Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:11212805-11549287

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col4a1 8 11198423 to 11312826 114403 - protein coding gene collagen, type IV, alpha 1
Tssr76192 8 11217945 to 11217970 25 + TSS region transcription start site region 76192
Tssr80370 8 11218764 to 11218769 5 - TSS region transcription start site region 80370
Tssr80371 8 11219189 to 11219201 12 - TSS region transcription start site region 80371
Tssr80372 8 11221377 to 11221392 15 - TSS region transcription start site region 80372
Tssr80373 8 11231427 to 11231472 45 - TSS region transcription start site region 80373
Tssr80374 8 11239175 to 11239178 3 - TSS region transcription start site region 80374
Gm32709 8 11258088 to 11285958 27870 + lncRNA gene predicted gene, 32709
Tssr80375 8 11267617 to 11267659 42 - TSS region transcription start site region 80375
Tssr80376 8 11279657 to 11279692 35 - TSS region transcription start site region 80376
Tssr80377 8 11282081 to 11282090 9 - TSS region transcription start site region 80377
Gm44716 8 11290558 to 11291267 709 - unclassified gene predicted gene 44716
Cpgi20082 8 11311904 to 11313977 2073 CpG island CpG island 20082
Tssr76193 8 11312508 to 11312531 23 + TSS region transcription start site region 76193
Tssr76194 8 11312532 to 11312557 25 + TSS region transcription start site region 76194
Tssr80378 8 11312731 to 11312758 27 - TSS region transcription start site region 80378
Col4a2 8 11312805 to 11449287 136482 + protein coding gene collagen, type IV, alpha 2
Tssr76195 8 11312860 to 11312867 7 + TSS region transcription start site region 76195
Tssr76196 8 11312869 to 11312887 18 + TSS region transcription start site region 76196
Tssr80379 8 11314023 to 11314027 4 - TSS region transcription start site region 80379
Gm46030 8 11321303 to 11351695 30392 - lncRNA gene predicted gene, 46030
Tssr76197 8 11325485 to 11325492 7 + TSS region transcription start site region 76197
Tssr76198 8 11325581 to 11325600 19 + TSS region transcription start site region 76198
Tssr76199 8 11336213 to 11336224 11 + TSS region transcription start site region 76199
Tssr76200 8 11352046 to 11352061 15 + TSS region transcription start site region 76200
Tssr80380 8 11354301 to 11354323 22 - TSS region transcription start site region 80380
Tssr76201 8 11354318 to 11354330 12 + TSS region transcription start site region 76201
Tssr76202 8 11398668 to 11398681 13 + TSS region transcription start site region 76202
Tssr76203 8 11398757 to 11398768 11 + TSS region transcription start site region 76203
Gm15419 8 11399186 to 11417892 18706 - antisense lncRNA gene predicted gene 15419
Tssr76204 8 11406821 to 11406825 4 + TSS region transcription start site region 76204
Tssr2487 8 11408104 to 11408115 11 + TSS region transcription start site region 2487
Tssr2488 8 11423562 to 11423564 2 + TSS region transcription start site region 2488
D8Mit218.2 8 11428855 to 11429006 151 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 218.2
D8Mit218 8 11428984 to 11429076 92 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 218
Tssr76205 8 11431090 to 11431101 11 + TSS region transcription start site region 76205
Tssr76206 8 11448154 to 11448168 14 + TSS region transcription start site region 76206
Tssr76207 8 11448495 to 11448557 62 + TSS region transcription start site region 76207
Tssr76208 8 11448969 to 11449001 32 + TSS region transcription start site region 76208
Tssr76209 8 11449034 to 11449045 11 + TSS region transcription start site region 76209
Rab20 8 11453513 to 11478499 24986 - protein coding gene RAB20, member RAS oncogene family
Tssr80381 8 11454924 to 11454934 10 - TSS region transcription start site region 80381
D8Mit217 8 11455083 to 11455257 174 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 217
Gm20100 8 11457471 to 11459742 2271 - unclassified gene predicted gene, 20100
Tssr76210 8 11458498 to 11458521 23 + TSS region transcription start site region 76210
Tssr76211 8 11458522 to 11458544 22 + TSS region transcription start site region 76211
Tssr76212 8 11461212 to 11461223 11 + TSS region transcription start site region 76212
Tssr76213 8 11461228 to 11461244 16 + TSS region transcription start site region 76213
Tssr76214 8 11463969 to 11463982 13 + TSS region transcription start site region 76214
Tssr76215 8 11464602 to 11464631 29 + TSS region transcription start site region 76215
Tssr80382 8 11470351 to 11470354 3 - TSS region transcription start site region 80382
Tssr80383 8 11476817 to 11476824 7 - TSS region transcription start site region 80383
Tssr76216 8 11476989 to 11477002 13 + TSS region transcription start site region 76216
Tssr76217 8 11477004 to 11477016 12 + TSS region transcription start site region 76217
Tssr76218 8 11477018 to 11477030 12 + TSS region transcription start site region 76218
Cpgi20083 8 11477855 to 11478727 872 CpG island CpG island 20083
Tssr76219 8 11477921 to 11477953 32 + TSS region transcription start site region 76219
E230013L22Rik 8 11477929 to 11480241 2312 + bidirectional promoter lncRNA gene RIKEN cDNA E230013L22 gene
Tssr80384 8 11478618 to 11478668 50 - TSS region transcription start site region 80384
Cpgi20084 8 11497158 to 11498077 919 CpG island CpG island 20084
Naxd 8 11497506 to 11513287 15781 + protein coding gene NAD(P)HX dehydratase
Tssr76220 8 11497547 to 11497616 69 + TSS region transcription start site region 76220
Tssr76221 8 11497619 to 11497648 29 + TSS region transcription start site region 76221
Cars2 8 11514017 to 11550778 36761 - protein coding gene cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)
Tssr76222 8 11519235 to 11519238 3 + TSS region transcription start site region 76222