssr76213 8 11461228 to 11461244 16 + TSS region transcription start site region 76213
Tssr76214 8 11463969 to 11463982 13 + TSS region transcription start site region 76214
Tssr76215 8 11464602 to 11464631 29 + TSS region transcription start site region 76215
Tssr80382 8 11470351 to 11470354 3 - TSS region transcription start site region 80382
Tssr80383 8 11476817 to 11476824 7 - TSS region transcription start site region 80383
Tssr76216 8 11476989 to 11477002 13 + TSS region transcription start site region 76216
Tssr76217 8 11477004 to 11477016 12 + TSS region transcription start site region 76217
Tssr76218 8 11477018 to 11477030 12 + TSS region transcription start site region 76218
Cpgi20083 8 11477855 to 11478727 872 CpG island CpG island 20083
Tssr76219 8 11477921 to 11477953 32 + TSS region transcription start site region 76219
E230013L22Rik 8 11477929 to 11480241 2312 + lncRNA gene RIKEN cDNA E230013L22 gene
Tssr80384 8 11478618 to 11478668 50 - TSS region transcription start site region 80384
Cpgi20084 8 11497158 to 11498077 919 CpG island CpG island 20084
Naxd 8 11497506 to 11513287 15781 + protein coding gene NAD(P)HX dehydratase
Tssr76220 8 11497547 to 11497616 69 + TSS region transcription start site region 76220
Tssr76221 8 11497619 to 11497648 29 + TSS region transcription start site region 76221
Cars2 8 11514017 to 11550781 36764 - protein coding gene cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)
Tssr76222 8 11519235 to 11519238 3 + TSS region transcription start site region 76222
Cpgi20085 8 11550279 to 11551057 778 CpG island CpG island 20085
Tssr80385 8 11550689 to 11550755 66 - TSS region transcription start site region 80385
Cpgi20086 8 11554861 to 11558727 3866 CpG island CpG island 20086
Tssr80386 8 11555258 to 11555267 9 - TSS region transcription start site region 80386
Ing1 8 11555762 to 11563251 7489 + protein coding gene inhibitor of growth family, member 1
Tssr76223 8 11555784 to 11555794 10 + TSS region transcription start site region 76223
Tssr76224 8 11555845 to 11555879 34 + TSS region transcription start site region 76224
Tssr76225 8 11556061 to 11556099 38 + TSS region transcription start site region 76225
Tssr76226 8 11556436 to 11556466 30 + TSS region transcription start site region 76226
Tssr76227 8 11556469 to 11556491 22 + TSS region transcription start site region 76227
Tssr76228 8 11556867 to 11556918 51 + TSS region transcription start site region 76228
Tssr80387 8 11557991 to 11557997 6 - TSS region transcription start site region 80387
Tssr76229 8 11558412 to 11558433 21 + TSS region transcription start site region 76229
Tssr76230 8 11558450 to 11558468 18 + TSS region transcription start site region 76230
Ankrd10 8 11611583 to 11635757 24174 - protein coding gene ankyrin repeat domain 10
2610319H10Rik 8 11622372 to 11623240 868 lncRNA gene RIKEN cDNA 2610319H10 gene
Tssr80388 8 11626803 to 11626812 9 - TSS region transcription start site region 80388
Cpgi20087 8 11634485 to 11636667 2182 CpG island CpG island 20087
Tssr80389 8 11635026 to 11635048 22 - TSS region transcription start site region 80389
Tssr80390 8 11635052 to 11635079 27 - TSS region transcription start site region 80390
Tssr80391 8 11635641 to 11635645 4 - TSS region transcription start site region 80391
Tssr80392 8 11635693 to 11635723 30 - TSS region transcription start site region 80392
Mir7238 8 11635694 to 11635736 42 - miRNA gene microRNA 7238
Tssr80393 8 11635729 to 11635743 14 - TSS region transcription start site region 80393
Tssr80394 8 11635745 to 11635765 20 - TSS region transcription start site region 80394
Gm45592 8 11637282 to 11638324 1042 + unclassified gene predicted gene 45592
Tssr76231 8 11644661 to 11644664 3 + TSS region transcription start site region 76231