Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:111880476-113820598

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Chst5 8 111889135 to 111910199 21064 - protein coding gene carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5
Cpgi21071 8 111889813 to 111891003 1190 CpG island CpG island 21071
Cpgi21072 8 111909748 to 111910441 693 CpG island CpG island 21072
Tssr82984 8 111910171 to 111910190 19 - TSS region transcription start site region 82984
Tmem231 8 111912011 to 111933818 21807 - protein coding gene transmembrane protein 231
Gm36531 8 111914116 to 111929092 14976 + lncRNA gene predicted gene, 36531
Tssr79508 8 111914144 to 111914154 10 + TSS region transcription start site region 79508
Cpgi21073 8 111933171 to 111933927 756 CpG island CpG island 21073
Tssr82985 8 111933761 to 111933816 55 - TSS region transcription start site region 82985
Cpgi21074 8 111940451 to 111941560 1109 CpG island CpG island 21074
Tssr79509 8 111940697 to 111940708 11 + TSS region transcription start site region 79509
Gabarapl2 8 111940703 to 111952915 12212 + protein coding gene gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2
Tssr79510 8 111940710 to 111940739 29 + TSS region transcription start site region 79510
Tssr79511 8 111940746 to 111940756 10 + TSS region transcription start site region 79511
D8Ertd54e 8 111945832 to 111946053 221 DNA segment DNA segment, Chr 8, ERATO Doi 54, expressed
Adat1 8 111966908 to 111992302 25394 - protein coding gene adenosine deaminase, tRNA-specific 1
C88045 8 111977510 to 111981932 4422 unclassified gene expressed sequence C88045
Cpgi21075 8 111991861 to 111992444 583 CpG island CpG island 21075
Tssr82986 8 111992258 to 111992295 37 - TSS region transcription start site region 82986
Kars 8 111993443 to 112011323 17880 - protein coding gene lysyl-tRNA synthetase
Cpgi21076 8 112011096 to 112012416 1320 CpG island CpG island 21076
Tssr82987 8 112011271 to 112011296 25 - TSS region transcription start site region 82987
Tssr82988 8 112011299 to 112011310 11 - TSS region transcription start site region 82988
Tssr82989 8 112011320 to 112011372 52 - TSS region transcription start site region 82989
Tssr79512 8 112011365 to 112011388 23 + TSS region transcription start site region 79512
Tssr79513 8 112011392 to 112011447 55 + TSS region transcription start site region 79513
Terf2ip 8 112011398 to 112020528 9130 + protein coding gene telomeric repeat binding factor 2, interacting protein
Tssr79514 8 112011453 to 112011467 14 + TSS region transcription start site region 79514
Gm6793 8 112013433 to 112015036 1603 - pseudogene predicted gene 6793
Tssr79515 8 112018703 to 112018722 19 + TSS region transcription start site region 79515
Tssr79516 8 112018842 to 112018868 26 + TSS region transcription start site region 79516
Gm9564 8 112024933 to 112027351 2418 - protein coding gene predicted gene 9564
Tssr82990 8 112030814 to 112030845 31 - TSS region transcription start site region 82990
Tssr82991 8 112030875 to 112030914 39 - TSS region transcription start site region 82991
Tssr82992 8 112032341 to 112032359 18 - TSS region transcription start site region 82992
Gm36671 8 112061572 to 112063676 2104 + lncRNA gene predicted gene, 36671
Gm22827 8 112062505 to 112062611 106 + snRNA gene predicted gene, 22827
D8Mit165 8 112148433 to 112148534 101 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 165
Gm3635 8 112236613 to 112236966 353 - pseudogene predicted gene 3635
Gm39253 8 112293848 to 112297155 3307 - lncRNA gene predicted gene, 39253
Gm39254 8 112472122 to 112475506 3384 - lncRNA gene predicted gene, 39254
Gm26994 8 112554617 to 112569575 14958 - antisense lncRNA gene predicted gene, 26994
Cpgi21077 8 112569654 to 112569812 158 CpG island CpG island 21077
Tssr79517 8 112569827 to 112569856 29 + TSS region transcription start site region 79517
Tssr79518 8 112570021 to 112570039 18 + TSS region transcription start site region 79518
Cntnap4 8 112570043 to 112882717 312674 + protein coding gene contactin associated protein-like 4
Tssr79519 8 112570043 to 112570060 17 + TSS region transcription start site region 79519
Gm22664 8 112581636 to 112581740 104 + unclassified non-coding RNA gene predicted gene, 22664
D8Mit199 8 112595466 to 112595612 146 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 199
Tssr79520 8 112698444 to 112698459 15 + TSS region transcription start site region 79520
D8Mit152 8 112717319 to 112717565 246 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 152
D8Mit353 8 112784365 to 112784479 114 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 353
D8Mit270 8 112850476 to 112850598 122 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 270
Cpgi21078 8 112854023 to 112854548 525 CpG island CpG island 21078
Gm45904 8 112880460 to 113004997 124537 - antisense lncRNA gene predicted gene 45904
1110013I04Rik 8 112961447 to 112962559 1112 unclassified gene RIKEN cDNA 1110013I04 gene
Gm10280 8 113067262 to 113093334 26072 + lincRNA gene predicted gene 10280
Gm29896 8 113134783 to 113140159 5376 - lncRNA gene predicted gene, 29896
Gm29955 8 113372042 to 113425842 53800 - lncRNA gene predicted gene, 29955
Cpgi21079 8 113497600 to 113497776 176 CpG island CpG island 21079
4930571O06Rik 8 113517282 to 113550808 33526 + lncRNA gene RIKEN cDNA 4930571O06 gene
Gm25766 8 113519476 to 113519606 130 - snoRNA gene predicted gene, 25766
Gm24291 8 113528510 to 113528671 161 - snRNA gene predicted gene, 24291
Tssr82993 8 113528672 to 113528673 1 - TSS region transcription start site region 82993
Gm46064 8 113563320 to 113573617 10297 - pseudogene predicted gene, 46064
Tssr79521 8 113572681 to 113572685 4 + TSS region transcription start site region 79521
Gm18395 8 113589042 to 113591133 2091 + pseudogene predicted gene, 18395
4921521C08Rik 8 113633933 to 113635779 1846 unclassified gene RIKEN cDNA 4921521C08 gene
Cpgi21080 8 113634908 to 113636270 1362 CpG island CpG island 21080
Tssr79522 8 113635550 to 113635597 47 + TSS region transcription start site region 79522
Mon1b 8 113635587 to 113645179 9592 + protein coding gene MON1 homolog B, secretory traffciking associated
Tssr79523 8 113635619 to 113635630 11 + TSS region transcription start site region 79523
Tssr79524 8 113635787 to 113635842 55 + TSS region transcription start site region 79524
Tssr79525 8 113635848 to 113635862 14 + TSS region transcription start site region 79525
Tssr79526 8 113638728 to 113638741 13 + TSS region transcription start site region 79526
Tssr79527 8 113642496 to 113642511 15 + TSS region transcription start site region 79527
Tssr79528 8 113643178 to 113643197 19 + TSS region transcription start site region 79528
Tssr79529 8 113643206 to 113643231 25 + TSS region transcription start site region 79529
Syce1l 8 113643213 to 113655533 12320 + protein coding gene synaptonemal complex central element protein 1 like
Tssr79530 8 113644154 to 113644159 5 + TSS region transcription start site region 79530
Gm45789 8 113647900 to 113648263 363 - pseudogene predicted gene 45789
Gm30052 8 113667926 to 113676458 8532 - lincRNA gene predicted gene, 30052
Adamts18 8 113697126 to 113848738 151612 - protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18
Mrdq3 8 113712788 to 125329141 11616353 QTL modifier of retinal degeneration QTL 3