Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:112000021-113140039

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kars 8 111993443 to 112011323 17880 - protein coding gene lysyl-tRNA synthetase
Cpgi21076 8 112011096 to 112012416 1320 CpG island CpG island 21076
Tssr82987 8 112011271 to 112011296 25 - TSS region transcription start site region 82987
Tssr82988 8 112011299 to 112011310 11 - TSS region transcription start site region 82988
Tssr82989 8 112011320 to 112011372 52 - TSS region transcription start site region 82989
Tssr79512 8 112011365 to 112011388 23 + TSS region transcription start site region 79512
Tssr79513 8 112011392 to 112011447 55 + TSS region transcription start site region 79513
Terf2ip 8 112011398 to 112020528 9130 + protein coding gene telomeric repeat binding factor 2, interacting protein
Tssr79514 8 112011453 to 112011467 14 + TSS region transcription start site region 79514
Gm6793 8 112013433 to 112015036 1603 - pseudogene predicted gene 6793
Tssr79515 8 112018703 to 112018722 19 + TSS region transcription start site region 79515
Tssr79516 8 112018842 to 112018868 26 + TSS region transcription start site region 79516
Gm9564 8 112024933 to 112027351 2418 - protein coding gene predicted gene 9564
Tssr82990 8 112030814 to 112030845 31 - TSS region transcription start site region 82990
Tssr82991 8 112030875 to 112030914 39 - TSS region transcription start site region 82991
Tssr82992 8 112032341 to 112032359 18 - TSS region transcription start site region 82992
Gm36671 8 112061572 to 112063676 2104 + lncRNA gene predicted gene, 36671
Gm22827 8 112062505 to 112062611 106 + snRNA gene predicted gene, 22827
D8Mit165 8 112148433 to 112148534 101 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 165
Gm3635 8 112236613 to 112236966 353 - pseudogene predicted gene 3635
Gm39253 8 112293848 to 112297155 3307 - lncRNA gene predicted gene, 39253
Gm39254 8 112472122 to 112475506 3384 - lncRNA gene predicted gene, 39254
Gm26994 8 112554617 to 112569575 14958 - antisense lncRNA gene predicted gene, 26994
Cpgi21077 8 112569654 to 112569812 158 CpG island CpG island 21077
Tssr79517 8 112569827 to 112569856 29 + TSS region transcription start site region 79517
Tssr79518 8 112570021 to 112570039 18 + TSS region transcription start site region 79518
Tssr79519 8 112570043 to 112570060 17 + TSS region transcription start site region 79519
Cntnap4 8 112570043 to 112882717 312674 + protein coding gene contactin associated protein-like 4
Gm22664 8 112581636 to 112581740 104 + unclassified non-coding RNA gene predicted gene, 22664
D8Mit199 8 112595466 to 112595612 146 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 199
Tssr79520 8 112698444 to 112698459 15 + TSS region transcription start site region 79520
D8Mit152 8 112717319 to 112717565 246 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 152
D8Mit353 8 112784365 to 112784479 114 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 353
D8Mit270 8 112850476 to 112850598 122 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 270
Cpgi21078 8 112854023 to 112854548 525 CpG island CpG island 21078
Gm45904 8 112880460 to 113004997 124537 - antisense lncRNA gene predicted gene 45904
1110013I04Rik 8 112961447 to 112962559 1112 unclassified gene RIKEN cDNA 1110013I04 gene
Gm10280 8 113067262 to 113093334 26072 + lincRNA gene predicted gene 10280
Gm29896 8 113134783 to 113140159 5376 - lncRNA gene predicted gene, 29896