Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:110468781-111299091

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157 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tgl1 8 101759576 to 110923404 9163828 QTL triglyceride level 1
Hydin 8 110266977 to 110610253 343276 + protein coding gene HYDIN, axonemal central pair apparatus protein
Tssr82872 8 110489814 to 110489817 3 - TSS region transcription start site region 82872
Gm21283 8 110495366 to 110502356 6990 - lncRNA gene predicted gene, 21283
Gm22701 8 110498852 to 110499142 290 + unclassified non-coding RNA gene predicted gene, 22701
Gm47306 8 110498985 to 110499044 59 + miRNA gene predicted gene, 47306
Tssr82873 8 110502348 to 110502361 13 - TSS region transcription start site region 82873
Tssr82874 8 110503048 to 110503067 19 - TSS region transcription start site region 82874
Tssr82875 8 110503072 to 110503080 8 - TSS region transcription start site region 82875
D8Dcr40 8 110518690 to 110518791 101 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 40
Tssr82876 8 110521936 to 110521952 16 - TSS region transcription start site region 82876
Tssr82877 8 110522131 to 110522158 27 - TSS region transcription start site region 82877
Tssr82878 8 110522170 to 110522188 18 - TSS region transcription start site region 82878
Tssr79417 8 110522384 to 110522387 3 + TSS region transcription start site region 79417
Gm44489 8 110556766 to 110556862 96 - miRNA gene predicted gene, 44489
D8Mit213 8 110565339 to 110565515 176 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 213
D8Mit151 8 110591723 to 110591965 242 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 151
Cpgi21037 8 110618381 to 110619264 883 CpG island CpG island 21037
Tssr79418 8 110618577 to 110618619 42 + TSS region transcription start site region 79418
Vac14 8 110618585 to 110720398 101813 + protein coding gene Vac14 homolog (S. cerevisiae)
Tssr79419 8 110618673 to 110618693 20 + TSS region transcription start site region 79419
n-TGgcc11 8 110630553 to 110630623 70 - tRNA gene nuclear encoded tRNA glycine 11 (anticodon GCC)
n-TGgcc10 8 110631246 to 110631316 70 - tRNA gene nuclear encoded tRNA glycine 10 (anticodon GCC)
Tssr79420 8 110703236 to 110703243 7 + TSS region transcription start site region 79420
Tssr79421 8 110703721 to 110703734 13 + TSS region transcription start site region 79421
Tssr79422 8 110715118 to 110715129 11 + TSS region transcription start site region 79422
Cpgi21038 8 110720646 to 110722535 1889 CpG island CpG island 21038
Tssr79423 8 110721422 to 110721444 22 + TSS region transcription start site region 79423
Tssr79424 8 110721451 to 110721456 5 + TSS region transcription start site region 79424
Tssr79425 8 110721462 to 110721486 24 + TSS region transcription start site region 79425
Mtss2 8 110721476 to 110741400 19924 + protein coding gene MTSS I-BAR domain containing 2
Tssr79426 8 110721496 to 110721504 8 + TSS region transcription start site region 79426
Tssr79427 8 110721655 to 110721724 69 + TSS region transcription start site region 79427
Cpgi21039 8 110727005 to 110727583 578 CpG island CpG island 21039
Tssr79428 8 110727110 to 110727131 21 + TSS region transcription start site region 79428
Tssr79429 8 110728832 to 110728854 22 + TSS region transcription start site region 79429
Tssr79430 8 110730055 to 110730076 21 + TSS region transcription start site region 79430
Tssr79431 8 110732121 to 110732134 13 + TSS region transcription start site region 79431
Tssr79432 8 110737933 to 110737948 15 + TSS region transcription start site region 79432
Cpgi21040 8 110738328 to 110739303 975 CpG island CpG island 21040
Tssr2686 8 110738559 to 110738577 18 + TSS region transcription start site region 2686
Tssr79433 8 110740925 to 110740933 8 + TSS region transcription start site region 79433
Tssr79434 8 110741057 to 110741071 14 + TSS region transcription start site region 79434
Tssr79435 8 110741186 to 110741205 19 + TSS region transcription start site region 79435
Il34 8 110741829 to 110805924 64095 - protein coding gene interleukin 34
Cpgi21041 8 110748175 to 110748449 274 CpG island CpG island 21041
Tssr79436 8 110754989 to 110755004 15 + TSS region transcription start site region 79436
Tssr82879 8 110755583 to 110755595 12 - TSS region transcription start site region 82879
Tssr82880 8 110755606 to 110755664 58 - TSS region transcription start site region 82880
Gm15894 8 110755841 to 110758972 3131 + antisense lncRNA gene predicted gene 15894
Gm39250 8 110760395 to 110780955 20560 + lncRNA gene predicted gene, 39250
Tssr82881 8 110776446 to 110776448 2 - TSS region transcription start site region 82881
Tssr82882 8 110790380 to 110790390 10 - TSS region transcription start site region 82882
Tssr82883 8 110793561 to 110793584 23 - TSS region transcription start site region 82883
Tssr82884 8 110793585 to 110793597 12 - TSS region transcription start site region 82884
Tssr82885 8 110793607 to 110793614 7 - TSS region transcription start site region 82885
Tssr82886 8 110793631 to 110793641 10 - TSS region transcription start site region 82886
Tssr79437 8 110805432 to 110805452 20 + TSS region transcription start site region 79437
Gm15895 8 110805638 to 110807477 1839 + antisense lncRNA gene predicted gene 15895
Tssr82887 8 110805822 to 110805848 26 - TSS region transcription start site region 82887
Tssr82888 8 110805863 to 110805952 89 - TSS region transcription start site region 82888
Sf3b3 8 110810492 to 110846806 36314 - protein coding gene splicing factor 3b, subunit 3
Snord111 8 110838535 to 110838598 63 - snoRNA gene small nucleolar RNA, C/D box 111
Gm22193 8 110842383 to 110842458 75 - snoRNA gene predicted gene, 22193
Tssr82889 8 110845025 to 110845030 5 - TSS region transcription start site region 82889
Cpgi21042 8 110846348 to 110847331 983 CpG island CpG island 21042
Cog4 8 110846600 to 110882227 35627 + protein coding gene component of oligomeric golgi complex 4
Tssr82890 8 110846770 to 110846798 28 - TSS region transcription start site region 82890
Tssr79438 8 110847015 to 110847049 34 + TSS region transcription start site region 79438
Tssr79439 8 110847143 to 110847150 7 + TSS region transcription start site region 79439
Gm26816 8 110863229 to 110940314 77085 - lincRNA gene predicted gene, 26816
Fcsk 8 110882456 to 110902488 20032 - protein coding gene fucose kinase
Cpgi21043 8 110883781 to 110884091 310 CpG island CpG island 21043
Cpgi21044 8 110902191 to 110902565 374 CpG island CpG island 21044
Tssr82891 8 110902442 to 110902467 25 - TSS region transcription start site region 82891
Cpgi21045 8 110919380 to 110920903 1523 CpG island CpG island 21045
Tssr79440 8 110919826 to 110919856 30 + TSS region transcription start site region 79440
Tssr79441 8 110919874 to 110919902 28 + TSS region transcription start site region 79441
Tssr79442 8 110919916 to 110919994 78 + TSS region transcription start site region 79442
St3gal2 8 110919922 to 110972480 52558 + protein coding gene ST3 beta-galactoside alpha-2,3-sialyltransferase 2
Tssr79443 8 110923028 to 110923037 9 + TSS region transcription start site region 79443
Gm26132 8 110923116 to 110923263 147 + snoRNA gene predicted gene, 26132
D8Mit166 8 110923285 to 110923404 119 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 166
Gm46052 8 110936187 to 110939366 3179 - lncRNA gene predicted gene, 46052
Tssr79444 8 110940909 to 110940926 17 + TSS region transcription start site region 79444
Tssr79445 8 110940931 to 110940948 17 + TSS region transcription start site region 79445
Tssr79446 8 110940951 to 110940975 24 + TSS region transcription start site region 79446
Tssr79447 8 110940980 to 110940981 1 + TSS region transcription start site region 79447
Gm39251 8 110942300 to 110949609 7309 - lncRNA gene predicted gene, 39251
Tssr79448 8 110956335 to 110956360 25 + TSS region transcription start site region 79448
Cpgi21046 8 110957586 to 110957943 357 CpG island CpG island 21046
Tssr79449 8 110957727 to 110957753 26 + TSS region transcription start site region 79449
Tssr79450 8 110957761 to 110957774 13 + TSS region transcription start site region 79450
Tssr79451 8 110961168 to 110961171 3 + TSS region transcription start site region 79451
Cpgi21047 8 110962175 to 110962418 243 CpG island CpG island 21047
Tssr2687 8 110962848 to 110962851 3 + TSS region transcription start site region 2687
Cpgi21048 8 110969981 to 110970462 481 CpG island CpG island 21048
Ddx19a 8 110974996 to 110997800 22804 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a
Cpgi21049 8 110997465 to 110998057 592 CpG island CpG island 21049
Tssr82892 8 110997764 to 110997839 75 - TSS region transcription start site region 82892
Tssr79452 8 110997869 to 110997901 32 + TSS region transcription start site region 79452
Ddx19b 8 111003188 to 111031751 28563 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b
Mir3473d 8 111016450 to 111016530 80 - miRNA gene microRNA 3473d
Cpgi21050 8 111027450 to 111028030 580 CpG island CpG island 21050
Tssr82893 8 111027670 to 111027721 51 - TSS region transcription start site region 82893
Tssr82894 8 111027724 to 111027745 21 - TSS region transcription start site region 82894
Tssr82895 8 111027752 to 111027791 39 - TSS region transcription start site region 82895
Tssr82896 8 111030915 to 111030918 3 - TSS region transcription start site region 82896
Cpgi21051 8 111031531 to 111031828 297 CpG island CpG island 21051
Tssr82897 8 111031712 to 111031747 35 - TSS region transcription start site region 82897
Aars 8 111033144 to 111057664 24520 + protein coding gene alanyl-tRNA synthetase
Cpgi21052 8 111033803 to 111034252 449 CpG island CpG island 21052
Tssr79453 8 111033861 to 111033886 25 + TSS region transcription start site region 79453
Tssr79454 8 111033890 to 111033932 42 + TSS region transcription start site region 79454
Tssr79455 8 111033937 to 111033949 12 + TSS region transcription start site region 79455
Tssr79456 8 111034098 to 111034165 67 + TSS region transcription start site region 79456
Tssr79457 8 111036885 to 111036899 14 + TSS region transcription start site region 79457
Tssr79458 8 111036902 to 111036912 10 + TSS region transcription start site region 79458
Gm24103 8 111041948 to 111042024 76 - miRNA gene predicted gene, 24103
Tssr79459 8 111043294 to 111043313 19 + TSS region transcription start site region 79459
Cpgi21053 8 111056091 to 111057404 1313 CpG island CpG island 21053
Tssr79460 8 111056319 to 111056384 65 + TSS region transcription start site region 79460
Exosc6 8 111056339 to 111057664 1325 + protein coding gene exosome component 6
Tssr79461 8 111056541 to 111056600 59 + TSS region transcription start site region 79461
Gm38523 8 111058697 to 111065159 6462 - protein coding gene predicted gene, 38523
Tssr82898 8 111061767 to 111061773 6 - TSS region transcription start site region 82898
Tssr82899 8 111061814 to 111061822 8 - TSS region transcription start site region 82899
Cpgi21054 8 111062393 to 111062561 168 CpG island CpG island 21054
n-TGgcc2 8 111062561 to 111062631 70 + tRNA gene nuclear encoded tRNA glycine 2 (anticodon GCC)
Clec18a 8 111069496 to 111092424 22928 - protein coding gene C-type lectin domain family 18, member A
Tssr82900 8 111081137 to 111081148 11 - TSS region transcription start site region 82900
Tssr82901 8 111081670 to 111081679 9 - TSS region transcription start site region 82901
Tssr82902 8 111081695 to 111081730 35 - TSS region transcription start site region 82902
Tssr82903 8 111081735 to 111081740 5 - TSS region transcription start site region 82903
Tssr82904 8 111081813 to 111081824 11 - TSS region transcription start site region 82904
Tssr82905 8 111081832 to 111081843 11 - TSS region transcription start site region 82905
Tssr82906 8 111081855 to 111081871 16 - TSS region transcription start site region 82906
Tssr82907 8 111081898 to 111081916 18 - TSS region transcription start site region 82907
Tssr82908 8 111082018 to 111082021 3 - TSS region transcription start site region 82908
Tssr82909 8 111082043 to 111082078 35 - TSS region transcription start site region 82909
Cpgi21055 8 111093956 to 111095305 1349 CpG island CpG island 21055
Pdpr 8 111094630 to 111137074 42444 + protein coding gene pyruvate dehydrogenase phosphatase regulatory subunit
9430091E24Rik 8 111128886 to 111145480 16594 - lncRNA gene RIKEN cDNA 9430091E24 gene
Cpgi21056 8 111144896 to 111146118 1222 CpG island CpG island 21056
Glg1 8 111157548 to 111259202 101654 - protein coding gene golgi apparatus protein 1
Gm23193 8 111194964 to 111195045 81 + miRNA gene predicted gene, 23193
D8Mit316 8 111198869 to 111199016 147 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 316
D8Mit115 8 111238743 to 111238884 141 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 115
Tssr82910 8 111247287 to 111247291 4 - TSS region transcription start site region 82910
Tssr82911 8 111253877 to 111253908 31 - TSS region transcription start site region 82911
Tssr82912 8 111258135 to 111258141 6 - TSS region transcription start site region 82912
Cpgi21057 8 111258381 to 111259582 1201 CpG island CpG island 21057
Tssr82913 8 111259192 to 111259221 29 - TSS region transcription start site region 82913
Tssr79462 8 111259291 to 111259314 23 + TSS region transcription start site region 79462
Rfwd3 8 111270944 to 111300222 29278 - protein coding gene ring finger and WD repeat domain 3
Tssr82914 8 111281495 to 111281499 4 - TSS region transcription start site region 82914
8430437B07Rik 8 111286611 to 111287766 1155 unclassified gene RIKEN cDNA 8430437B07 gene