Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:110843294-111243313

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tgl1 8 101759576 to 110923404 9163828 QTL triglyceride level 1
Sf3b3 8 110810492 to 110846806 36314 - protein coding gene splicing factor 3b, subunit 3
Tssr82889 8 110845025 to 110845030 5 - TSS region transcription start site region 82889
Cpgi21042 8 110846348 to 110847331 983 CpG island CpG island 21042
Cog4 8 110846600 to 110882227 35627 + protein coding gene component of oligomeric golgi complex 4
Tssr82890 8 110846770 to 110846798 28 - TSS region transcription start site region 82890
Tssr79438 8 110847015 to 110847049 34 + TSS region transcription start site region 79438
Tssr79439 8 110847143 to 110847150 7 + TSS region transcription start site region 79439
Gm26816 8 110863229 to 110940314 77085 - lincRNA gene predicted gene, 26816
Fcsk 8 110882456 to 110902488 20032 - protein coding gene fucose kinase
Cpgi21043 8 110883781 to 110884091 310 CpG island CpG island 21043
Cpgi21044 8 110902191 to 110902565 374 CpG island CpG island 21044
Tssr82891 8 110902442 to 110902467 25 - TSS region transcription start site region 82891
Cpgi21045 8 110919380 to 110920903 1523 CpG island CpG island 21045
Tssr79440 8 110919826 to 110919856 30 + TSS region transcription start site region 79440
Tssr79441 8 110919874 to 110919902 28 + TSS region transcription start site region 79441
Tssr79442 8 110919916 to 110919994 78 + TSS region transcription start site region 79442
St3gal2 8 110919922 to 110972480 52558 + protein coding gene ST3 beta-galactoside alpha-2,3-sialyltransferase 2
Tssr79443 8 110923028 to 110923037 9 + TSS region transcription start site region 79443
Gm26132 8 110923116 to 110923263 147 + snoRNA gene predicted gene, 26132
D8Mit166 8 110923285 to 110923404 119 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 166
Gm46052 8 110936187 to 110939366 3179 - lncRNA gene predicted gene, 46052
Tssr79444 8 110940909 to 110940926 17 + TSS region transcription start site region 79444
Tssr79445 8 110940931 to 110940948 17 + TSS region transcription start site region 79445
Tssr79446 8 110940951 to 110940975 24 + TSS region transcription start site region 79446
Tssr79447 8 110940980 to 110940981 1 + TSS region transcription start site region 79447
Gm39251 8 110942300 to 110949609 7309 - lncRNA gene predicted gene, 39251
Tssr79448 8 110956335 to 110956360 25 + TSS region transcription start site region 79448
Cpgi21046 8 110957586 to 110957943 357 CpG island CpG island 21046
Tssr79449 8 110957727 to 110957753 26 + TSS region transcription start site region 79449
Tssr79450 8 110957761 to 110957774 13 + TSS region transcription start site region 79450
Tssr79451 8 110961168 to 110961171 3 + TSS region transcription start site region 79451
Cpgi21047 8 110962175 to 110962418 243 CpG island CpG island 21047
Tssr2687 8 110962848 to 110962851 3 + TSS region transcription start site region 2687
Cpgi21048 8 110969981 to 110970462 481 CpG island CpG island 21048
Ddx19a 8 110974996 to 110997800 22804 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a
Cpgi21049 8 110997465 to 110998057 592 CpG island CpG island 21049
Tssr82892 8 110997764 to 110997839 75 - TSS region transcription start site region 82892
Tssr79452 8 110997869 to 110997901 32 + TSS region transcription start site region 79452
Ddx19b 8 111003188 to 111031751 28563 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b
Mir3473d 8 111016450 to 111016530 80 - miRNA gene microRNA 3473d
Cpgi21050 8 111027450 to 111028030 580 CpG island CpG island 21050
Tssr82893 8 111027670 to 111027721 51 - TSS region transcription start site region 82893
Tssr82894 8 111027724 to 111027745 21 - TSS region transcription start site region 82894
Tssr82895 8 111027752 to 111027791 39 - TSS region transcription start site region 82895
Tssr82896 8 111030915 to 111030918 3 - TSS region transcription start site region 82896
Cpgi21051 8 111031531 to 111031828 297 CpG island CpG island 21051
Tssr82897 8 111031712 to 111031747 35 - TSS region transcription start site region 82897
Aars 8 111033144 to 111057664 24520 + protein coding gene alanyl-tRNA synthetase
Cpgi21052 8 111033803 to 111034252 449 CpG island CpG island 21052
Tssr79453 8 111033861 to 111033886 25 + TSS region transcription start site region 79453
Tssr79454 8 111033890 to 111033932 42 + TSS region transcription start site region 79454
Tssr79455 8 111033937 to 111033949 12 + TSS region transcription start site region 79455
Tssr79456 8 111034098 to 111034165 67 + TSS region transcription start site region 79456
Tssr79457 8 111036885 to 111036899 14 + TSS region transcription start site region 79457
Tssr79458 8 111036902 to 111036912 10 + TSS region transcription start site region 79458
Gm24103 8 111041948 to 111042024 76 - miRNA gene predicted gene, 24103
Tssr79459 8 111043294 to 111043313 19 + TSS region transcription start site region 79459
Cpgi21053 8 111056091 to 111057404 1313 CpG island CpG island 21053
Tssr79460 8 111056319 to 111056384 65 + TSS region transcription start site region 79460
Exosc6 8 111056339 to 111057664 1325 + protein coding gene exosome component 6
Tssr79461 8 111056541 to 111056600 59 + TSS region transcription start site region 79461
Gm38523 8 111058697 to 111065159 6462 - protein coding gene predicted gene, 38523
Tssr82898 8 111061767 to 111061773 6 - TSS region transcription start site region 82898
Tssr82899 8 111061814 to 111061822 8 - TSS region transcription start site region 82899
Cpgi21054 8 111062393 to 111062561 168 CpG island CpG island 21054
n-TGgcc2 8 111062561 to 111062631 70 + tRNA gene nuclear encoded tRNA glycine 2 (anticodon GCC)
Clec18a 8 111069496 to 111092424 22928 - protein coding gene C-type lectin domain family 18, member A
Tssr82900 8 111081137 to 111081148 11 - TSS region transcription start site region 82900
Tssr82901 8 111081670 to 111081679 9 - TSS region transcription start site region 82901
Tssr82902 8 111081695 to 111081730 35 - TSS region transcription start site region 82902
Tssr82903 8 111081735 to 111081740 5 - TSS region transcription start site region 82903
Tssr82904 8 111081813 to 111081824 11 - TSS region transcription start site region 82904
Tssr82905 8 111081832 to 111081843 11 - TSS region transcription start site region 82905
Tssr82906 8 111081855 to 111081871 16 - TSS region transcription start site region 82906
Tssr82907 8 111081898 to 111081916 18 - TSS region transcription start site region 82907
Tssr82908 8 111082018 to 111082021 3 - TSS region transcription start site region 82908
Tssr82909 8 111082043 to 111082078 35 - TSS region transcription start site region 82909
Cpgi21055 8 111093956 to 111095305 1349 CpG island CpG island 21055
Pdpr 8 111094630 to 111137074 42444 + protein coding gene pyruvate dehydrogenase phosphatase regulatory subunit
9430091E24Rik 8 111128886 to 111145480 16594 - lncRNA gene RIKEN cDNA 9430091E24 gene
Cpgi21056 8 111144896 to 111146118 1222 CpG island CpG island 21056
Glg1 8 111157548 to 111259202 101654 - protein coding gene golgi apparatus protein 1
Gm23193 8 111194964 to 111195045 81 + miRNA gene predicted gene, 23193
D8Mit316 8 111198869 to 111199016 147 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 316
D8Mit115 8 111238743 to 111238884 141 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 115